Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G0091 Punica granatum HOM05D003472 ORTHO05D004200 6.1e-82 307.4 150 100.0
PGR031G2218 Punica granatum HOM05D003472 ORTHO05D004200 2.9e-71 271.9 135 98.5
PGR031G0912 Punica granatum HOM05D003472 ORTHO05D004200 5.6e-67 257.7 135 95.6
RcHm_v2.0_Chr7g0186361 Rosa chinensis HOM05D003472 ORTHO05D004200 7.1e-46 187.6 135 65.9
FvH4_5g11460 Fragaria vesca HOM05D003472 ORTHO05D004200 1.0e-44 183.7 135 65.2
CiPaw.11G115400 Carya illinoinensis HOM05D003472 ORTHO05D004200 3.0e-44 182.2 135 65.9
QL02p028412 Quercus lobata HOM05D003472 ORTHO05D004200 5.1e-44 181.4 135 63.7
Cfa011959 Carpinus fangiana HOM05D003472 ORTHO05D004200 8.7e-44 180.6 135 65.2
Prupe.5G126300 Prunus persica HOM05D003472 ORTHO05D004200 3.3e-43 178.7 135 64.4
MD06G1113500 Malus domestica HOM05D003472 ORTHO05D004200 5.6e-43 177.9 135 63.0
arahy.Tifrunner.gnm1.ann1.5YP9G9 Arachis hypogaea HOM05D003472 ORTHO05D004200 2.8e-42 175.6 135 60.7
Phvul.002G301500 Phaseolus vulgaris HOM05D003472 ORTHO05D004200 3.6e-42 175.3 135 61.5
Glyma.05G219800 Glycine max HOM05D003472 ORTHO05D004200 6.2e-42 174.5 135 63.0
Lalb_Chr05g0223881 Lupinus albus HOM05D003472 ORTHO05D004200 6.2e-42 174.5 135 63.0
arahy.Tifrunner.gnm1.ann1.69PAS2 Arachis hypogaea HOM05D003472 ORTHO05D004200 1.1e-41 173.7 135 60.0
Haze_09126 Corylus avellana HOM05D003472 ORTHO05D004200 1.1e-41 173.7 135 63.7
Haze_09134 Corylus avellana HOM05D003472 ORTHO05D004200 1.1e-41 173.7 135 63.7
Rhsim07G0079700 Rhododendron simsii HOM05D003472 ORTHO05D004200 4.0e-41 171.8 140 57.9
Gohir.D11G019200 Gossypium hirsutum HOM05D003472 ORTHO05D004200 9.0e-41 170.6 135 60.0
CiPaw.12G079900 Carya illinoinensis HOM05D003472 ORTHO05D004200 1.2e-40 170.2 135 61.5
Gohir.A11G019500 Gossypium hirsutum HOM05D003472 ORTHO05D004200 1.2e-40 170.2 135 60.0
Medtr8g099985 Medicago truncatula HOM05D003472 ORTHO05D004200 1.2e-40 170.2 136 62.5
Potri.003G143900 Populus trichocarpa HOM05D003472 ORTHO05D004200 1.5e-40 169.9 135 60.0
VMungo0251G0959 Vigna mungo HOM05D003472 ORTHO05D004200 1.5e-40 169.9 135 59.3
Potri.001G087100 Populus trichocarpa HOM05D003472 ORTHO05D004200 2.6e-40 169.1 135 59.3
Sabra03G0104300 Salix brachista HOM05D003472 ORTHO05D004200 2.6e-40 169.1 135 59.3
Gorai.007G020500 Gossypium raimondii HOM05D003472 ORTHO05D004200 3.4e-40 168.7 135 59.3
Duzib205G0077 Durio zibethinus HOM05D003472 ORTHO05D004200 4.5e-40 168.3 135 58.5
TPR.G3439 Trifolium pratense HOM05D003472 ORTHO05D004200 5.8e-40 167.9 136 61.8
Ca_17451_v3 Cicer arietinum L. HOM05D003472 ORTHO05D004200 7.6e-40 167.5 135 60.7
MBI12_g15036_MAGBIO Magnolia biondii HOM05D003472 ORTHO05D004200 7.6e-40 167.5 135 59.3
Thecc.03G305100 Theobroma cacao HOM05D003472 ORTHO05D004200 7.6e-40 167.5 135 59.3
vmacro13868 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 7.6e-40 167.5 136 60.3
Dinv02502 Davidia involucrata HOM05D003472 ORTHO05D004200 9.9e-40 167.2 135 57.0
Dinv23367 Davidia involucrata HOM05D003472 ORTHO05D004200 9.9e-40 167.2 135 57.8
Thecc.03G304700 Theobroma cacao HOM05D003472 ORTHO05D004200 1.7e-39 166.4 135 58.5
BcaNung05698 Brassica carinata HOM05D003472 ORTHO05D004200 2.2e-39 166.0 135 60.7
Dinv06031 Davidia involucrata HOM05D003472 ORTHO05D004200 2.2e-39 166.0 135 57.8
Gohir.A02G096900 Gossypium hirsutum HOM05D003472 ORTHO05D004200 2.2e-39 166.0 135 59.3
Gorai.003G075200 Gossypium raimondii HOM05D003472 ORTHO05D004200 2.2e-39 166.0 135 59.3
Potri.003G144000 Populus trichocarpa HOM05D003472 ORTHO05D004200 2.2e-39 166.0 135 57.8
Actinidia22188 Actinidia chinensis HOM05D003472 ORTHO05D004200 2.9e-39 165.6 135 57.0
Sabra03G0104400 Salix brachista HOM05D003472 ORTHO05D004200 2.9e-39 165.6 135 60.0
Aqoxy5G04302 Aquilegia oxysepala HOM05D003472 ORTHO05D004200 3.8e-39 165.2 135 57.8
Cc08_g16500 Coffea canephora HOM05D003472 ORTHO05D004200 3.8e-39 165.2 135 56.3
Hma1.2p1_1835F.1_g304660 Hydrangea macrophylla HOM05D003472 ORTHO05D004200 3.8e-39 165.2 135 57.0
Sabra01G0063300 Salix brachista HOM05D003472 ORTHO05D004200 3.8e-39 165.2 135 58.5
BcaNung06470 Brassica carinata HOM05D003472 ORTHO05D004200 4.9e-39 164.9 135 59.3
A03p54940 Brassica napus HOM05D003472 ORTHO05D004200 4.9e-39 164.9 135 60.0
C07p53330 Brassica napus HOM05D003472 ORTHO05D004200 4.9e-39 164.9 135 59.3
BolC7t45827H Brassica oleracea HOM05D003472 ORTHO05D004200 4.9e-39 164.9 135 59.3
BraA03t14559Z Brassica rapa HOM05D003472 ORTHO05D004200 4.9e-39 164.9 135 60.0
COL.COLO4_10760 Corchorus olitorius HOM05D003472 ORTHO05D004200 4.9e-39 164.9 135 57.8
BcaNung01109 Brassica carinata HOM05D003472 ORTHO05D004200 6.4e-39 164.5 135 58.5
GSVIVG01019610001 Vitis vinifera HOM05D003472 ORTHO05D004200 6.4e-39 164.5 136 61.8
CANSAT21G1016 Cannabis sativa HOM05D003472 ORTHO05D004200 8.4e-39 164.1 135 58.5
TAR629G3421 Trochodendron aralioides HOM05D003472 ORTHO05D004200 8.4e-39 164.1 135 57.8
Manes.02G005400 Manihot esculenta HOM05D003472 ORTHO05D004200 1.1e-38 163.7 135 57.8
Oeu009993.1 Olea europaea HOM05D003472 ORTHO05D004200 1.4e-38 163.3 135 58.5
QL02p028420 Quercus lobata HOM05D003472 ORTHO05D004200 1.4e-38 163.3 135 58.5
BcaC09g50919 Brassica carinata HOM05D003472 ORTHO05D004200 1.9e-38 162.9 135 58.5
A01p15310 Brassica napus HOM05D003472 ORTHO05D004200 1.9e-38 162.9 135 58.5
C01p19260 Brassica napus HOM05D003472 ORTHO05D004200 1.9e-38 162.9 135 58.5
BraA01t01475Z Brassica rapa HOM05D003472 ORTHO05D004200 1.9e-38 162.9 135 58.5
Sp7g22010 Schrenkiella parvula HOM05D003472 ORTHO05D004200 1.9e-38 162.9 135 59.3
Nn1g00321 Nelumbo nucifera HOM05D003472 ORTHO05D004200 4.2e-38 161.8 135 58.5
BolC1t01851H Brassica oleracea HOM05D003472 ORTHO05D004200 7.1e-38 161.0 135 57.8
Ciclev10023271m.g Citrus clementina HOM05D003472 ORTHO05D004200 7.1e-38 161.0 135 57.8
Thhalv10024684m.g Eutrema salsugineum HOM05D003472 ORTHO05D004200 7.1e-38 161.0 135 58.5
PGR042G1639 Punica granatum HOM05D003472 ORTHO05D004200 7.1e-38 161.0 135 57.8
CDE04G3265 Ceratophyllum demersum HOM05D003472 ORTHO05D004200 9.3e-38 160.6 135 51.1
ClCG01G001880 Citrullus lanatus HOM05D003472 ORTHO05D004200 1.2e-37 160.2 135 58.5
Eucgr.E01027 Eucalyptus grandis HOM05D003472 ORTHO05D004200 1.2e-37 160.2 135 54.1
vmacro09228 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 1.2e-37 160.2 135 57.0
Oeu009994.1 Olea europaea HOM05D003472 ORTHO05D004200 1.6e-37 159.8 136 58.8
CSS0029461 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 2.1e-37 159.5 135 55.6
Cpa.g.sc15.13 Carica papaya HOM05D003472 ORTHO05D004200 2.1e-37 159.5 136 57.4
CsaV3_5G002020 Cucumis sativus L. HOM05D003472 ORTHO05D004200 2.1e-37 159.5 135 57.8
vmacro11524 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 2.1e-37 159.5 135 55.6
Carub.0007s1705 Capsella rubella HOM05D003472 ORTHO05D004200 3.5e-37 158.7 135 57.0
CARHR231440 Cardamine hirsuta HOM05D003472 ORTHO05D004200 3.5e-37 158.7 135 57.8
Manes.01G053600 Manihot esculenta HOM05D003472 ORTHO05D004200 3.5e-37 158.7 135 58.5
Aqoxy5G04304 Aquilegia oxysepala HOM05D003472 ORTHO05D004200 4.6e-37 158.3 135 55.6
AT4G24040 Arabidopsis thaliana HOM05D003472 ORTHO05D004200 7.9e-37 157.5 135 57.8
Sed0019208 Sechium edule HOM05D003472 ORTHO05D004200 7.9e-37 157.5 135 57.0
MELO3C005751.2 Cucumis melo HOM05D003472 ORTHO05D004200 1.0e-36 157.1 135 57.0
PGR042G3552 Punica granatum HOM05D003472 ORTHO05D004200 1.0e-36 157.1 135 55.6
DCAR_010023 Daucus carota HOM05D003472 ORTHO05D004200 1.3e-36 156.8 135 54.8
Migut.I01165 Erythranthe guttata HOM05D003472 ORTHO05D004200 1.3e-36 156.8 135 57.8
Rhsim08G0015900 Rhododendron simsii HOM05D003472 ORTHO05D004200 1.3e-36 156.8 135 54.8
AL7G29240 Arabidopsis lyrata HOM05D003472 ORTHO05D004200 1.8e-36 156.4 135 57.0
Nitab4.5_0002439g0080 Nicotiana tabacum HOM05D003472 ORTHO05D004200 1.8e-36 156.4 136 55.1
CSS0044761 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 2.3e-36 156.0 135 55.6
PSO170G3423 Papaver somniferum HOM05D003472 ORTHO05D004200 2.3e-36 156.0 135 57.8
CDE07G1940 Ceratophyllum demersum HOM05D003472 ORTHO05D004200 5.1e-36 154.8 135 50.4
ECA246G2504 Erigeron canadensis HOM05D003472 ORTHO05D004200 6.7e-36 154.5 135 53.3
HanXRQChr06g0166301 Helianthus annuus HOM05D003472 ORTHO05D004200 8.7e-36 154.1 135 51.9
CSS0008297 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 1.1e-35 153.7 135 54.1
Ciclev10000621m.g Citrus clementina HOM05D003472 ORTHO05D004200 1.1e-35 153.7 135 54.8
CANSAT21G0971 Cannabis sativa HOM05D003472 ORTHO05D004200 2.5e-35 152.5 140 55.0
SalBow6G0547 Salvia bowleyana HOM05D003472 ORTHO05D004200 2.5e-35 152.5 135 59.3
vmacro22586 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 2.5e-35 152.5 163 49.1
Gohir.D03G086900 Gossypium hirsutum HOM05D003472 ORTHO05D004200 4.3e-35 151.8 135 57.8
THA.LOC104806447 Tarenaya hassleriana HOM05D003472 ORTHO05D004200 7.4e-35 151.0 135 54.8
Lj8C203G7 Lonicera japonica HOM05D003472 ORTHO05D004200 9.6e-35 150.6 136 54.4
TWI60G0449 Tripterygium wilfordii HOM05D003472 ORTHO05D004200 1.6e-34 149.8 135 53.3
unitig_1.g29358 Utricularia gibba HOM05D003472 ORTHO05D004200 2.1e-34 149.4 153 51.6
CAN.G567.65 Capsicum annuum HOM05D003472 ORTHO05D004200 3.7e-34 148.7 134 53.7
TWI60G0599 Tripterygium wilfordii HOM05D003472 ORTHO05D004200 3.7e-34 148.7 135 53.3
MSTRG.24856 Avicennia marina HOM05D003472 ORTHO05D004200 4.8e-34 148.3 135 55.6
Ciclev10033306m.g Citrus clementina HOM05D003472 ORTHO05D004200 4.8e-34 148.3 141 52.5
MSTRG.24857 Avicennia marina HOM05D003472 ORTHO05D004200 6.2e-34 147.9 135 56.3
Hund11368 Selenicereus undatus HOM05D003472 ORTHO05D004200 1.1e-33 147.1 135 52.6
SGA_v2.0_scaffold198G41058 Striga asiatica HOM05D003472 ORTHO05D004200 1.1e-33 147.1 135 53.3
Nitab4.5_0006889g0020 Nicotiana tabacum HOM05D003472 ORTHO05D004200 4.0e-33 145.2 134 52.2
Ah.12g052970 Amaranthus hybridus HOM05D003472 ORTHO05D007906 5.3e-33 144.8 135 53.3
Sopen08g031090 Solanum pennellii HOM05D003472 ORTHO05D004200 9.0e-33 144.1 135 52.6
CAN.G567.64 Capsicum annuum HOM05D003472 ORTHO05D004200 1.2e-32 143.7 134 53.0
Lsat_1_v5_gn_3_12621 Lactuca sativa HOM05D003472 ORTHO05D004200 1.2e-32 143.7 136 52.9
Sc01g0010480 Simmondsia chinensis HOM05D003472 ORTHO05D004200 1.2e-32 143.7 135 52.6
Solyc08g082860.4 Solanum lycopersicum HOM05D003472 ORTHO05D004200 1.5e-32 143.3 135 52.6
PGSC0003DMG400012252 Solanum tuberosum HOM05D003472 ORTHO05D004200 1.5e-32 143.3 135 52.6
EL10Ac5g12473 Beta vulgaris HOM05D003472 ORTHO05D004200 2.6e-32 142.5 135 52.6
SEGI_01865 Sequoiadendron giganteum HOM05D003472 ORTHO05D004200 2.6e-32 142.5 142 50.7
SEGI_04080 Sequoiadendron giganteum HOM05D003472 ORTHO05D004200 2.6e-32 142.5 144 49.3
BolC9t56133H Brassica oleracea HOM05D003472 ORTHO05D004200 3.4e-32 142.1 136 53.7
BcaC04g21340 Brassica carinata HOM05D003472 ORTHO05D004200 4.5e-32 141.7 135 52.6
C09p32980 Brassica napus HOM05D003472 ORTHO05D004200 4.5e-32 141.7 135 52.6
Os10g0521000 Oryza sativa ssp. japonica HOM05D003472 ORTHO05D004200 7.6e-32 141.0 142 50.7
SHI06939 Sapria himalayana HOM05D003472 ORTHO05D004200 7.6e-32 141.0 135 54.1
Nitab4.5_0002439g0130 Nicotiana tabacum HOM05D003472 ORTHO05D004200 2.9e-31 139.0 129 55.0
AUR62007025 Chenopodium quinoa HOM05D003472 ORTHO05D004200 3.8e-31 138.7 135 50.4
ATR0757G010 Amborella trichopoda HOM05D003472 ORTHO05D004200 1.4e-30 136.7 135 51.9
Thecc.03G304400 Theobroma cacao HOM05D003472 ORTHO05D004200 1.4e-30 136.7 129 51.9
Psat7g022760 Pisum sativum HOM05D003472 ORTHO05D004200 4.2e-30 135.2 103 63.1
Pp3c24_9748 Physcomitrium patens HOM05D003472 ORTHO05D004200 6.0e-29 131.3 138 48.6
Pp3c24_9750 Physcomitrium patens HOM05D003472 ORTHO05D004200 6.0e-29 131.3 138 48.6
Lj4g0019041 Lotus japonicus HOM05D003472 ORTHO05D004200 1.3e-28 130.2 102 58.8
HPP92_014452 Vanilla planifolia HOM05D003472 ORTHO05D004200 3.0e-28 129.0 140 46.4
FAN04G2329 Fragaria x ananassa HOM05D003472 ORTHO05D004200 7.4e-27 124.4 92 63.0
Pp3c23_11240 Physcomitrium patens HOM05D003472 ORTHO05D004200 1.3e-26 123.6 138 44.9
CSS0021198 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 3.7e-26 122.1 150 46.0
SMO165G0115 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 3.1e-25 119.0 140 45.0
SMO272G0034 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 1.5e-24 116.7 140 44.3
Rhsim08G0020400 Rhododendron simsii HOM05D003472 ORTHO05D004200 2.0e-24 116.3 135 47.4
Zm00001eb021270 Zea mays HOM05D003472 ORTHO05D004200 3.4e-24 115.5 104 50.0
SMO165G0094 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 4.5e-24 115.2 140 43.6
Nitab4.5_0006889g0030 Nicotiana tabacum HOM05D003472 ORTHO05D004200 5.8e-24 114.8 129 46.5
AagrBONN_evm.TU.Sc2ySwM_117.3367 Anthoceros agrestis HOM05D003472 ORTHO05D004200 2.5e-22 109.4 135 44.4
SMO119G0122 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 2.5e-22 109.4 138 42.0
CiPaw.11G115500 Carya illinoinensis HOM05D003472 ORTHO05D004200 7.1e-22 107.8 150 44.7
Pp3c16_7830 Physcomitrium patens HOM05D003472 ORTHO05D004200 7.1e-22 107.8 140 37.1
FAN13G1911 Fragaria x ananassa HOM05D003472 ORTHO05D004200 7.9e-21 104.4 73 65.8
unitig_747.g22055 Utricularia gibba HOM05D003472 ORTHO05D004200 1.3e-20 103.6 136 47.1
FAN08G2572 Fragaria x ananassa HOM05D003472 ORTHO05D004200 2.3e-20 102.8 67 67.2
ClCG01G001870 Citrullus lanatus HOM05D003472 ORTHO05D004200 5.1e-20 101.7 120 46.7
FAN18G4027 Fragaria x ananassa HOM05D003472 ORTHO05D004200 6.7e-20 101.3 67 67.2
Mapoly0055s0045 Marchantia polymorpha HOM05D003472 ORTHO05D004200 6.7e-20 101.3 136 40.4
Pp3c5_16470 Physcomitrium patens HOM05D003472 ORTHO05D004200 1.5e-19 100.1 143 38.5
Mapoly0014s0133 Marchantia polymorpha HOM05D003472 ORTHO05D004200 4.3e-19 98.6 145 37.9
Peaxi162Scf00074g00435 Petunia axillaris HOM05D003472 ORTHO05D004200 1.6e-18 96.7 98 49.0
Thecc.03G304900 Theobroma cacao HOM05D003472 ORTHO05D004200 6.3e-18 94.7 75 62.7
SEGI_13496 Sequoiadendron giganteum HOM05D003472 ORTHO05D004200 6.5e-15 84.7 132 38.6
CBR_g24063 Chara braunii HOM05D003472 ORTHO05D004200 6.7e-12 74.7 198 27.3
Rhsim02G0248900 Rhododendron simsii HOM05D003472 ORTHO05D004200 6.7e-12 74.7 62 58.1
PRCOL_00003576 Prasinoderma coloniale HOM05D003472 ORTHO05D004200 4.3e-11 72.0 139 32.4
Cre03.g195600 Chlamydomonas reinhardtii HOM05D003472 ORTHO05D004200 1.2e-08 63.9 167 29.3
arahy.Tifrunner.gnm1.ann1.TJXZ67 Arachis hypogaea HOM05D003472 ORTHO05D004200 5.0e-07 58.5 47 55.3


User provided reference genes

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