Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G2481 Punica granatum HOM05D004227 ORTHO05D005027 1.7e-87 325.9 157 100.0
PGR004G2111 Punica granatum HOM05D004227 ORTHO05D005027 3.8e-82 308.1 157 95.5
Eucgr.D01223 Eucalyptus grandis HOM05D004227 ORTHO05D005027 1.9e-78 295.8 149 94.0
CsaV3_3G007250 Cucumis sativus L. HOM05D004227 ORTHO05D005027 7.4e-78 293.9 147 95.9
arahy.Tifrunner.gnm1.ann1.CPA9TZ Arachis hypogaea HOM05D004227 ORTHO05D005027 1.6e-77 292.7 149 94.0
arahy.Tifrunner.gnm1.ann1.RC63K2 Arachis hypogaea HOM05D004227 ORTHO05D005027 1.6e-77 292.7 149 94.0
Psat5g001800 Pisum sativum HOM05D004227 ORTHO05D005027 1.6e-77 292.7 149 94.0
Medtr3g118110 Medicago truncatula HOM05D004227 ORTHO05D005027 2.1e-77 292.4 149 94.0
TPR.G38529 Trifolium pratense HOM05D004227 ORTHO05D005027 2.1e-77 292.4 149 94.0
CANSAT25G0195 Cannabis sativa HOM05D004227 ORTHO05D005027 2.8e-77 292.0 150 92.0
Hma1.2p1_1508F.1_g287710 Hydrangea macrophylla HOM05D004227 ORTHO05D005027 2.8e-77 292.0 148 94.6
Sed0011885 Sechium edule HOM05D004227 ORTHO05D005027 2.8e-77 292.0 147 94.6
SGA_v2.0_scaffold44G16581 Striga asiatica HOM05D004227 ORTHO05D005027 2.8e-77 292.0 148 92.6
VMungo0331G1366 Vigna mungo HOM05D004227 ORTHO05D005027 2.8e-77 292.0 149 93.3
MD07G1109700 Malus domestica HOM05D004227 ORTHO05D005027 3.7e-77 291.6 150 92.7
CSS0010737 Camellia sinensis var. sinensis HOM05D004227 ORTHO05D005027 4.8e-77 291.2 152 91.4
Glyma.07G115700 Glycine max HOM05D004227 ORTHO05D005027 4.8e-77 291.2 149 93.3
Nitab4.5_0002153g0060 Nicotiana tabacum HOM05D004227 ORTHO05D005027 4.8e-77 291.2 147 93.2
PSO063G7112 Papaver somniferum HOM05D004227 ORTHO05D005027 4.8e-77 291.2 148 93.9
PSO782G5116 Papaver somniferum HOM05D004227 ORTHO05D005027 4.8e-77 291.2 148 93.9
Actinidia13618 Actinidia chinensis HOM05D004227 ORTHO05D005027 6.2e-77 290.8 152 90.8
Actinidia31661 Actinidia chinensis HOM05D004227 ORTHO05D005027 6.2e-77 290.8 149 91.9
Ciclev10022690m.g Citrus clementina HOM05D004227 ORTHO05D005027 6.2e-77 290.8 148 93.9
Lj3g0012613 Lotus japonicus HOM05D004227 ORTHO05D005027 6.2e-77 290.8 149 92.6
Phvul.010G046900 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 6.2e-77 290.8 149 92.6
HPP92_014889 Vanilla planifolia HOM05D004227 ORTHO05D005027 6.2e-77 290.8 146 93.8
HPP92_014893 Vanilla planifolia HOM05D004227 ORTHO05D005027 6.2e-77 290.8 146 93.8
Ca_15636_v3 Cicer arietinum L. HOM05D004227 ORTHO05D005027 8.1e-77 290.4 149 93.3
Duzib138G0704 Durio zibethinus HOM05D004227 ORTHO05D005027 8.1e-77 290.4 149 92.6
Gohir.A08G057900 Gossypium hirsutum HOM05D004227 ORTHO05D005027 8.1e-77 290.4 149 92.6
Gohir.D08G067200 Gossypium hirsutum HOM05D004227 ORTHO05D005027 8.1e-77 290.4 149 92.6
Gorai.004G069800 Gossypium raimondii HOM05D004227 ORTHO05D005027 8.1e-77 290.4 149 92.6
Prupe.2G133100 Prunus persica HOM05D004227 ORTHO05D005027 8.1e-77 290.4 150 92.0
Thecc.01G396100 Theobroma cacao HOM05D004227 ORTHO05D005027 8.1e-77 290.4 149 92.6
TWI23G1276 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 8.1e-77 290.4 149 92.6
TWI59G0764 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 8.1e-77 290.4 149 93.3
Duzib133G0083 Durio zibethinus HOM05D004227 ORTHO05D005027 1.1e-76 290.0 149 92.6
FAN01G2506 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.4e-76 289.7 150 90.7
FAN03G2167 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.4e-76 289.7 150 90.7
FAN06G3355 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.4e-76 289.7 150 90.7
FAN10G0507 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.4e-76 289.7 150 90.7
FAN10G0749 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.4e-76 289.7 150 90.7
Gohir.D11G079800 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.4e-76 289.7 149 91.9
Lj3g0003497 Lotus japonicus HOM05D004227 ORTHO05D005027 1.4e-76 289.7 149 92.6
RcHm_v2.0_Chr1g0348061 Rosa chinensis HOM05D004227 ORTHO05D005027 1.4e-76 289.7 150 90.7
Migut.F00534 Erythranthe guttata HOM05D004227 ORTHO05D005027 1.8e-76 289.3 148 91.9
Gohir.A11G075100 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.8e-76 289.3 149 91.9
Gorai.007G085400 Gossypium raimondii HOM05D004227 ORTHO05D005027 1.8e-76 289.3 149 91.9
Glyma.03G109200 Glycine max HOM05D004227 ORTHO05D005027 2.4e-76 288.9 149 91.9
Nn1g00815 Nelumbo nucifera HOM05D004227 ORTHO05D005027 2.4e-76 288.9 148 92.6
Rhsim03G0159900 Rhododendron simsii HOM05D004227 ORTHO05D005027 2.4e-76 288.9 151 92.7
unitig_46.g18760 Utricularia gibba HOM05D004227 ORTHO05D005027 2.4e-76 288.9 151 91.4
Dinv43609 Davidia involucrata HOM05D004227 ORTHO05D005027 3.1e-76 288.5 148 92.6
FAN06G2246 Fragaria x ananassa HOM05D004227 ORTHO05D005027 3.1e-76 288.5 150 90.0
Manes.05G055700 Manihot esculenta HOM05D004227 ORTHO05D005027 3.1e-76 288.5 147 93.9
Hund24961 Selenicereus undatus HOM05D004227 ORTHO05D005027 3.1e-76 288.5 150 92.7
Cpa.g.sc22.26 Carica papaya HOM05D004227 ORTHO05D005027 4.0e-76 288.1 149 90.6
Solyc03g093680.4 Solanum lycopersicum HOM05D004227 ORTHO05D005027 4.0e-76 288.1 147 91.8
Sopen03g024580 Solanum pennellii HOM05D004227 ORTHO05D005027 4.0e-76 288.1 147 91.8
Potri.014G049700 Populus trichocarpa HOM05D004227 ORTHO05D005027 5.3e-76 287.7 149 91.3
Nitab4.5_0003321g0070 Nicotiana tabacum HOM05D004227 ORTHO05D005027 9.0e-76 287.0 148 90.5
TAR636G2330 Trochodendron aralioides HOM05D004227 ORTHO05D005027 9.0e-76 287.0 148 91.9
CDE06G1820 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 1.5e-75 286.2 147 92.5
CDE06G1835 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 1.5e-75 286.2 147 92.5
Nitab4.5_0002359g0040 Nicotiana tabacum HOM05D004227 ORTHO05D005027 1.5e-75 286.2 148 90.5
Dinv44054 Davidia involucrata HOM05D004227 ORTHO05D005027 2.0e-75 285.8 148 91.2
ECA232G0872 Erigeron canadensis HOM05D004227 ORTHO05D005027 2.0e-75 285.8 157 86.6
MSTRG.27225 Avicennia marina HOM05D004227 ORTHO05D005027 2.6e-75 285.4 151 90.1
EL10Ac6g14165 Beta vulgaris HOM05D004227 ORTHO05D005027 2.6e-75 285.4 150 91.3
HanXRQChr09g0252831 Helianthus annuus HOM05D004227 ORTHO05D005027 3.4e-75 285.0 144 93.1
Lsat_1_v5_gn_0_10121 Lactuca sativa HOM05D004227 ORTHO05D005027 3.4e-75 285.0 151 89.4
Lalb_Chr06g0171081 Lupinus albus HOM05D004227 ORTHO05D005027 3.4e-75 285.0 150 90.7
Potri.002G138500 Populus trichocarpa HOM05D004227 ORTHO05D005027 3.4e-75 285.0 149 90.6
AUR62014174 Chenopodium quinoa HOM05D004227 ORTHO05D005027 4.5e-75 284.6 149 91.9
Glyma.15G097500 Glycine max HOM05D004227 ORTHO05D005027 4.5e-75 284.6 149 90.6
COL.COLO4_14773 Corchorus olitorius HOM05D004227 ORTHO05D005027 5.8e-75 284.3 149 90.6
Phvul.006G161800 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 5.8e-75 284.3 149 90.6
Ah.01g017970 Amaranthus hybridus HOM05D004227 ORTHO05D005027 7.6e-75 283.9 149 90.6
COL.COLO4_12397 Corchorus olitorius HOM05D004227 ORTHO05D005027 7.6e-75 283.9 149 91.3
SEGI_06195 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 7.6e-75 283.9 148 91.9
SEGI_27062 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 7.6e-75 283.9 148 91.9
THA.LOC104816996 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 9.9e-75 283.5 145 92.4
CAN.G460.2 Capsicum annuum HOM05D004227 ORTHO05D005027 1.3e-74 283.1 147 90.5
HanXRQChr15g0493591 Helianthus annuus HOM05D004227 ORTHO05D005027 1.3e-74 283.1 144 92.4
THA.LOC104801496 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 4.9e-74 281.2 149 89.3
Pp3c1_16440 Physcomitrium patens HOM05D004227 ORTHO05D005027 6.4e-74 280.8 148 89.9
Pp3c2_21720 Physcomitrium patens HOM05D004227 ORTHO05D005027 6.4e-74 280.8 148 89.9
AagrBONN_evm.TU.Sc2ySwM_344.2698 Anthoceros agrestis HOM05D004227 ORTHO05D005027 1.1e-73 280.0 144 92.4
Mapoly0032s0045 Marchantia polymorpha HOM05D004227 ORTHO05D005027 1.4e-73 279.6 148 90.5
Aqoxy3G01907 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 2.4e-73 278.9 148 90.5
QL04p029953 Quercus lobata HOM05D004227 ORTHO05D005027 4.2e-73 278.1 149 88.6
QL07p006029 Quercus lobata HOM05D004227 ORTHO05D005027 4.2e-73 278.1 149 88.6
Aqoxy91s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 5.5e-73 277.7 148 90.5
BcaC07g42337 Brassica carinata HOM05D004227 ORTHO05D005027 5.5e-73 277.7 148 89.2
Os12g0287200 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 1.2e-72 276.6 151 86.8
BcaC07g42439 Brassica carinata HOM05D004227 ORTHO05D005027 1.6e-72 276.2 148 88.5
A10p00100 Brassica napus HOM05D004227 ORTHO05D005027 1.6e-72 276.2 148 88.5
BolC8t52927H Brassica oleracea HOM05D004227 ORTHO05D005027 1.6e-72 276.2 148 88.5
BraA10t42288Z Brassica rapa HOM05D004227 ORTHO05D005027 1.6e-72 276.2 148 88.5
Zm00001eb174310 Zea mays HOM05D004227 ORTHO05D005027 1.6e-72 276.2 151 87.4
BcaB03g13634 Brassica carinata HOM05D004227 ORTHO05D005027 1.0e-71 273.5 148 87.8
C05p00070 Brassica napus HOM05D004227 ORTHO05D005027 1.0e-71 273.5 148 87.8
Carub.0001s0001 Capsella rubella HOM05D004227 ORTHO05D005027 1.0e-71 273.5 150 88.0
Cfa009863 Carpinus fangiana HOM05D004227 ORTHO05D005027 1.0e-71 273.5 152 86.2
AL1G10090 Arabidopsis lyrata HOM05D004227 ORTHO05D005027 1.3e-71 273.1 148 86.5
Thhalv10009013m.g Eutrema salsugineum HOM05D004227 ORTHO05D005027 2.3e-71 272.3 148 85.8
CARHR000190 Cardamine hirsuta HOM05D004227 ORTHO05D005027 3.0e-71 271.9 149 86.6
AT1G02140 Arabidopsis thaliana HOM05D004227 ORTHO05D005027 6.7e-71 270.8 148 85.8
Os08g0107900 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 6.7e-71 270.8 151 85.4
CiPaw.14G019900 Carya illinoinensis HOM05D004227 ORTHO05D005027 8.7e-71 270.4 145 87.6
Rhsim13G0168500 Rhododendron simsii HOM05D004227 ORTHO05D005027 4.3e-70 268.1 149 88.6
BolC5t28794H Brassica oleracea HOM05D004227 ORTHO05D005027 1.6e-69 266.2 156 83.3
Lalb_Chr01g0012541 Lupinus albus HOM05D004227 ORTHO05D005027 6.2e-69 264.2 140 90.0
Zm00001eb260270 Zea mays HOM05D004227 ORTHO05D005027 1.1e-68 263.5 143 87.4
ClCG05G000140 Citrullus lanatus HOM05D004227 ORTHO05D005027 2.2e-66 255.8 127 95.3
MELO3C005946.2 Cucumis melo HOM05D004227 ORTHO05D005027 2.2e-66 255.8 127 95.3
Oeu030870.1 Olea europaea HOM05D004227 ORTHO05D005027 8.4e-66 253.8 130 90.0
FvH4_7g10360 Fragaria vesca HOM05D004227 ORTHO05D005027 1.1e-65 253.4 144 82.6
Nitab4.5_0004457g0020 Nicotiana tabacum HOM05D004227 ORTHO05D005027 1.1e-65 253.4 129 91.5
Sp1g00120 Schrenkiella parvula HOM05D004227 ORTHO05D005027 1.4e-65 253.1 135 87.4
PGSC0003DMG400021002 Solanum tuberosum HOM05D004227 ORTHO05D005027 1.9e-65 252.7 130 90.0
Atru.chr2.217 Acer truncatum HOM05D004227 ORTHO05D005027 4.2e-65 251.5 132 91.7
Lj7A548G44 Lonicera japonica HOM05D004227 ORTHO05D005027 7.1e-65 250.8 127 92.1
MBI19_g27175_MAGBIO Magnolia biondii HOM05D004227 ORTHO05D005027 9.3e-65 250.4 130 90.0
vmacro05443 Vaccinium macrocarpon HOM05D004227 ORTHO05D005027 9.3e-65 250.4 124 95.2
Lj9A555T36 Lonicera japonica HOM05D004227 ORTHO05D005027 1.2e-64 250.0 137 86.9
TAR629G1537 Trochodendron aralioides HOM05D004227 ORTHO05D005027 1.6e-64 249.6 128 90.6
Peaxi162Scf01305g00032 Petunia axillaris HOM05D004227 ORTHO05D005027 2.1e-64 249.2 127 90.6
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 2.7e-64 248.8 130 90.8
Oeu046442.1 Olea europaea HOM05D004227 ORTHO05D005027 4.6e-64 248.1 131 88.5
Aa31LG1G11540 Aethionema arabicum HOM05D004227 ORTHO05D005027 6.0e-64 247.7 128 90.6
AUR62039531 Chenopodium quinoa HOM05D004227 ORTHO05D005027 7.9e-64 247.3 140 85.0
unitig_37.g12485 Utricularia gibba HOM05D004227 ORTHO05D005027 1.3e-63 246.5 129 90.7
SalBow3G0312 Salvia bowleyana HOM05D004227 ORTHO05D005027 1.8e-63 246.1 133 88.7
SalBow3G4020 Salvia bowleyana HOM05D004227 ORTHO05D005027 2.3e-63 245.7 131 89.3
A09p69360 Brassica napus HOM05D004227 ORTHO05D005027 3.0e-63 245.4 150 78.7
BraA09t42281Z Brassica rapa HOM05D004227 ORTHO05D005027 3.0e-63 245.4 150 78.7
Sabra02G0107500 Salix brachista HOM05D004227 ORTHO05D005027 3.9e-63 245.0 130 87.7
Peaxi162Scf00304g01023 Petunia axillaris HOM05D004227 ORTHO05D005027 4.3e-62 241.5 148 81.8
Aqoxy109s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 5.7e-62 241.1 143 81.8
SGA_v2.0_scaffold60G20835 Striga asiatica HOM05D004227 ORTHO05D005027 5.7e-62 241.1 143 81.8
Aqoxy3G01910 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 7.4e-62 240.7 128 89.1
MCO04G284 Micromonas commoda HOM05D004227 ORTHO05D005027 3.7e-61 238.4 145 75.2
Cre09.g392692 Chlamydomonas reinhardtii HOM05D004227 ORTHO05D005027 4.8e-61 238.0 144 73.6
Medtr3g109260 Medicago truncatula HOM05D004227 ORTHO05D005027 2.9e-58 228.8 148 73.0
ATR0090G010 Amborella trichopoda HOM05D004227 ORTHO05D005027 4.6e-56 221.5 154 72.7
Haze_23235 Corylus avellana HOM05D004227 ORTHO05D005027 2.4e-52 209.1 188 59.0
Pp3c1_16390 Physcomitrium patens HOM05D004227 ORTHO05D005027 2.6e-51 205.7 144 72.2
CiPaw.13G025400 Carya illinoinensis HOM05D004227 ORTHO05D005027 5.9e-51 204.5 116 83.6
GSVIVG01013876001 Vitis vinifera HOM05D004227 ORTHO05D005027 6.5e-50 201.1 103 94.2
SHI13620 Sapria himalayana HOM05D004227 ORTHO05D005027 2.5e-49 199.1 123 74.8
Lsat_1_v5_gn_2_127120 Lactuca sativa HOM05D004227 ORTHO05D005027 9.4e-49 197.2 103 90.3
Cc02_g04830 Coffea canephora HOM05D004227 ORTHO05D005027 6.1e-48 194.5 103 89.3
Haze_27249 Corylus avellana HOM05D004227 ORTHO05D005027 1.5e-46 189.9 116 75.0
CDE06G1723 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 5.0e-42 174.9 87 92.0
C08p54180 Brassica napus HOM05D004227 ORTHO05D005027 1.9e-41 172.9 115 79.1
VMungo0540G1169 Vigna mungo HOM05D004227 ORTHO05D005027 1.3e-37 160.2 84 83.3
CBR_g19771 Chara braunii HOM05D004227 ORTHO05D005027 2.8e-37 159.1 81 95.1
Atru.chr5.117 Acer truncatum HOM05D004227 ORTHO05D005027 2.4e-36 156.0 79 88.6
HPP92_020677 Vanilla planifolia HOM05D004227 ORTHO05D005027 1.3e-34 150.2 142 58.5
Rhsim13G0168700 Rhododendron simsii HOM05D004227 ORTHO05D005027 1.1e-33 147.1 73 98.6
MD00G1129300 Malus domestica HOM05D004227 ORTHO05D005027 2.0e-30 136.3 72 83.3
Aqoxy3G01908 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.4e-28 130.2 71 88.7
Aqoxy91s002 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 5.3e-28 128.3 71 88.7
Aqoxy3G01911 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 2.7e-27 125.9 71 87.3
Actinidia01038 Actinidia chinensis HOM05D004227 ORTHO05D005027 3.6e-24 115.5 78 70.5
Sed0011381 Sechium edule HOM05D004227 ORTHO05D373379 1.6e-16 90.1 45 97.8
Aqoxy109s002 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 1.4e-15 87.0 46 91.3
Haze_23858 Corylus avellana HOM05D004227 ORTHO05D034883 3.1e-12 75.9 70 57.1


User provided reference genes

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