Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 0.0e+00 2013.8 1026 100.0
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 0.0e+00 1451.4 1033 72.4
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 0.0e+00 1449.5 1042 72.2
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1448.7 1029 72.4
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1448.0 1025 72.2
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1446.8 1028 72.3
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 0.0e+00 1442.2 1023 72.4
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1437.6 1022 72.0
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 0.0e+00 1435.2 1013 72.3
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 0.0e+00 1430.2 1021 71.2
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 0.0e+00 1428.7 1022 71.1
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1426.8 1021 71.6
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1426.4 1027 71.3
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 0.0e+00 1425.6 1022 71.1
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1424.1 1028 71.6
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1424.1 1023 71.8
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 0.0e+00 1421.0 1024 71.2
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1418.7 1039 71.2
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1412.5 1039 71.0
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 0.0e+00 1411.7 1004 72.5
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1401.3 1034 70.2
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1401.3 1003 71.2
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1399.4 1013 70.5
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1399.0 1021 70.9
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1398.6 1027 70.2
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 0.0e+00 1397.1 1040 70.1
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1396.3 1006 70.9
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1391.7 1042 69.5
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 0.0e+00 1388.2 1022 70.2
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1385.5 1020 70.7
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 0.0e+00 1385.5 1032 69.7
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1384.4 1035 69.5
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1380.9 973 72.5
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1379.8 1011 69.7
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 0.0e+00 1379.0 1031 69.1
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1378.6 1012 70.4
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 0.0e+00 1378.2 1082 67.4
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 0.0e+00 1377.5 1022 69.8
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1377.1 1029 69.3
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1377.1 1031 69.4
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1375.9 1012 70.3
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1373.6 1001 70.4
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 0.0e+00 1372.8 1030 69.8
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 0.0e+00 1372.1 1042 67.9
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1369.8 1003 70.4
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1369.4 1027 69.1
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1369.4 1035 68.7
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1367.8 1029 68.7
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1367.8 1034 68.6
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 0.0e+00 1365.1 1005 70.0
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1364.0 1003 69.4
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1361.3 1025 69.3
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 0.0e+00 1361.3 1023 68.4
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1359.7 1058 67.7
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 0.0e+00 1359.0 1024 68.7
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1354.0 1062 67.2
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1353.2 1005 69.2
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 0.0e+00 1350.9 1011 69.4
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1347.4 1006 69.4
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1346.6 1017 68.6
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 0.0e+00 1343.2 1015 68.5
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 0.0e+00 1340.5 1009 69.1
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1338.2 1028 68.9
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1338.2 1028 68.9
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 1334.3 1019 67.8
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 0.0e+00 1334.3 1011 69.0
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1332.0 1027 68.3
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 0.0e+00 1331.2 1045 67.0
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 0.0e+00 1330.1 1011 68.7
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 0.0e+00 1327.4 1020 68.3
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1325.1 1029 66.7
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1320.4 1023 66.4
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 0.0e+00 1320.1 1005 67.6
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 0.0e+00 1317.0 1016 67.9
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1311.6 1069 64.8
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1309.3 1003 68.0
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1307.7 1027 66.8
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 0.0e+00 1299.6 991 66.0
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1298.1 1037 65.5
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1298.1 1021 65.7
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 0.0e+00 1296.2 984 68.1
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 0.0e+00 1295.4 1025 65.7
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1293.9 1021 65.4
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 0.0e+00 1292.7 1016 67.2
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 0.0e+00 1291.9 986 67.3
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1291.6 999 66.9
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 0.0e+00 1291.6 983 67.9
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1290.8 1021 65.6
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 0.0e+00 1290.4 983 68.3
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1289.2 986 67.3
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1286.2 999 66.7
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 0.0e+00 1285.0 1005 67.1
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1281.2 1040 64.9
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1278.8 933 70.1
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 0.0e+00 1278.5 1031 66.3
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 0.0e+00 1276.5 1007 64.9
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 0.0e+00 1276.2 1005 65.7
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 0.0e+00 1276.2 1050 64.9
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1274.6 888 73.9
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1269.2 892 74.4
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1268.4 986 66.5
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1266.1 987 66.6
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1265.4 987 66.5
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1262.7 988 66.1
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1261.5 1033 64.1
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 0.0e+00 1251.5 990 64.5
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1246.5 914 71.0
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 0.0e+00 1245.0 1045 64.1
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1243.8 1005 64.6
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 0.0e+00 1234.2 1013 65.1
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1226.8 1026 63.5
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1225.3 1000 65.3
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1224.2 1005 64.1
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1216.1 1011 64.0
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 0.0e+00 1212.2 1031 62.9
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 0.0e+00 1203.3 1018 62.8
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 0.0e+00 1202.6 1039 62.1
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 0.0e+00 1168.7 926 65.4
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 0.0e+00 1159.1 1020 62.0
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 0.0e+00 1152.9 1021 59.5
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 0.0e+00 1137.1 1011 61.1
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1126.7 1026 61.0
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1117.8 1028 60.2
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 0.0e+00 1101.7 1009 59.2
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1090.9 1000 58.3
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 0.0e+00 1080.5 1064 57.3
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 0.0e+00 1076.6 1039 56.5
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1075.1 850 65.2
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 1.8e-281 973.0 985 54.9
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 2.3e-281 972.6 1031 54.9
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 3.5e-277 958.7 915 56.6
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 2.3e-268 929.5 784 64.8
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 2.6e-264 916.0 720 69.2
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 1.1e-262 910.6 853 58.9
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 1.7e-260 903.3 993 50.8
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 4.3e-243 845.5 758 62.8
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 2.4e-241 839.7 1024 47.6
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.5e-240 837.0 976 48.8
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 5.8e-232 808.5 980 47.8
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 1.2e-229 800.8 1018 45.9
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 3.5e-229 799.3 831 51.4
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 3.8e-223 779.2 817 52.4
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 9.0e-201 704.9 909 46.3
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 3.6e-197 693.0 725 58.8
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 2.0e-184 650.6 647 55.6
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 8.0e-173 612.1 829 46.8
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 7.0e-169 599.0 632 54.7
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 3.4e-163 580.1 958 39.2
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 8.0e-157 558.9 670 50.6
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 4.1e-153 546.6 632 51.1
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.9e-145 521.2 613 50.9
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 1.3e-135 488.4 1148 32.7
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 8.4e-122 442.6 647 43.3
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 2.1e-117 427.9 381 56.4
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 4.5e-107 393.7 548 44.2
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.1e-100 372.5 270 71.9
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 2.2e-85 321.6 229 72.1
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 5.5e-81 307.0 267 61.0
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 9.4e-81 306.2 314 56.4
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 4.8e-69 267.3 703 31.6
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 5.3e-60 237.3 301 46.5
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 7.0e-52 210.3 520 31.7
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 8.5e-50 203.4 213 48.8
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 1.2e-46 193.0 912 23.1
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 3.7e-45 188.0 154 61.0
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 2.3e-42 178.7 216 44.0
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 1.1e-41 176.4 174 52.9
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 8.9e-39 166.8 153 56.2
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 5.0e-34 151.0 143 49.0
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 1.1e-33 149.8 178 50.6
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 8.6e-26 123.6 128 49.2
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 5.4e-20 104.4 112 47.3
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 1.3e-18 99.8 124 41.9
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 1.7e-18 99.4 124 41.9
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 1.2e-14 86.7 63 74.6
Hma1.2p1_0417F.1_g148820 Hydrangea macrophylla HOM05D000825 ORTHO05D003684 5.8e-14 84.3 54 77.8
Medtr3g006170 Medicago truncatula HOM05D003977 ORTHO05D004536 4.7e-08 64.7 63 47.6


User provided reference genes

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