Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G0259 Punica granatum HOM05D005066 ORTHO05D006138 1.0e-209 733.0 347 100.0
Manes.18G005800 Manihot esculenta HOM05D005066 ORTHO05D006138 1.2e-181 639.8 351 82.9
Duzib093G2109 Durio zibethinus HOM05D005066 ORTHO05D006138 4.7e-178 627.9 352 81.0
Thecc.08G057800 Theobroma cacao HOM05D005066 ORTHO05D006138 1.4e-177 626.3 352 80.4
Potri.005G249800 Populus trichocarpa HOM05D005066 ORTHO05D006138 1.8e-177 625.9 352 81.0
Cpa.g.sc26.207 Carica papaya HOM05D005066 ORTHO05D006138 2.6e-176 622.1 352 80.7
Prupe.1G355000 Prunus persica HOM05D005066 ORTHO05D006138 7.6e-176 620.5 352 80.1
Eucgr.F03549 Eucalyptus grandis HOM05D005066 ORTHO05D006138 4.9e-175 617.8 352 79.8
CiPaw.07G139500 Carya illinoinensis HOM05D005066 ORTHO05D006138 2.1e-173 612.5 352 79.8
Ciclev10001617m.g Citrus clementina HOM05D005066 ORTHO05D006138 1.3e-172 609.8 361 78.7
Gohir.A05G254700 Gossypium hirsutum HOM05D005066 ORTHO05D006138 2.3e-172 609.0 352 79.0
MD15G1002700 Malus domestica HOM05D005066 ORTHO05D006138 2.3e-172 609.0 350 79.1
Potri.002G011200 Populus trichocarpa HOM05D005066 ORTHO05D006138 3.0e-172 608.6 355 78.6
THA.LOC104813757 Tarenaya hassleriana HOM05D005066 ORTHO05D006138 3.9e-172 608.2 352 77.8
GSVIVG01008680001 Vitis vinifera HOM05D005066 ORTHO05D006138 6.6e-172 607.4 352 79.8
TWI36G1160 Tripterygium wilfordii HOM05D005066 ORTHO05D006138 3.3e-171 605.1 353 78.5
Cfa014063 Carpinus fangiana HOM05D005066 ORTHO05D006138 5.6e-171 604.4 352 78.7
Oeu011330.2 Olea europaea HOM05D005066 ORTHO05D006138 7.3e-171 604.0 351 78.6
CSS0029951 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 1.3e-170 603.2 352 78.7
Actinidia37971 Actinidia chinensis HOM05D005066 ORTHO05D006138 1.1e-169 600.1 352 78.7
Lalb_Chr23g0265821 Lupinus albus HOM05D005066 ORTHO05D006138 1.1e-169 600.1 350 77.7
AT1G20540 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 1.4e-169 599.7 350 78.0
Hma1.2p1_0507F.1_g168410 Hydrangea macrophylla HOM05D005066 ORTHO05D006138 2.4e-169 599.0 350 77.1
AL1G33470 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 3.1e-169 598.6 350 78.0
Thhalv10008062m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 4.5e-168 594.7 350 77.4
Carub.0001s2001 Capsella rubella HOM05D005066 ORTHO05D006138 7.6e-168 594.0 350 77.7
Dinv31933 Davidia involucrata HOM05D005066 ORTHO05D006138 7.6e-168 594.0 339 79.4
Lj1g0027661 Lotus japonicus HOM05D005066 ORTHO05D006138 1.7e-167 592.8 351 76.6
Ca_15439_v3 Cicer arietinum L. HOM05D005066 ORTHO05D006138 3.8e-167 591.7 351 76.9
BcaB07g32052 Brassica carinata HOM05D005066 ORTHO05D006138 4.9e-167 591.3 347 77.5
VMungo1309G2329 Vigna mungo HOM05D005066 ORTHO05D006138 4.9e-167 591.3 351 76.4
FvH4_2g37550 Fragaria vesca HOM05D005066 ORTHO05D006138 8.4e-167 590.5 352 77.0
FAN20G0881 Fragaria x ananassa HOM05D005066 ORTHO05D006138 8.4e-167 590.5 352 77.3
Gorai.009G267800 Gossypium raimondii HOM05D005066 ORTHO05D006138 8.4e-167 590.5 339 79.1
FAN15G0307 Fragaria x ananassa HOM05D005066 ORTHO05D006138 2.4e-166 589.0 352 77.0
A06p16540 Brassica napus HOM05D005066 ORTHO05D006138 3.2e-166 588.6 350 76.6
BraA06t24760Z Brassica rapa HOM05D005066 ORTHO05D006138 3.2e-166 588.6 350 76.6
RcHm_v2.0_Chr6g0304181 Rosa chinensis HOM05D005066 ORTHO05D006138 3.2e-166 588.6 352 76.4
MD08G1003000 Malus domestica HOM05D005066 ORTHO05D006138 9.3e-166 587.0 350 76.6
Glyma.06G018800 Glycine max HOM05D005066 ORTHO05D006138 1.6e-165 586.3 351 76.4
Sp1g18250 Schrenkiella parvula HOM05D005066 ORTHO05D006138 1.3e-164 583.2 350 75.7
MSTRG.27774 Avicennia marina HOM05D005066 ORTHO05D006138 1.8e-164 582.8 350 74.6
TPR.G38213 Trifolium pratense HOM05D005066 ORTHO05D006138 2.3e-164 582.4 351 75.8
CANSAT25G3513 Cannabis sativa HOM05D005066 ORTHO05D006138 3.9e-164 581.6 354 76.6
CsaV3_6G031630 Cucumis sativus L. HOM05D005066 ORTHO05D006138 3.9e-164 581.6 350 75.4
Phvul.009G010100 Phaseolus vulgaris HOM05D005066 ORTHO05D006138 5.1e-164 581.3 351 74.9
Migut.C00955 Erythranthe guttata HOM05D005066 ORTHO05D006138 4.3e-163 578.2 347 76.1
Cc10_g00720 Coffea canephora HOM05D005066 ORTHO05D006138 1.3e-162 576.6 351 75.8
Aa31LG7G4800 Aethionema arabicum HOM05D005066 ORTHO05D006138 3.7e-162 575.1 352 75.3
DCAR_013911 Daucus carota HOM05D005066 ORTHO05D006138 6.2e-162 574.3 336 77.4
Thhalv10018792m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 8.1e-162 573.9 351 74.6
Medtr3g115200 Medicago truncatula HOM05D005066 ORTHO05D006138 1.1e-161 573.5 351 74.4
Sp5g31400 Schrenkiella parvula HOM05D005066 ORTHO05D006138 1.8e-161 572.8 351 73.8
BcaC08g47273 Brassica carinata HOM05D005066 ORTHO05D006138 6.9e-161 570.9 351 74.6
BolC6t40062H Brassica oleracea HOM05D005066 ORTHO05D006138 6.9e-161 570.9 351 74.6
arahy.Tifrunner.gnm1.ann1.B8YF15 Arachis hypogaea HOM05D005066 ORTHO05D006138 1.2e-160 570.1 338 76.0
SGA_v2.0_scaffold108G30855 Striga asiatica HOM05D005066 ORTHO05D006138 1.5e-160 569.7 351 74.1
Aa31LG4G6350 Aethionema arabicum HOM05D005066 ORTHO05D006138 2.6e-160 568.9 351 74.1
arahy.Tifrunner.gnm1.ann1.76XKSK Arachis hypogaea HOM05D005066 ORTHO05D006138 3.4e-160 568.5 337 76.0
MBI05_g05143_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 7.6e-160 567.4 352 73.6
Peaxi162Scf00893g00433 Petunia axillaris HOM05D005066 ORTHO05D006138 7.6e-160 567.4 351 75.5
Sed0022458 Sechium edule HOM05D005066 ORTHO05D006138 2.9e-159 565.5 346 75.4
Lj4C805G13 Lonicera japonica HOM05D005066 ORTHO05D006138 3.8e-159 565.1 353 73.4
Carub.0002s2315 Capsella rubella HOM05D005066 ORTHO05D006138 8.4e-159 563.9 351 74.1
COL.COLO4_03999 Corchorus olitorius HOM05D005066 ORTHO05D006138 8.4e-159 563.9 318 79.9
Rhsim06G0007900 Rhododendron simsii HOM05D005066 ORTHO05D006138 1.1e-158 563.5 374 70.6
AL2G36340 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 4.2e-158 561.6 351 73.5
CANSAT54G1628 Cannabis sativa HOM05D005066 ORTHO05D006138 7.1e-158 560.8 350 74.0
vmacro21822 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 8.7e-156 553.9 318 78.6
FAN27G0843 Fragaria x ananassa HOM05D005066 ORTHO05D006138 1.1e-155 553.5 358 72.1
HanXRQChr14g0428271 Helianthus annuus HOM05D005066 ORTHO05D006138 1.1e-155 553.5 349 73.6
Lsat_1_v5_gn_2_6481 Lactuca sativa HOM05D005066 ORTHO05D006138 1.1e-155 553.5 352 73.3
Nitab4.5_0000588g0150 Nicotiana tabacum HOM05D005066 ORTHO05D006138 1.9e-155 552.7 339 75.2
PSO170G0128 Papaver somniferum HOM05D005066 ORTHO05D006138 7.4e-155 550.8 351 71.2
PSO210G7270 Papaver somniferum HOM05D005066 ORTHO05D006138 4.8e-154 548.1 352 71.3
C06p50230 Brassica napus HOM05D005066 ORTHO05D006138 1.4e-153 546.6 351 72.4
ECA238G2025 Erigeron canadensis HOM05D005066 ORTHO05D006138 4.0e-153 545.0 352 72.7
BraA07t31713Z Brassica rapa HOM05D005066 ORTHO05D006138 1.2e-152 543.5 351 71.8
Aqoxy5G01046 Aquilegia oxysepala HOM05D005066 ORTHO05D006138 1.0e-151 540.4 347 70.6
Sabra05G0193300 Salix brachista HOM05D005066 ORTHO05D006138 1.0e-151 540.4 382 67.0
PGSC0003DMG400009976 Solanum tuberosum HOM05D005066 ORTHO05D006138 1.0e-151 540.4 351 70.9
A07p41830 Brassica napus HOM05D005066 ORTHO05D006138 1.7e-151 539.7 351 71.5
Solyc04g082300.2 Solanum lycopersicum HOM05D005066 ORTHO05D006138 2.2e-151 539.3 351 70.7
Sopen04g035920 Solanum pennellii HOM05D005066 ORTHO05D006138 2.2e-151 539.3 351 70.7
Glyma.04G018500 Glycine max HOM05D005066 ORTHO05D006138 1.4e-150 536.6 317 77.0
AT1G76260 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 4.2e-150 535.0 351 70.9
Gohir.D05G256300 Gossypium hirsutum HOM05D005066 ORTHO05D006138 1.8e-148 529.6 309 79.0
Nn6g31745 Nelumbo nucifera HOM05D005066 ORTHO05D006138 2.3e-148 529.3 339 72.0
CARHR069820 Cardamine hirsuta HOM05D005066 ORTHO05D006138 3.0e-148 528.9 351 70.1
unitig_26.g9893 Utricularia gibba HOM05D005066 ORTHO05D006138 5.7e-147 524.6 350 67.7
Hund05118 Selenicereus undatus HOM05D005066 ORTHO05D006138 2.8e-146 522.3 338 71.6
AUR62043922 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.1e-145 520.4 352 70.7
SalBow7G4394 Salvia bowleyana HOM05D005066 ORTHO05D006138 5.3e-145 518.1 407 60.7
BcaC05g25960 Brassica carinata HOM05D005066 ORTHO05D006138 4.6e-141 505.0 286 79.4
C05p19110 Brassica napus HOM05D005066 ORTHO05D006138 4.6e-141 505.0 286 79.4
BolC5t30611H Brassica oleracea HOM05D005066 ORTHO05D006138 4.6e-141 505.0 286 79.4
AUR62036885 Chenopodium quinoa HOM05D005066 ORTHO05D006138 2.8e-138 495.7 346 67.3
Sc15g0004490 Simmondsia chinensis HOM05D005066 ORTHO05D006138 2.8e-138 495.7 318 70.4
Os08g0554000 Oryza sativa ssp. japonica HOM05D005066 ORTHO05D006138 4.1e-137 491.9 352 64.2
ATR0661G259 Amborella trichopoda HOM05D005066 ORTHO05D006138 2.6e-136 489.2 338 64.2
Zm00001eb039840 Zea mays HOM05D005066 ORTHO05D006138 5.9e-136 488.0 352 64.2
BcaC08g47124 Brassica carinata HOM05D005066 ORTHO05D006138 1.6e-133 479.9 317 71.0
Ah.13g072510 Amaranthus hybridus HOM05D005066 ORTHO05D006138 1.1e-129 467.2 395 58.7
TAR381G1664 Trochodendron aralioides HOM05D005066 ORTHO05D006138 1.1e-129 467.2 318 69.2
BNapus_Darmor_BZH_scaffold_170p00070 Brassica napus HOM05D005066 ORTHO05D006138 1.8e-129 466.5 296 72.6
Psat5g011560 Pisum sativum HOM05D005066 ORTHO05D006138 1.8e-129 466.5 269 77.7
Zm00001eb180420 Zea mays HOM05D005066 ORTHO05D006138 4.5e-128 461.8 352 61.1
EL10Ac1g01978 Beta vulgaris HOM05D005066 ORTHO05D006138 8.5e-127 457.6 296 71.6
MELO3C026544.2 Cucumis melo HOM05D005066 ORTHO05D006138 8.8e-124 447.6 255 77.6
CSS0013002 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 4.4e-115 418.7 353 60.1
QL02p013964 Quercus lobata HOM05D005066 ORTHO05D006138 4.4e-115 418.7 271 70.8
Haze_22764 Corylus avellana HOM05D005066 ORTHO05D006138 6.8e-108 394.8 223 80.7
AUR62043921 Chenopodium quinoa HOM05D005066 ORTHO05D006138 3.5e-96 355.9 201 79.1
Atru.chr13.151 Acer truncatum HOM05D005066 ORTHO05D006138 2.3e-92 343.2 180 85.6
AagrBONN_evm.TU.Sc2ySwM_362.948 Anthoceros agrestis HOM05D005066 ORTHO05D006138 5.2e-84 315.5 355 43.1
CARHR021010 Cardamine hirsuta HOM05D005066 ORTHO05D006138 9.8e-83 311.2 203 70.4
Mapoly0054s0060 Marchantia polymorpha HOM05D005066 ORTHO05D006138 6.4e-82 308.5 358 43.6
Actinidia29788 Actinidia chinensis HOM05D005066 ORTHO05D006138 1.4e-81 307.4 213 68.1
HPP92_008373 Vanilla planifolia HOM05D005066 ORTHO05D006138 4.1e-81 305.8 231 59.7
ClCG08G009490 Citrullus lanatus HOM05D005066 ORTHO05D006138 3.1e-76 289.7 158 80.4
SMO118G0316 Selaginella moellendorffii HOM05D005066 ORTHO05D006138 7.8e-72 275.0 353 39.7
SHI08001 Sapria himalayana HOM05D005066 ORTHO05D006138 8.9e-68 261.5 199 62.3
AUR62043554 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.0e-55 221.5 129 74.4
ClCG00G005440 Citrullus lanatus HOM05D005066 ORTHO05D006138 2.8e-53 213.4 131 72.5
ClCG08G009550 Citrullus lanatus HOM05D005066 ORTHO05D006138 2.7e-48 196.8 125 72.8
Cre02.g109400 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 4.6e-48 196.1 371 29.6
CDE02G3878 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 9.0e-44 181.8 108 74.1
QL02p013958 Quercus lobata HOM05D005066 ORTHO05D006138 4.9e-42 176.0 87 92.0
MBI05_g41554_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 8.7e-39 165.2 128 60.9
Duzib116G0540 Durio zibethinus HOM05D005066 ORTHO05D006138 2.1e-37 160.6 226 40.3
PRCOL_00000380 Prasinoderma coloniale HOM05D005066 ORTHO05D006138 1.5e-27 127.9 299 27.4
SEGI_37952 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 3.2e-25 120.2 81 64.2
CDE04G2988 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 9.4e-25 118.6 72 68.1
vmacro11237 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 1.4e-23 114.8 69 72.5
vmacro11236 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 6.7e-23 112.5 70 70.0
Haze_22758 Corylus avellana HOM05D005066 ORTHO05D006138 1.3e-21 108.2 76 67.1
CBR_g17938 Chara braunii HOM05D005066 ORTHO05D006138 5.3e-20 102.8 210 28.1
Actinidia07458 Actinidia chinensis HOM05D005066 ORTHO05D006138 8.8e-15 85.5 44 86.4
Actinidia09068 Actinidia chinensis HOM05D005066 ORTHO05D006138 2.0e-14 84.3 54 75.9
arahy.Tifrunner.gnm1.ann1.FBZU85 Arachis hypogaea HOM05D005066 ORTHO05D006138 3.3e-14 83.6 144 35.4
arahy.Tifrunner.gnm1.ann1.7RQ6TB Arachis hypogaea HOM05D005066 ORTHO05D006138 4.4e-14 83.2 60 58.3
MCO04G183 Micromonas commoda HOM05D005066 ORTHO05D006138 6.3e-13 79.3 357 21.0
SEGI_07968 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 6.3e-13 79.3 50 66.0
AUR62018933 Chenopodium quinoa HOM05D000030 ORTHO05D000031 1.3e-10 71.6 66 50.0
AUR62038170 Chenopodium quinoa HOM05D000030 ORTHO05D000031 2.2e-10 70.9 42 69.0
Nn4g22810 Nelumbo nucifera HOM05D005066 ORTHO05D006138 1.6e-08 64.7 43 60.5
Cre02.g109150 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 3.6e-08 63.5 64 43.8
SGA_v2.0_scaffold275G46594 Striga asiatica HOM05D005066 ORTHO05D406259 8.0e-08 62.4 155 25.2
Rhsim11G0131900 Rhododendron simsii HOM05D000347 ORTHO05D001997 1.0e-07 62.0 158 22.2
vmacro01787 Vaccinium macrocarpon HOM05D000347 ORTHO05D001997 1.8e-07 61.2 158 22.2
Oeu000196.1 Olea europaea HOM05D000347 ORTHO05D001997 2.3e-07 60.8 175 22.3
SEGI_12583 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 4.0e-07 60.1 46 58.7
AUR62009045 Chenopodium quinoa HOM05D000347 ORTHO05D001997 5.2e-07 59.7 158 22.2
AUR62020617 Chenopodium quinoa HOM05D000347 ORTHO05D001997 5.2e-07 59.7 158 22.2
Lj9A311G56 Lonicera japonica HOM05D000347 ORTHO05D001997 5.2e-07 59.7 158 23.4
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 8.8e-07 58.9 49 55.1
arahy.Tifrunner.gnm1.ann1.YQX6Q2 Arachis hypogaea HOM05D000347 ORTHO05D001997 1.5e-06 58.2 164 24.4
DCAR_013994 Daucus carota HOM05D000347 ORTHO05D001997 1.5e-06 58.2 175 20.0
BcaB05g22415 Brassica carinata HOM05D000347 ORTHO05D001997 2.6e-06 57.4 158 20.9
LjContig00016g0007772 Lotus japonicus HOM05D001978 ORTHO05D003036 3.3e-06 57.0 115 27.8
LjContig00095g0022524 Lotus japonicus HOM05D001978 ORTHO05D003036 3.3e-06 57.0 115 27.8
Pp3c2_28090 Physcomitrium patens HOM05D005151 ORTHO05D006322 4.4e-06 56.6 138 26.1
Pp3c2_28110 Physcomitrium patens HOM05D005151 ORTHO05D006322 4.4e-06 56.6 138 26.1
Migut.B00663 Erythranthe guttata HOM05D000347 ORTHO05D001997 5.7e-06 56.2 102 28.4


User provided reference genes

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