Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G1387 Punica granatum HOM05D006220 ORTHO05D007590 2.0e-176 623.2 585 100.0
Thecc.07G079000 Theobroma cacao HOM05D006220 ORTHO05D007590 1.2e-125 454.5 585 81.4
Cfa020552 Carpinus fangiana HOM05D006220 ORTHO05D007590 6.9e-121 438.7 582 77.7
Hma1.2p1_0148F.1_g066160 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 2.5e-118 430.3 581 80.7
CSS0010017 Camellia sinensis var. sinensis HOM05D006220 ORTHO05D007590 7.9e-117 425.2 581 80.2
COL.COLO4_09426 Corchorus olitorius HOM05D006220 ORTHO05D007590 1.8e-116 424.1 585 79.5
GSVIVG01014371001 Vitis vinifera HOM05D006220 ORTHO05D007590 3.0e-116 423.3 582 79.6
Gorai.013G167800 Gossypium raimondii HOM05D006220 ORTHO05D007590 6.7e-116 422.2 585 79.0
Gohir.A13G145200 Gossypium hirsutum HOM05D006220 ORTHO05D007590 3.3e-115 419.9 585 76.2
Gohir.D13G150000 Gossypium hirsutum HOM05D006220 ORTHO05D007590 5.6e-115 419.1 585 78.6
Hund22942 Selenicereus undatus HOM05D006220 ORTHO05D007590 1.6e-114 417.5 581 76.6
HanXRQChr03g0078511 Helianthus annuus HOM05D006220 ORTHO05D007590 5.3e-113 412.5 582 73.0
Sed0021838 Sechium edule HOM05D006220 ORTHO05D007590 1.3e-111 407.9 581 78.8
Prupe.4G184800 Prunus persica HOM05D006220 ORTHO05D007590 2.9e-111 406.8 581 71.8
MELO3C016523.2 Cucumis melo HOM05D006220 ORTHO05D007590 4.9e-111 406.0 581 76.4
RcHm_v2.0_Chr5g0034391 Rosa chinensis HOM05D006220 ORTHO05D007590 6.5e-111 405.6 581 76.8
Sp3g13670 Schrenkiella parvula HOM05D006220 ORTHO05D007590 4.2e-110 402.9 587 72.6
TWI38G2391 Tripterygium wilfordii HOM05D006220 ORTHO05D007590 5.5e-110 402.5 582 77.0
AL3G27960 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 4.6e-109 399.4 585 76.2
AT3G15410 Arabidopsis thaliana HOM05D006220 ORTHO05D007590 1.3e-108 397.9 585 75.2
ECA240G2314 Erigeron canadensis HOM05D006220 ORTHO05D007590 1.8e-108 397.5 585 74.2
THA.LOC104810484 Tarenaya hassleriana HOM05D006220 ORTHO05D007590 3.9e-108 396.4 585 78.8
Carub.0003s1514 Capsella rubella HOM05D006220 ORTHO05D007590 1.5e-107 394.4 585 76.1
CsaV3_3G006190 Cucumis sativus L. HOM05D006220 ORTHO05D007590 1.9e-107 394.0 581 74.0
Os02g0826600 Oryza sativa ssp. japonica HOM05D006220 ORTHO05D007590 5.9e-104 382.5 587 71.7
BcaB06g29573 Brassica carinata HOM05D006220 ORTHO05D007590 2.2e-103 380.6 584 73.1
Manes.03G112900 Manihot esculenta HOM05D006220 ORTHO05D007590 3.8e-103 379.8 585 73.7
CARHR090460 Cardamine hirsuta HOM05D006220 ORTHO05D007590 7.9e-101 372.1 585 73.8
Thhalv10020366m.g Eutrema salsugineum HOM05D006220 ORTHO05D007590 1.8e-100 370.9 587 71.9
arahy.Tifrunner.gnm1.ann1.LU5I8Y Arachis hypogaea HOM05D006220 ORTHO05D007590 2.3e-100 370.5 591 69.5
Zm00001eb259320 Zea mays HOM05D006220 ORTHO05D007590 3.0e-100 370.2 585 72.8
Duzib213G0302 Durio zibethinus HOM05D006220 ORTHO05D007590 5.1e-100 369.4 505 78.8
BraA05t22221Z Brassica rapa HOM05D006220 ORTHO05D007590 8.8e-100 368.6 590 71.7
Ciclev10007835m.g Citrus clementina HOM05D006220 ORTHO05D007590 2.5e-99 367.1 582 76.8
HPP92_022050 Vanilla planifolia HOM05D006220 ORTHO05D007590 3.3e-99 366.7 588 70.9
Eucgr.F03334 Eucalyptus grandis HOM05D006220 ORTHO05D007590 2.2e-98 364.0 583 75.1
Cc05_g12250 Coffea canephora HOM05D006220 ORTHO05D007590 1.2e-96 358.2 581 73.7
Nitab4.5_0000207g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 4.5e-96 356.3 590 65.8
Lalb_Chr20g0109761 Lupinus albus HOM05D006220 ORTHO05D007590 5.9e-96 355.9 585 71.6
BolC5t33860H Brassica oleracea HOM05D006220 ORTHO05D007590 7.7e-96 355.5 590 70.3
AUR62029364 Chenopodium quinoa HOM05D006220 ORTHO05D007590 2.2e-95 354.0 583 56.3
CANSAT56G4311 Cannabis sativa HOM05D006220 ORTHO05D007590 6.1e-93 345.9 581 70.6
arahy.Tifrunner.gnm1.ann1.BQ9KJC Arachis hypogaea HOM05D006220 ORTHO05D007590 3.9e-92 343.2 591 67.9
Atru.chr2.2718 Acer truncatum HOM05D006220 ORTHO05D007590 8.8e-92 342.0 582 73.2
Actinidia05212 Actinidia chinensis HOM05D006220 ORTHO05D007590 1.5e-91 341.3 581 72.8
Migut.H01927 Erythranthe guttata HOM05D006220 ORTHO05D007590 2.0e-91 340.9 581 75.7
AUR62034280 Chenopodium quinoa HOM05D006220 ORTHO05D007590 4.4e-91 339.7 574 60.6
SGA_v2.0_scaffold9G04934 Striga asiatica HOM05D006220 ORTHO05D007590 4.4e-91 339.7 598 69.6
A05p33990 Brassica napus HOM05D006220 ORTHO05D007590 5.7e-91 339.3 563 70.9
CAN.G1110.52 Capsicum annuum HOM05D006220 ORTHO05D007590 9.7e-91 338.6 581 69.9
Sc16g0006920 Simmondsia chinensis HOM05D006220 ORTHO05D007590 6.3e-90 335.9 511 76.1
ClCG10G006830 Citrullus lanatus HOM05D006220 ORTHO05D007590 3.1e-89 333.6 536 72.2
BcaC05g29008 Brassica carinata HOM05D006220 ORTHO05D007590 5.3e-89 332.8 562 71.2
Aqoxy4G01032 Aquilegia oxysepala HOM05D006220 ORTHO05D007590 1.5e-88 331.3 583 71.7
Lsat_1_v5_gn_9_97140 Lactuca sativa HOM05D006220 ORTHO05D007590 2.0e-88 330.9 511 66.3
DCAR_017149 Daucus carota HOM05D006220 ORTHO05D007590 3.5e-88 330.1 511 75.1
Solyc10g006930.4 Solanum lycopersicum HOM05D006220 ORTHO05D007590 3.5e-88 330.1 581 68.7
MD00G1090000 Malus domestica HOM05D006220 ORTHO05D007590 1.7e-87 327.8 557 68.4
TAR626G0245 Trochodendron aralioides HOM05D006220 ORTHO05D007590 1.7e-87 327.8 564 73.4
Glyma.13G278800 Glycine max HOM05D006220 ORTHO05D007590 2.9e-87 327.0 585 70.9
MD11G1243700 Malus domestica HOM05D006220 ORTHO05D007590 5.0e-87 326.2 586 59.4
Sopen10g002840 Solanum pennellii HOM05D006220 ORTHO05D007590 1.1e-86 325.1 581 68.3
Cpa.g.sc80.40 Carica papaya HOM05D006220 ORTHO05D007590 1.6e-85 321.2 593 66.8
Lj3g0017554 Lotus japonicus HOM05D006220 ORTHO05D007590 2.7e-85 320.5 582 68.9
Aa31LG8G2650 Aethionema arabicum HOM05D006220 ORTHO05D007590 1.4e-84 318.2 645 62.6
TPR.G38952 Trifolium pratense HOM05D006220 ORTHO05D007590 3.0e-84 317.0 598 64.9
Psat5g245040 Pisum sativum HOM05D006220 ORTHO05D007590 3.3e-83 313.5 586 70.5
Oeu008016.1 Olea europaea HOM05D006220 ORTHO05D007590 4.4e-83 313.2 319 64.9
MSTRG.14365 Avicennia marina HOM05D006220 ORTHO05D007590 5.7e-83 312.8 585 69.4
FAN25G1684 Fragaria x ananassa HOM05D006220 ORTHO05D007590 1.7e-82 311.2 582 70.3
Rhsim06G0196800 Rhododendron simsii HOM05D006220 ORTHO05D007590 2.8e-82 310.5 598 68.7
Nn1g06599 Nelumbo nucifera HOM05D006220 ORTHO05D007590 1.8e-81 307.8 630 65.7
CDE05G0932 Ceratophyllum demersum HOM05D006220 ORTHO05D007590 1.0e-79 302.0 587 68.8
PSO210G4054 Papaver somniferum HOM05D006220 ORTHO05D007590 6.5e-79 299.3 582 69.8
Medtr2g079560 Medicago truncatula HOM05D006220 ORTHO05D007590 2.5e-78 297.4 592 68.2
Potri.011G121700 Populus trichocarpa HOM05D006220 ORTHO05D007590 2.5e-78 297.4 582 69.8
Sabra11G0107700 Salix brachista HOM05D006220 ORTHO05D007590 3.2e-78 297.0 682 62.5
FvH4_3g20490 Fragaria vesca HOM05D006220 ORTHO05D007590 4.7e-77 293.1 582 69.1
Hma1.2p1_0148F.1_g066170 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 1.8e-76 291.2 328 76.2
Glyma.12G222700 Glycine max HOM05D006220 ORTHO05D007590 2.3e-76 290.8 585 63.9
Peaxi162Scf00027g02813 Petunia axillaris HOM05D006220 ORTHO05D007590 2.3e-76 290.8 560 72.7
FAN16G3027 Fragaria x ananassa HOM05D006220 ORTHO05D007590 3.0e-76 290.4 582 68.9
Nitab4.5_0001320g0170 Nicotiana tabacum HOM05D006220 ORTHO05D007590 7.5e-75 285.8 310 65.5
FAN11G1997 Fragaria x ananassa HOM05D006220 ORTHO05D007590 1.3e-74 285.0 596 61.6
Dinv08311 Davidia involucrata HOM05D006220 ORTHO05D007590 2.0e-72 277.7 413 65.9
MBI17_g46353_MAGBIO Magnolia biondii HOM05D006220 ORTHO05D007590 3.5e-72 276.9 410 66.8
VMungo1080G0525 Vigna mungo HOM05D006220 ORTHO05D007590 2.9e-71 273.9 562 68.7
ATR0680G100 Amborella trichopoda HOM05D006220 ORTHO05D007590 1.5e-70 271.6 584 67.8
CiPaw.11G172800 Carya illinoinensis HOM05D006220 ORTHO05D007590 1.9e-70 271.2 443 77.9
Phvul.005G083000 Phaseolus vulgaris HOM05D006220 ORTHO05D007590 2.5e-70 270.8 585 66.3
Mapoly0029s0091 Marchantia polymorpha HOM05D006220 ORTHO05D007590 1.2e-67 261.9 588 66.8
C05p51740 Brassica napus HOM05D006220 ORTHO05D007590 2.0e-67 261.2 517 71.4
SalBow7G3592 Salvia bowleyana HOM05D006220 ORTHO05D007590 3.4e-67 260.4 561 59.5
PSO832G1845 Papaver somniferum HOM05D006220 ORTHO05D007590 8.3e-66 255.8 582 66.8
AagrBONN_evm.TU.Sc2ySwM_362.1464 Anthoceros agrestis HOM05D006220 ORTHO05D007590 9.1e-65 252.3 591 59.7
Haze_09468 Corylus avellana HOM05D006220 ORTHO05D007590 2.0e-64 251.1 221 71.5
EL10Ac4g08136 Beta vulgaris HOM05D006220 ORTHO05D007590 1.0e-63 248.8 562 61.4
vmacro11856 Vaccinium macrocarpon HOM05D006220 ORTHO05D007590 1.3e-63 248.4 586 60.4
unitig_26.g9535 Utricularia gibba HOM05D006220 ORTHO05D007590 3.6e-61 240.4 559 39.5
Pp3c6_15930 Physcomitrium patens HOM05D006220 ORTHO05D007590 7.0e-57 226.1 594 57.1
SMO200G0168 Selaginella moellendorffii HOM05D006220 ORTHO05D007590 5.8e-51 206.5 584 61.3
Lj1A847G19 Lonicera japonica HOM05D006220 ORTHO05D007590 1.6e-48 198.4 541 61.9
MD11G1243500 Malus domestica HOM05D006220 ORTHO05D007590 1.6e-45 188.3 198 64.6
arahy.Tifrunner.gnm1.ann1.XCJ8AH Arachis hypogaea HOM05D006220 ORTHO05D007590 4.1e-41 173.7 237 52.7
FAN11G3846 Fragaria x ananassa HOM05D000189 ORTHO05D007610 1.2e-37 162.2 147 56.5
Gohir.1Z049312 Gossypium hirsutum HOM05D006220 ORTHO05D007590 5.2e-36 156.8 121 74.4
CBR_g29878 Chara braunii HOM05D006220 ORTHO05D007590 4.3e-30 137.1 247 34.8
Sabra11G0106700 Salix brachista HOM05D006220 ORTHO05D007590 9.3e-25 119.4 75 77.3
Sabra11G0107000 Salix brachista HOM05D006220 ORTHO05D007590 9.3e-25 119.4 75 77.3
Sabra11G0105900 Salix brachista HOM05D006220 ORTHO05D007590 2.7e-24 117.9 75 76.0
Sabra11G0105600 Salix brachista HOM05D006220 ORTHO05D007590 6.0e-24 116.7 75 76.0
HPP92_027622 Vanilla planifolia HOM05D006220 ORTHO05D007590 5.1e-23 113.6 75 72.0
Cc05_g12270 Coffea canephora HOM05D006220 ORTHO05D007590 1.5e-22 112.1 141 61.7
Cc05_g12290 Coffea canephora HOM05D006220 ORTHO05D007590 1.5e-22 112.1 141 61.7
Cc05_g12300 Coffea canephora HOM05D006220 ORTHO05D007590 1.5e-22 112.1 141 61.7
Lsat_1_v5_gn_9_85500 Lactuca sativa HOM05D006220 ORTHO05D007590 2.5e-22 111.3 113 54.9
Thecc.07G078400 Theobroma cacao HOM05D006220 ORTHO05D007590 2.4e-20 104.8 102 83.3
Nitab4.5_0001320g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 3.1e-20 104.4 98 59.2
Sc13g0008670 Simmondsia chinensis HOM05D006220 ORTHO05D007590 7.1e-17 93.2 98 78.6
HanXRQChr09g0260971 Helianthus annuus HOM05D006220 ORTHO05D007590 6.0e-16 90.1 60 70.0
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 6.0e-16 90.1 73 58.9
Haze_09464 Corylus avellana HOM05D006220 ORTHO05D007590 9.6e-14 82.8 53 73.6
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 1.4e-12 79.0 75 48.0
Cre01.g054100 Chlamydomonas reinhardtii HOM05D006220 ORTHO05D007590 3.1e-12 77.8 226 42.5
MCO03G083 Micromonas commoda HOM05D006220 ORTHO05D007590 4.5e-11 73.9 298 30.5
Atru.chr2.2722 Acer truncatum HOM05D006220 ORTHO05D017154 1.7e-10 72.0 113 45.1
AL230U10010 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 1.2e-08 65.9 39 82.1


User provided reference genes

Program Settings