Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 1.3e-202 709.5 353 100.0
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 5.2e-172 607.8 351 86.0
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 5.2e-172 607.8 351 86.0
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 2.0e-171 605.9 351 85.8
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 2.6e-171 605.5 351 86.0
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 1.7e-170 602.8 351 85.2
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 2.2e-170 602.4 351 85.2
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 2.8e-170 602.1 347 86.7
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 3.1e-169 598.6 351 84.9
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 7.7e-168 594.0 347 85.0
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 1.3e-167 593.2 347 85.3
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 5.0e-167 591.3 352 83.8
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 6.5e-167 590.9 351 84.3
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.1e-166 590.1 347 85.9
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 1.9e-166 589.3 351 83.8
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 2.7e-165 585.5 347 84.4
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.3e-164 582.4 350 82.3
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 4.0e-164 581.6 348 84.5
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 6.8e-164 580.9 348 84.2
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 2.6e-163 578.9 349 82.8
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 5.4e-161 571.2 354 80.2
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 7.0e-161 570.9 345 83.2
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 7.0e-161 570.9 347 82.1
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 2.0e-160 569.3 348 81.6
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 3.5e-160 568.5 353 81.6
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 1.0e-159 567.0 352 80.7
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 1.3e-159 566.6 347 83.0
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 1.7e-159 566.2 351 80.1
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 6.6e-159 564.3 347 82.1
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 3.3e-158 562.0 366 77.9
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 2.1e-157 559.3 352 79.0
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 3.6e-157 558.5 383 74.4
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 4.7e-157 558.1 351 79.8
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 1.5e-155 553.1 352 77.8
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 1.5e-155 553.1 347 78.4
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 2.0e-155 552.7 328 83.8
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.2e-154 549.3 356 76.7
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 2.2e-154 549.3 347 77.5
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 2.9e-154 548.9 329 84.2
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 3.7e-154 548.5 354 77.7
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 6.4e-154 547.7 351 77.2
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 1.1e-153 547.0 359 76.6
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 1.4e-153 546.6 347 78.1
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.8e-153 546.2 355 76.9
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 3.2e-153 545.4 347 78.1
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 4.1e-153 545.0 352 77.8
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 5.4e-153 544.7 361 77.0
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 5.4e-153 544.7 332 82.2
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 7.0e-153 544.3 356 76.4
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 1.6e-152 543.1 349 77.4
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 3.5e-152 542.0 352 78.1
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 5.9e-152 541.2 351 77.8
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 3.9e-151 538.5 354 76.6
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 1.9e-150 536.2 354 76.8
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 2.5e-150 535.8 346 78.0
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 3.3e-150 535.4 349 77.4
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 5.6e-150 534.6 354 75.1
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 1.6e-149 533.1 350 76.9
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 1.6e-149 533.1 349 77.4
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 2.8e-149 532.3 349 78.2
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 4.7e-149 531.6 355 77.5
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 2.3e-148 529.3 354 76.0
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 2.3e-148 529.3 351 74.9
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 6.8e-148 527.7 328 80.5
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 6.8e-148 527.7 352 77.3
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.2e-147 526.9 350 76.6
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 1.3e-146 523.5 380 71.3
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 8.3e-146 520.8 333 78.1
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 2.7e-144 515.8 306 84.3
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 3.5e-144 515.4 322 79.5
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 6.0e-144 514.6 353 75.1
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 6.0e-144 514.6 342 76.3
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 7.8e-144 514.2 348 74.4
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 5.0e-143 511.5 330 77.6
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 5.0e-143 511.5 349 75.1
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 6.6e-143 511.1 354 73.4
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 1.1e-142 510.4 333 75.4
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 1.9e-142 509.6 328 77.1
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 3.3e-142 508.8 410 67.3
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 4.3e-142 508.4 347 73.5
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 5.6e-142 508.1 327 79.2
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 1.2e-141 506.9 332 76.5
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 8.1e-141 504.2 338 73.7
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 2.3e-140 502.7 329 75.4
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 4.4e-139 498.4 351 72.6
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 2.2e-138 496.1 355 73.0
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 2.9e-138 495.7 371 68.7
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 5.4e-137 491.5 338 72.5
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 5.4e-137 491.5 352 71.6
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.2e-136 490.3 330 75.2
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 2.1e-136 489.6 357 69.7
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 3.5e-136 488.8 339 75.2
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 3.5e-136 488.8 332 74.1
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 4.6e-136 488.4 338 72.5
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 6.0e-136 488.0 324 73.8
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 8.6e-135 484.2 345 70.1
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 1.1e-134 483.8 330 75.8
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 1.1e-134 483.8 332 73.5
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 4.3e-134 481.9 345 70.1
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 9.5e-134 480.7 342 71.6
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 1.2e-133 480.3 349 69.3
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 1.6e-133 479.9 330 72.1
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 2.8e-133 479.2 336 70.8
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 3.6e-133 478.8 330 74.8
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 4.7e-133 478.4 338 71.3
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 1.8e-132 476.5 348 68.1
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 1.8e-132 476.5 367 69.2
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 4.0e-132 475.3 344 69.2
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 8.9e-132 474.2 344 69.2
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 2.0e-131 473.0 317 75.7
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 2.6e-131 472.6 355 68.2
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 3.4e-131 472.2 349 67.9
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 4.4e-131 471.9 349 67.9
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 4.4e-131 471.9 313 75.7
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 5.8e-131 471.5 353 67.7
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 1.3e-130 470.3 365 66.0
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 1.3e-130 470.3 347 70.6
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 3.8e-130 468.8 327 74.0
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 8.4e-130 467.6 326 70.2
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 7.1e-129 464.5 329 71.7
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 2.1e-128 463.0 315 74.0
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 6.0e-128 461.5 325 71.1
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 1.1e-126 457.2 269 85.1
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 1.8e-124 449.9 331 68.6
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 8.9e-124 447.6 353 66.3
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 1.3e-122 443.7 275 82.9
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 2.9e-122 442.6 355 67.0
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 2.7e-120 436.0 532 47.7
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 7.3e-118 427.9 286 79.7
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 1.1e-116 424.1 268 79.5
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 5.5e-105 385.2 351 60.1
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 9.6e-102 374.4 226 82.3
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 3.1e-100 369.4 350 55.7
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 1.2e-99 367.5 333 55.9
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 4.8e-93 345.5 279 65.6
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 3.8e-90 335.9 290 59.0
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.4e-89 334.0 230 74.8
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 4.2e-89 332.4 242 69.4
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.3e-87 327.4 206 80.6
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 3.3e-86 322.8 267 64.0
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 3.7e-85 319.3 202 79.2
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 8.5e-82 308.1 231 70.6
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 2.6e-78 296.6 188 80.3
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 2.6e-75 286.6 163 87.7
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 9.7e-70 268.1 379 42.0
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 8.0e-64 248.4 161 74.5
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 1.8e-63 247.3 214 60.7
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.2e-62 244.6 164 75.0
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 1.5e-62 244.2 187 67.4
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 7.7e-59 231.9 187 66.8
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 1.1e-52 211.5 144 73.6
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 2.4e-52 210.3 270 47.0
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 4.5e-51 206.1 197 56.9
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 1.1e-49 201.4 329 41.3
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 4.5e-43 179.5 115 80.0
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.1e-36 158.3 139 59.0
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 4.1e-28 129.8 378 32.8
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 5.4e-28 129.4 259 36.7
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 2.7e-27 127.1 251 34.3
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 4.3e-25 119.8 66 81.8
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 1.8e-23 114.4 63 88.9
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 2.6e-22 110.5 63 81.0
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.3e-21 108.2 206 36.4
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 7.1e-20 102.4 60 85.0
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 3.9e-18 96.7 86 61.6
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.9e-17 94.4 57 78.9
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 1.4e-12 78.2 78 52.6
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 3.5e-11 73.6 55 63.6
Gohir.D08G092932 Gossypium hirsutum HOM05D004315 ORTHO05D217518 2.4e-07 60.8 57 54.4
Cfa023540 Carpinus fangiana HOM05D000112 ORTHO05D001327 3.1e-07 60.5 35 77.1
VMungo1383G0961 Vigna mungo HOM05D001558 ORTHO05D005808 2.6e-06 57.4 52 53.8


User provided reference genes

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