Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 2.2e-94 349.0 177 100.0
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 3.7e-78 295.0 177 84.7
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 4.9e-78 294.7 177 85.3
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 5.4e-77 291.2 178 84.3
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 9.2e-77 290.4 178 83.7
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 5.0e-75 284.6 178 84.3
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 1.1e-74 283.5 178 83.1
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 1.9e-74 282.7 178 83.1
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 2.5e-74 282.3 178 82.6
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 2.1e-73 279.3 178 82.0
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 2.8e-73 278.9 178 83.1
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 4.7e-73 278.1 181 81.2
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 1.0e-72 276.9 178 80.3
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 1.4e-72 276.6 172 82.0
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 1.8e-72 276.2 180 81.1
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 2.3e-72 275.8 167 85.0
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 3.1e-72 275.4 179 81.0
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 5.2e-72 274.6 183 82.0
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 8.9e-72 273.9 178 80.9
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 1.5e-71 273.1 180 80.6
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 1.5e-71 273.1 180 80.0
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 2.6e-71 272.3 180 80.6
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 2.6e-71 272.3 179 79.9
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 2.6e-71 272.3 180 81.7
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 3.4e-71 271.9 178 80.3
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 3.4e-71 271.9 177 79.1
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 5.8e-71 271.2 178 80.9
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 5.8e-71 271.2 180 79.4
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 1.3e-70 270.0 178 79.8
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.3e-70 270.0 175 81.1
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 1.7e-70 269.6 175 81.1
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.7e-70 269.6 175 81.1
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 1.7e-70 269.6 176 78.4
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 1.7e-70 269.6 172 80.2
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 2.2e-70 269.2 177 81.4
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 2.9e-70 268.9 178 80.3
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 2.9e-70 268.9 181 79.6
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 2.9e-70 268.9 181 79.6
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 4.9e-70 268.1 178 80.3
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 8.3e-70 267.3 178 79.8
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.1e-69 266.9 175 80.6
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 1.1e-69 266.9 172 78.5
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 5.4e-69 264.6 177 77.4
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 5.4e-69 264.6 180 78.9
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 1.2e-68 263.5 170 82.4
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 2.7e-68 262.3 182 78.0
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 3.5e-68 261.9 174 78.7
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 6.0e-68 261.2 178 74.7
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 6.0e-68 261.2 177 78.0
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 1.0e-67 260.4 180 76.7
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.3e-67 259.2 178 74.7
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 3.0e-67 258.8 178 75.8
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 3.0e-67 258.8 179 77.7
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 3.9e-67 258.5 180 76.7
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 3.9e-67 258.5 180 76.7
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 5.0e-67 258.1 178 75.3
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 6.6e-67 257.7 179 73.2
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 6.6e-67 257.7 179 73.2
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 6.6e-67 257.7 178 75.8
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 1.9e-66 256.1 177 78.0
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.9e-66 256.1 174 79.3
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 2.5e-66 255.8 177 78.0
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 2.5e-66 255.8 177 78.0
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 2.5e-66 255.8 177 78.0
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 2.5e-66 255.8 177 78.0
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 2.5e-66 255.8 168 77.4
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 3.3e-66 255.4 178 74.7
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 3.3e-66 255.4 165 80.6
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 5.6e-66 254.6 178 74.2
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 9.5e-66 253.8 178 74.2
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 1.2e-65 253.4 179 73.7
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 2.8e-65 252.3 179 74.9
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 3.6e-65 251.9 180 75.0
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 4.7e-65 251.5 177 77.4
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 8.0e-65 250.8 168 77.4
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 8.0e-65 250.8 174 76.4
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 1.1e-64 250.4 182 75.3
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 1.1e-64 250.4 182 75.3
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 2.3e-64 249.2 178 71.9
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 2.3e-64 249.2 178 71.9
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 3.1e-64 248.8 182 74.7
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 3.1e-64 248.8 178 75.3
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 5.2e-64 248.1 180 73.3
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 6.8e-64 247.7 180 73.3
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 6.8e-64 247.7 178 74.7
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 1.2e-63 246.9 151 82.1
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 1.2e-63 246.9 180 75.0
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 1.5e-63 246.5 180 74.4
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 2.0e-63 246.1 180 74.4
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 2.6e-63 245.7 181 71.8
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 3.4e-63 245.4 179 73.2
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 5.8e-63 244.6 180 72.8
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 7.5e-63 244.2 177 74.0
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 7.5e-63 244.2 182 73.1
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.3e-62 243.4 176 73.3
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 1.3e-62 243.4 178 71.3
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 2.9e-62 242.3 178 73.0
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 6.4e-62 241.1 175 72.0
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 6.4e-62 241.1 175 73.7
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 2.4e-61 239.2 171 70.2
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 4.1e-61 238.4 180 71.7
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 4.1e-61 238.4 184 70.1
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 4.1e-61 238.4 178 68.5
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 7.1e-61 237.7 181 71.3
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 7.1e-61 237.7 176 70.5
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 2.7e-60 235.7 178 71.9
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 1.7e-59 233.0 173 71.1
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 1.7e-59 233.0 182 69.8
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 2.3e-59 232.6 186 68.8
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 2.3e-59 232.6 190 66.8
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 3.0e-59 232.3 181 70.2
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 3.9e-59 231.9 176 69.3
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 1.9e-58 229.6 172 70.3
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 2.5e-58 229.2 176 70.5
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 3.3e-58 228.8 172 69.8
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 7.3e-58 227.6 176 69.9
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 2.1e-57 226.1 178 68.0
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 3.6e-57 225.3 176 69.9
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 4.7e-57 224.9 148 75.7
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 8.1e-57 224.2 253 52.6
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 3.1e-56 222.2 174 69.0
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 6.8e-56 221.1 180 66.7
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 8.9e-56 220.7 167 70.1
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 8.9e-56 220.7 174 68.4
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 4.4e-55 218.4 174 67.2
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 1.7e-54 216.5 182 68.7
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 1.4e-53 213.4 158 73.4
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 1.9e-53 213.0 180 65.0
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 5.4e-53 211.5 156 74.4
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 7.1e-53 211.1 170 64.1
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 2.3e-51 206.1 121 81.8
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 8.9e-48 194.1 177 63.8
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 9.9e-47 190.7 176 57.4
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 1.3e-46 190.3 124 73.4
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 1.3e-46 190.3 182 61.5
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 3.2e-45 185.7 183 60.1
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 7.1e-45 184.5 143 60.8
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 1.1e-42 177.2 179 53.6
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 8.1e-41 171.0 174 53.4
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 4.9e-38 161.8 111 72.1
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.7e-35 153.3 86 84.9
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.9e-34 149.8 86 82.6
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.9e-34 149.8 175 51.4
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 9.6e-34 147.5 89 83.1
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 3.6e-33 145.6 177 48.6
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 1.5e-31 140.2 130 62.3
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 3.8e-30 135.6 112 65.2
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 1.9e-29 133.3 112 65.2
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 2.4e-29 132.9 130 58.5
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 1.8e-27 126.7 145 55.9
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 1.8e-24 116.7 124 50.8
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 5.3e-24 115.2 125 46.4
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 1.2e-20 104.0 105 44.8
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 4.6e-20 102.1 107 57.9
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 4.6e-20 102.1 107 57.9
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 3.0e-19 99.4 86 66.3
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 1.5e-18 97.1 92 59.8
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 9.6e-18 94.4 143 38.5
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 7.6e-15 84.7 46 84.8
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 6.1e-12 75.1 79 50.6
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 5.1e-11 72.0 60 63.3
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 5.1e-11 72.0 89 39.3
Nitab4.5_0018373g0020 Nicotiana tabacum HOM05D000428 ORTHO05D000582 1.8e-08 63.5 84 44.0
CARHR038570 Cardamine hirsuta HOM05D004222 ORTHO05D004982 9.0e-08 61.2 78 53.8
ECA238G1237 Erigeron canadensis HOM05D004222 ORTHO05D004982 9.0e-08 61.2 193 32.6
Cc01_g11080 Coffea canephora HOM05D004222 ORTHO05D154025 1.7e-06 57.0 93 41.9


User provided reference genes

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