Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G0365 Punica granatum HOM05D005750 ORTHO05D007126 4.8e-142 508.4 255 100.0
CiPaw.09G205200 Carya illinoinensis HOM05D005750 ORTHO05D007126 9.3e-114 414.5 270 76.3
QL07p036167 Quercus lobata HOM05D005750 ORTHO05D007126 2.1e-113 413.3 274 78.5
Eucgr.B02764 Eucalyptus grandis HOM05D005750 ORTHO05D007126 1.8e-112 410.2 255 80.4
Thecc.05G023200 Theobroma cacao HOM05D005750 ORTHO05D007126 3.0e-112 409.5 266 75.9
Gohir.A01G224900 Gossypium hirsutum HOM05D005750 ORTHO05D007126 8.7e-112 407.9 270 74.8
Gohir.D01G214500 Gossypium hirsutum HOM05D005750 ORTHO05D007126 8.7e-112 407.9 270 74.8
arahy.Tifrunner.gnm1.ann1.CU0EG8 Arachis hypogaea HOM05D005750 ORTHO05D007126 2.5e-111 406.4 267 75.3
Ciclev10012396m.g Citrus clementina HOM05D005750 ORTHO05D007126 2.5e-111 406.4 265 75.1
ClCG10G021760 Citrullus lanatus HOM05D005750 ORTHO05D007126 4.3e-111 405.6 268 75.4
Gorai.002G260600 Gossypium raimondii HOM05D005750 ORTHO05D007126 4.3e-111 405.6 270 74.4
Dinv37089 Davidia involucrata HOM05D005750 ORTHO05D007126 7.4e-111 404.8 257 77.0
Dinv35517 Davidia involucrata HOM05D005750 ORTHO05D007126 9.7e-111 404.4 264 75.0
Duzib093G0788 Durio zibethinus HOM05D005750 ORTHO05D007126 9.7e-111 404.4 269 74.7
Sed0027096 Sechium edule HOM05D005750 ORTHO05D007126 1.6e-110 403.7 261 77.0
arahy.Tifrunner.gnm1.ann1.2Q187C Arachis hypogaea HOM05D005750 ORTHO05D007126 2.8e-110 402.9 264 75.4
CsaV3_3G034210 Cucumis sativus L. HOM05D005750 ORTHO05D007126 2.8e-110 402.9 268 75.0
Actinidia13787 Actinidia chinensis HOM05D005750 ORTHO05D007126 6.3e-110 401.7 259 75.7
MELO3C009196.2 Cucumis melo HOM05D005750 ORTHO05D007126 6.3e-110 401.7 268 74.6
Lalb_Chr07g0193351 Lupinus albus HOM05D005750 ORTHO05D007126 8.2e-110 401.4 267 75.3
Lj3g0021719 Lotus japonicus HOM05D005750 ORTHO05D007126 1.4e-109 400.6 264 76.9
MD04G1146200 Malus domestica HOM05D005750 ORTHO05D007126 1.4e-109 400.6 265 75.5
MD12G1159400 Malus domestica HOM05D005750 ORTHO05D007126 1.8e-109 400.2 267 76.0
FAN02G3889 Fragaria x ananassa HOM05D005750 ORTHO05D007126 2.4e-109 399.8 269 74.0
Duzib128G1738 Durio zibethinus HOM05D005750 ORTHO05D007126 3.1e-109 399.4 268 74.6
FvH4_6g12170 Fragaria vesca HOM05D005750 ORTHO05D007126 3.1e-109 399.4 269 74.0
FAN09G4178 Fragaria x ananassa HOM05D005750 ORTHO05D007126 3.1e-109 399.4 269 74.0
vmacro20231 Vaccinium macrocarpon HOM05D005750 ORTHO05D007126 3.1e-109 399.4 265 74.3
Atru.chr8.2137 Acer truncatum HOM05D005750 ORTHO05D007126 4.1e-109 399.1 266 76.3
RcHm_v2.0_Chr3g0463971 Rosa chinensis HOM05D005750 ORTHO05D007126 4.1e-109 399.1 265 74.3
FAN14G0046 Fragaria x ananassa HOM05D005750 ORTHO05D007126 6.9e-109 398.3 269 73.6
FAN14G1750 Fragaria x ananassa HOM05D005750 ORTHO05D007126 6.9e-109 398.3 269 73.6
Lj2A78G34 Lonicera japonica HOM05D005750 ORTHO05D007126 6.9e-109 398.3 259 74.9
Prupe.6G269800 Prunus persica HOM05D005750 ORTHO05D007126 1.2e-108 397.5 265 74.7
COL.COLO4_14617 Corchorus olitorius HOM05D005750 ORTHO05D007126 1.5e-108 397.1 290 72.8
TPR.G5219 Trifolium pratense HOM05D005750 ORTHO05D007126 2.0e-108 396.7 268 75.0
Glyma.01G110900 Glycine max HOM05D005750 ORTHO05D007126 3.8e-107 392.5 264 73.9
Nitab4.5_0000119g0240 Nicotiana tabacum HOM05D005750 ORTHO05D007126 3.8e-107 392.5 265 73.6
CANSAT35G0049 Cannabis sativa HOM05D005750 ORTHO05D007126 5.0e-107 392.1 265 72.8
VMungo0331G1407 Vigna mungo HOM05D005750 ORTHO05D007126 5.0e-107 392.1 263 73.4
CSS0046643 Camellia sinensis var. sinensis HOM05D005750 ORTHO05D007126 8.5e-107 391.3 265 73.2
Cpa.g.sc56.104 Carica papaya HOM05D005750 ORTHO05D007126 1.1e-106 391.0 261 73.6
Manes.09G101500 Manihot esculenta HOM05D005750 ORTHO05D007126 1.9e-106 390.2 261 74.3
Aqoxy1G00732 Aquilegia oxysepala HOM05D005750 ORTHO05D007126 2.5e-106 389.8 268 72.8
Phvul.010G008000 Phaseolus vulgaris HOM05D005750 ORTHO05D007126 2.5e-106 389.8 265 73.2
DCAR_028833 Daucus carota HOM05D005750 ORTHO05D007126 3.2e-106 389.4 263 74.5
CAN.G351.8 Capsicum annuum HOM05D005750 ORTHO05D007126 1.6e-105 387.1 268 71.3
Potri.016G110300 Populus trichocarpa HOM05D005750 ORTHO05D007126 1.0e-104 384.4 259 74.5
TWI74G1070 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 1.4e-104 384.0 265 73.6
TAR636G2178 Trochodendron aralioides HOM05D005750 ORTHO05D007126 1.8e-104 383.6 255 73.7
MBI14_g32934_MAGBIO Magnolia biondii HOM05D005750 ORTHO05D007126 2.3e-104 383.3 262 72.1
Peaxi162Scf00014g00091 Petunia axillaris HOM05D005750 ORTHO05D007126 2.3e-104 383.3 265 71.7
EL10Ac5g11550 Beta vulgaris HOM05D005750 ORTHO05D007126 6.7e-104 381.7 264 72.3
Psat7g247000 Pisum sativum HOM05D005750 ORTHO05D007126 1.1e-103 380.9 265 72.8
Sopen10g036170 Solanum pennellii HOM05D005750 ORTHO05D007126 1.1e-103 380.9 264 72.0
Ah.11g045300 Amaranthus hybridus HOM05D005750 ORTHO05D007126 1.5e-103 380.6 265 72.8
Cc06_g01740 Coffea canephora HOM05D005750 ORTHO05D007126 1.5e-103 380.6 263 73.0
Hund15288 Selenicereus undatus HOM05D005750 ORTHO05D007126 2.6e-103 379.8 266 69.9
Medtr4g014710 Medicago truncatula HOM05D005750 ORTHO05D007126 4.4e-103 379.0 266 72.9
THA.LOC104823389 Tarenaya hassleriana HOM05D005750 ORTHO05D007126 5.7e-103 378.6 270 70.7
Migut.J00232 Erythranthe guttata HOM05D005750 ORTHO05D007126 1.3e-102 377.5 240 77.1
Glyma.03G076500 Glycine max HOM05D005750 ORTHO05D007126 1.3e-102 377.5 277 69.3
Lsat_1_v5_gn_8_99481 Lactuca sativa HOM05D005750 ORTHO05D007126 1.7e-102 377.1 215 83.3
TWI53G0977 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 2.8e-102 376.3 266 73.3
AUR62042943 Chenopodium quinoa HOM05D005750 ORTHO05D007126 8.2e-102 374.8 264 70.8
TAR623G1708 Trochodendron aralioides HOM05D005750 ORTHO05D007126 1.4e-101 374.0 271 67.9
unitig_46.g18409 Utricularia gibba HOM05D005750 ORTHO05D007126 6.9e-101 371.7 251 73.3
MSTRG.26795 Avicennia marina HOM05D005750 ORTHO05D007126 1.2e-100 370.9 262 70.6
Thhalv10010608m.g Eutrema salsugineum HOM05D005750 ORTHO05D007126 1.2e-100 370.9 273 68.9
GSVIVG01034019001 Vitis vinifera HOM05D005750 ORTHO05D007126 2.0e-100 370.2 257 72.0
Sc01g0006740 Simmondsia chinensis HOM05D005750 ORTHO05D007126 3.4e-100 369.4 260 70.0
HanXRQChr16g0510541 Helianthus annuus HOM05D005750 ORTHO05D007126 1.7e-99 367.1 251 72.9
AT3G54130 Arabidopsis thaliana HOM05D005750 ORTHO05D007126 2.2e-99 366.7 271 69.4
AL5G35150 Arabidopsis lyrata HOM05D005750 ORTHO05D007126 5.0e-99 365.5 274 69.0
Carub.0005s2072 Capsella rubella HOM05D005750 ORTHO05D007126 5.0e-99 365.5 271 69.0
C04p38380 Brassica napus HOM05D005750 ORTHO05D007126 6.5e-99 365.2 274 68.2
CARHR164010 Cardamine hirsuta HOM05D005750 ORTHO05D007126 6.5e-99 365.2 274 68.2
BcaC02g09095 Brassica carinata HOM05D005750 ORTHO05D007126 8.5e-99 364.8 274 68.2
BolC4t25415H Brassica oleracea HOM05D005750 ORTHO05D007126 8.5e-99 364.8 274 68.2
PSO384G4196 Papaver somniferum HOM05D005750 ORTHO05D007126 1.4e-98 364.0 265 69.8
Sabra16G0106800 Salix brachista HOM05D005750 ORTHO05D007126 2.5e-98 363.2 271 70.1
Sed0026182 Sechium edule HOM05D005750 ORTHO05D007126 3.2e-98 362.8 262 69.8
Aa31sc171G20 Aethionema arabicum HOM05D005750 ORTHO05D007126 5.5e-98 362.1 270 67.8
A04p05670 Brassica napus HOM05D005750 ORTHO05D007126 1.6e-97 360.5 276 67.4
PSO339G6575 Papaver somniferum HOM05D005750 ORTHO05D007126 1.6e-97 360.5 265 69.4
Hma1.2p1_0763F.1_g214560 Hydrangea macrophylla HOM05D005750 ORTHO05D007126 2.1e-97 360.1 254 68.9
Sp5g08260 Schrenkiella parvula HOM05D005750 ORTHO05D007126 2.1e-97 360.1 268 68.3
Rhsim05G0204700 Rhododendron simsii HOM05D005750 ORTHO05D007126 2.7e-97 359.8 293 63.8
Sabra06G0073600 Salix brachista HOM05D005750 ORTHO05D007126 2.7e-97 359.8 302 62.3
BraA04t16263Z Brassica rapa HOM05D005750 ORTHO05D007126 3.6e-97 359.4 276 67.0
A09p47130 Brassica napus HOM05D005750 ORTHO05D007126 7.9e-97 358.2 275 66.5
BraA09t40175Z Brassica rapa HOM05D005750 ORTHO05D007126 7.9e-97 358.2 275 66.5
BcaB02g08472 Brassica carinata HOM05D005750 ORTHO05D007126 1.8e-96 357.1 269 68.0
Potri.006G095700 Populus trichocarpa HOM05D005750 ORTHO05D007126 2.3e-96 356.7 232 75.0
C08p29390 Brassica napus HOM05D005750 ORTHO05D007126 5.2e-96 355.5 275 65.8
BolC8t50540H Brassica oleracea HOM05D005750 ORTHO05D007126 5.2e-96 355.5 275 65.8
Oeu004613.2 Olea europaea HOM05D005750 ORTHO05D007126 1.5e-95 354.0 295 62.4
CDE02G4717 Ceratophyllum demersum HOM05D005750 ORTHO05D007126 2.6e-95 353.2 268 66.0
Haze_20940 Corylus avellana HOM05D005750 ORTHO05D007126 5.7e-95 352.1 264 67.8
SGA_v2.0_scaffold240G44116 Striga asiatica HOM05D005750 ORTHO05D007126 1.7e-94 350.5 250 70.4
Zm00001eb367490 Zea mays HOM05D005750 ORTHO05D007126 1.2e-92 344.4 263 64.6
BcaB01g00216 Brassica carinata HOM05D005750 ORTHO05D007126 7.7e-92 341.7 212 75.5
Os01g0851400 Oryza sativa ssp. japonica HOM05D005750 ORTHO05D007126 7.7e-92 341.7 258 65.1
Zm00001eb147810 Zea mays HOM05D005750 ORTHO05D007126 7.7e-92 341.7 262 64.9
SEGI_00199 Sequoiadendron giganteum HOM05D005750 ORTHO05D007126 5.7e-87 325.5 260 61.5
Actinidia29137 Actinidia chinensis HOM05D005750 ORTHO05D007126 3.0e-80 303.1 220 70.5
Gohir.D04G128250 Gossypium hirsutum HOM05D005750 ORTHO05D007126 4.4e-79 299.3 248 63.3
CiPaw.10G154000 Carya illinoinensis HOM05D005750 ORTHO05D007126 1.7e-78 297.4 258 62.8
Gorai.012G111300 Gossypium raimondii HOM05D005750 ORTHO05D007126 6.5e-75 285.4 244 61.9
SGA_v2.0_scaffold85G26769 Striga asiatica HOM05D005750 ORTHO05D007126 1.1e-74 284.6 217 65.0
ECA236G1744 Erigeron canadensis HOM05D005750 ORTHO05D007126 2.8e-73 280.0 181 75.1
TPR.G5190 Trifolium pratense HOM05D005750 ORTHO05D007126 2.6e-71 273.5 228 59.6
HPP92_018186 Vanilla planifolia HOM05D005750 ORTHO05D007126 3.7e-70 269.6 253 56.1
Ca_23809_v3 Cicer arietinum L. HOM05D005750 ORTHO05D007126 1.1e-69 268.1 175 73.7
PGSC0003DMG400019130 Solanum tuberosum HOM05D005750 ORTHO05D007126 5.6e-66 255.8 173 72.3
Nn2g13588 Nelumbo nucifera HOM05D005750 ORTHO05D007126 1.4e-64 251.1 174 70.1
AUR62025787 Chenopodium quinoa HOM05D005750 ORTHO05D007126 1.2e-63 248.1 173 69.4
AagrBONN_evm.TU.Sc2ySwM_344.3267 Anthoceros agrestis HOM05D005750 ORTHO05D007126 2.9e-62 243.4 217 55.8
CBR_g865 Chara braunii HOM05D005750 ORTHO05D007126 2.9e-62 243.4 275 47.3
Solyc10g086770.3 Solanum lycopersicum HOM05D005750 ORTHO05D007126 6.4e-62 242.3 173 68.8
Pp3c7_8520 Physcomitrium patens HOM05D005750 ORTHO05D007126 1.1e-61 241.5 254 48.4
Nitab4.5_0006439g0020 Nicotiana tabacum HOM05D005750 ORTHO05D007126 9.5e-50 201.8 268 47.4
SMO203G0145 Selaginella moellendorffii HOM05D005750 ORTHO05D007126 8.1e-49 198.7 182 54.4
Cre11.g475450 Chlamydomonas reinhardtii HOM05D005750 ORTHO05D007126 1.2e-44 184.9 233 43.3
TAR636G1840 Trochodendron aralioides HOM05D005750 ORTHO05D007126 2.0e-39 167.5 166 54.2
MCO10G202 Micromonas commoda HOM05D005750 ORTHO05D007126 9.2e-37 158.7 290 33.4
TAR402G0002 Trochodendron aralioides HOM05D005750 ORTHO05D007126 3.8e-30 136.7 94 75.5
Ca_23812_v3 Cicer arietinum L. HOM05D005750 ORTHO05D007126 2.3e-27 127.5 89 77.5
PRCOL_00002333 Prasinoderma coloniale HOM05D005750 ORTHO05D007126 7.3e-26 122.5 269 33.1
Haze_26299 Corylus avellana HOM05D005750 ORTHO05D007126 4.8e-25 119.8 178 38.8
ATR0618G451 Amborella trichopoda HOM05D005750 ORTHO05D007126 9.0e-24 115.5 58 91.4
Nn2g11345 Nelumbo nucifera HOM05D005750 ORTHO05D007126 2.2e-22 110.9 54 96.3
A04p05660 Brassica napus HOM05D005750 ORTHO05D007126 1.1e-18 98.6 52 86.5
FvH4_5g19731 Fragaria vesca HOM05D005750 ORTHO05D035649 5.8e-07 59.7 60 58.3
FvH4_2g13931 Fragaria vesca HOM05D051764 ORTHO05D035649 2.9e-06 57.4 53 62.3
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 4.9e-06 56.6 196 28.1
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 8.4e-06 55.8 173 28.9
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 8.4e-06 55.8 186 25.3


User provided reference genes

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