Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 0.0e+00 1113.2 558 100.0
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 9.5e-229 797.0 575 69.9
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 2.2e-225 785.8 566 70.3
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 2.9e-225 785.4 576 69.4
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 2.9e-225 785.4 570 70.0
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 3.7e-225 785.0 564 71.1
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 3.7e-225 785.0 569 69.9
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 6.4e-225 784.3 493 77.3
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 8.3e-225 783.9 564 71.1
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 1.1e-224 783.5 564 71.3
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 2.4e-224 782.3 568 71.1
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 2.4e-224 782.3 485 78.8
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 1.6e-223 779.6 568 70.6
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 6.0e-223 777.7 493 76.9
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 5.1e-222 774.6 559 69.8
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 1.1e-221 773.5 500 75.0
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 1.5e-221 773.1 513 73.7
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 3.3e-221 771.9 563 70.2
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 3.3e-221 771.9 491 76.4
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 4.0e-219 765.0 491 76.4
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 2.6e-218 762.3 478 77.8
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 3.4e-218 761.9 560 69.1
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 6.4e-217 757.7 564 67.6
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 1.4e-216 756.5 559 68.3
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 5.4e-216 754.6 562 69.0
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 2.1e-215 752.7 560 68.4
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 3.5e-215 751.9 505 72.1
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 6.0e-215 751.1 487 74.5
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 1.0e-214 750.4 484 75.0
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 2.3e-214 749.2 520 71.2
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 2.3e-214 749.2 561 68.6
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 1.5e-213 746.5 531 69.5
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 2.1e-212 742.7 559 66.5
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 1.8e-211 739.6 484 74.4
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 2.4e-211 739.2 488 73.2
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 4.0e-211 738.4 481 73.6
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 8.9e-211 737.3 564 66.7
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 1.5e-210 736.5 560 66.6
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 4.4e-210 734.9 531 68.2
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 4.4e-210 734.9 477 73.6
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 4.4e-210 734.9 477 73.6
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 4.4e-210 734.9 474 74.1
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 1.7e-209 733.0 486 72.8
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 2.2e-209 732.6 523 68.5
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 2.9e-209 732.3 574 65.9
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 3.8e-209 731.9 534 68.5
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 8.4e-209 730.7 474 73.4
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 2.4e-208 729.2 474 73.2
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 3.2e-208 728.8 534 67.6
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 1.2e-207 726.9 589 64.9
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 3.5e-207 725.3 564 66.0
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 4.6e-207 724.9 498 70.9
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 6.0e-207 724.5 474 74.1
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 1.3e-206 723.4 503 71.6
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 2.3e-206 722.6 485 72.2
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 3.0e-206 722.2 529 67.9
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 6.6e-206 721.1 477 72.3
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 1.5e-205 719.9 474 73.4
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 1.9e-205 719.5 521 69.3
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 3.3e-205 718.8 469 72.5
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 4.3e-205 718.4 469 73.6
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 4.3e-205 718.4 476 73.3
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 7.3e-205 717.6 474 74.3
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 2.1e-204 716.1 469 72.7
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 2.8e-204 715.7 573 64.7
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 4.8e-204 714.9 546 65.9
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 8.1e-204 714.1 558 66.3
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 1.8e-203 713.0 564 66.0
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.4e-203 712.6 558 66.8
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.1e-203 712.2 561 66.5
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 5.3e-203 711.4 572 65.6
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 6.9e-203 711.1 561 66.8
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 6.9e-203 711.1 496 70.2
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 1.7e-201 706.4 563 65.5
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 4.9e-201 704.9 529 66.0
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 1.9e-200 703.0 498 69.5
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 1.9e-200 703.0 545 65.1
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 1.9e-200 703.0 529 65.8
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 9.3e-200 700.7 497 70.2
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 9.3e-200 700.7 543 66.1
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 1.2e-199 700.3 473 71.7
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 1.6e-199 699.9 459 74.5
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 2.7e-199 699.1 483 71.6
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 1.0e-198 697.2 465 72.5
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 6.6e-198 694.5 570 62.8
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 3.3e-197 692.2 469 68.9
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 4.3e-197 691.8 558 65.1
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 4.3e-197 691.8 505 67.7
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 4.3e-197 691.8 469 72.7
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 7.3e-197 691.0 518 66.4
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.4e-195 686.8 496 67.5
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 4.0e-195 685.3 555 64.3
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 9.0e-195 684.1 561 63.1
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 1.5e-194 683.3 549 64.5
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 2.6e-194 682.6 535 63.2
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 3.4e-194 682.2 484 69.8
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 4.5e-194 681.8 704 54.4
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 2.9e-193 679.1 477 69.4
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.4e-192 676.8 561 64.2
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.4e-192 676.8 458 70.3
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 7.1e-192 674.5 556 60.3
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 3.5e-191 672.2 554 61.0
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 6.0e-191 671.4 520 64.6
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 3.0e-190 669.1 488 63.5
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 6.7e-190 667.9 470 70.4
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 1.5e-189 666.8 477 65.2
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 3.3e-189 665.6 497 63.6
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 6.2e-188 661.4 619 57.7
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 1.7e-185 653.3 477 64.2
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 2.5e-181 639.4 498 62.7
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 3.3e-181 639.0 473 66.0
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 4.5e-178 628.6 620 56.0
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.7e-177 626.7 507 59.6
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 4.6e-175 618.6 569 60.5
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 1.3e-169 600.5 363 79.6
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 3.2e-168 595.9 571 57.3
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 7.2e-168 594.7 366 78.4
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 3.0e-158 562.8 391 68.3
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 4.8e-156 555.4 484 59.1
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 6.5e-153 545.0 493 59.6
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 1.6e-151 540.4 487 54.6
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 1.4e-150 537.3 470 55.5
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.4e-147 527.3 568 52.8
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 2.1e-143 513.5 362 68.5
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 1.2e-138 497.7 361 69.0
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.2e-138 497.7 469 53.7
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 1.6e-138 497.3 407 63.1
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 1.6e-138 497.3 326 73.9
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 4.2e-136 489.2 381 65.4
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.2e-127 461.1 289 74.4
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 4.0e-118 429.5 371 62.0
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 8.9e-110 401.7 287 69.3
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 2.4e-107 393.7 482 45.4
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 3.3e-104 383.3 475 44.4
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 4.3e-104 382.9 243 72.4
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 6.0e-98 362.5 232 76.3
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 7.8e-98 362.1 300 63.7
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.1e-94 351.7 319 61.1
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 2.4e-94 350.5 215 74.9
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 3.1e-94 350.1 219 74.4
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 1.3e-92 344.7 267 64.4
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 2.9e-92 343.6 216 74.1
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 3.5e-90 336.7 453 40.8
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 2.3e-89 334.0 227 69.6
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 1.1e-83 315.1 201 74.1
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 7.3e-80 302.4 202 75.2
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 2.6e-77 293.9 487 36.8
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 1.1e-75 288.5 316 47.2
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 1.5e-69 268.1 265 60.8
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 3.5e-66 256.9 490 35.9
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 3.9e-65 253.4 292 51.0
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 9.0e-62 242.3 188 67.0
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 4.1e-54 216.9 158 67.1
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 5.3e-54 216.5 147 73.5
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 6.7e-49 199.5 277 42.2
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 4.1e-46 190.3 114 79.8
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.9e-43 181.4 125 63.2
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 8.8e-41 172.6 124 63.7
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 9.7e-40 169.1 137 56.9
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 4.2e-35 153.7 153 54.2
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 2.0e-32 144.8 93 68.8
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 2.6e-32 144.4 319 34.2
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 1.1e-30 139.0 318 32.7
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 2.7e-29 134.4 80 77.5
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 2.7e-29 134.4 77 85.7
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 1.0e-28 132.5 88 68.2
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 2.9e-28 131.0 182 45.6
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 2.9e-28 131.0 81 71.6
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 2.5e-27 127.9 101 64.4
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 1.6e-26 125.2 76 75.0
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 1.1e-22 112.5 64 81.2
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 1.8e-22 111.7 64 78.1
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 1.0e-20 105.9 95 54.7
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 2.9e-20 104.4 65 70.8
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 2.5e-19 101.3 84 54.8
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 2.5e-19 101.3 83 62.7
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 3.2e-19 100.9 79 62.0
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 1.2e-18 99.0 78 53.8
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 8.0e-18 96.3 64 64.1
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 1.3e-15 89.0 52 73.1
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 1.0e-12 79.3 51 70.6
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 1.0e-12 79.3 48 81.2
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 3.3e-11 74.3 164 33.5
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.4e-09 68.9 111 40.5
Nn1g08360 Nelumbo nucifera HOM05D003767 ORTHO05D004507 8.3e-07 59.7 63 49.2


User provided reference genes

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