Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G2223 Punica granatum HOM05D002102 ORTHO05D008242 1.9e-145 519.2 272 100.0
GSVIVG01037088001 Vitis vinifera HOM05D002102 ORTHO05D008242 1.9e-81 306.6 205 78.0
TAR627G1208 Trochodendron aralioides HOM05D002102 ORTHO05D008242 9.4e-81 304.3 218 74.8
Nn7g38425 Nelumbo nucifera HOM05D002102 ORTHO05D008242 4.7e-80 302.0 216 73.6
Cpa.g.sc30.78 Carica papaya HOM05D002102 ORTHO05D008242 1.8e-79 300.1 249 66.3
Lj4g0016411 Lotus japonicus HOM05D002102 ORTHO05D008242 8.8e-79 297.7 211 72.0
Eucgr.E03887 Eucalyptus grandis HOM05D002102 ORTHO05D008242 3.4e-78 295.8 215 72.6
arahy.Tifrunner.gnm1.ann1.N8G6CJ Arachis hypogaea HOM05D002102 ORTHO05D008242 1.1e-76 290.8 218 70.6
arahy.Tifrunner.gnm1.ann1.1TYS6L Arachis hypogaea HOM05D002102 ORTHO05D008242 2.4e-76 289.7 217 70.5
CiPaw.09G140600 Carya illinoinensis HOM05D002102 ORTHO05D008242 1.6e-75 287.0 182 78.6
QL11p010809 Quercus lobata HOM05D002102 ORTHO05D008242 2.7e-75 286.2 221 69.2
CsaV3_6G053190 Cucumis sativus L. HOM05D002102 ORTHO05D008242 7.7e-75 284.6 220 68.2
Actinidia34700 Actinidia chinensis HOM05D002102 ORTHO05D008242 1.3e-74 283.9 211 69.7
CSS0016773 Camellia sinensis var. sinensis HOM05D002102 ORTHO05D008242 1.3e-74 283.9 215 68.4
Glyma.16G094300 Glycine max HOM05D002102 ORTHO05D008242 1.3e-74 283.9 219 69.4
Aqoxy1G01357 Aquilegia oxysepala HOM05D002102 ORTHO05D008242 3.8e-74 282.3 229 66.8
Gohir.D02G240400 Gossypium hirsutum HOM05D002102 ORTHO05D008242 5.0e-74 282.0 209 71.8
CANSAT35G0655 Cannabis sativa HOM05D002102 ORTHO05D008242 6.5e-74 281.6 222 67.6
Lalb_Chr21g0315091 Lupinus albus HOM05D002102 ORTHO05D008242 6.5e-74 281.6 242 61.6
Glyma.08G267700 Glycine max HOM05D002102 ORTHO05D008242 8.5e-74 281.2 220 67.7
TWI63G1577 Tripterygium wilfordii HOM05D002102 ORTHO05D008242 1.1e-73 280.8 233 66.1
MELO3C006996.2 Cucumis melo HOM05D002102 ORTHO05D008242 1.9e-73 280.0 237 63.3
Gohir.A03G218300 Gossypium hirsutum HOM05D002102 ORTHO05D008242 3.2e-73 279.3 209 71.3
Gorai.005G268700 Gossypium raimondii HOM05D002102 ORTHO05D008242 3.2e-73 279.3 224 67.4
Ciclev10016300m.g Citrus clementina HOM05D002102 ORTHO05D008242 4.2e-73 278.9 218 69.7
Thecc.02G001200 Theobroma cacao HOM05D002102 ORTHO05D008242 4.2e-73 278.9 248 64.5
HanXRQChr09g0257721 Helianthus annuus HOM05D002102 ORTHO05D008242 7.2e-73 278.1 176 80.1
Sed0010823 Sechium edule HOM05D002102 ORTHO05D008242 7.2e-73 278.1 211 69.2
Manes.03G073000 Manihot esculenta HOM05D002102 ORTHO05D008242 3.6e-72 275.8 216 66.7
PSO675G4370 Papaver somniferum HOM05D002102 ORTHO05D008242 8.0e-72 274.6 222 65.3
PSO170G6365 Papaver somniferum HOM05D002102 ORTHO05D008242 1.0e-71 274.2 222 65.3
Ca_22534_v3 Cicer arietinum L. HOM05D002102 ORTHO05D008242 6.8e-71 271.6 220 66.4
Lsat_1_v5_gn_8_106940 Lactuca sativa HOM05D002102 ORTHO05D008242 2.0e-70 270.0 182 73.6
vmacro11020 Vaccinium macrocarpon HOM05D002102 ORTHO05D008242 5.7e-70 268.5 311 51.8
PGSC0003DMG402011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 1.3e-69 267.3 216 64.8
Potri.001G074200 Populus trichocarpa HOM05D002102 ORTHO05D008242 1.7e-69 266.9 177 76.3
RcHm_v2.0_Chr5g0021821 Rosa chinensis HOM05D002102 ORTHO05D008242 6.3e-69 265.0 179 75.4
Cc09_g04620 Coffea canephora HOM05D002102 ORTHO05D008242 8.3e-69 264.6 246 58.5
Rhsim02G0171500 Rhododendron simsii HOM05D002102 ORTHO05D008242 8.3e-69 264.6 248 60.1
FvH4_3g13341 Fragaria vesca HOM05D002102 ORTHO05D008242 1.4e-68 263.8 179 74.9
Peaxi162Scf00313g00048 Petunia axillaris HOM05D002102 ORTHO05D008242 1.8e-68 263.5 236 61.0
Haze_05188 Corylus avellana HOM05D002102 ORTHO05D008242 3.1e-68 262.7 231 63.2
Nitab4.5_0002246g0020 Nicotiana tabacum HOM05D002102 ORTHO05D008242 3.1e-68 262.7 179 74.9
Oeu023527.1 Olea europaea HOM05D002102 ORTHO05D008242 3.1e-68 262.7 200 70.5
Sabra01G0052500 Salix brachista HOM05D002102 ORTHO05D008242 4.1e-68 262.3 177 74.6
EL10Ac4g09967 Beta vulgaris HOM05D002102 ORTHO05D008242 5.4e-68 261.9 204 67.2
TPR.G19825 Trifolium pratense HOM05D002102 ORTHO05D008242 7.0e-68 261.5 225 65.3
Phvul.003G275400 Phaseolus vulgaris HOM05D002102 ORTHO05D008242 5.9e-67 258.5 207 66.7
Prupe.4G120800 Prunus persica HOM05D002102 ORTHO05D008242 5.9e-67 258.5 180 74.4
MD10G1224400 Malus domestica HOM05D002102 ORTHO05D008242 7.7e-67 258.1 186 73.1
Medtr8g070680 Medicago truncatula HOM05D002102 ORTHO05D008242 1.7e-66 256.9 226 62.8
Ah.06g191610 Amaranthus hybridus HOM05D002851 ORTHO05D003084 2.9e-66 256.1 266 56.8
Solyc10g005180.3 Solanum lycopersicum HOM05D002102 ORTHO05D008242 8.6e-66 254.6 245 56.7
Os01g0798500 Oryza sativa ssp. japonica HOM05D002102 ORTHO05D008242 1.1e-65 254.2 192 67.2
ClCG01G025950 Citrullus lanatus HOM05D002102 ORTHO05D008242 1.6e-64 250.4 205 65.9
Zm00001eb150810 Zea mays HOM05D002102 ORTHO05D008242 4.7e-64 248.8 255 55.3
Thhalv10000983m.g Eutrema salsugineum HOM05D002102 ORTHO05D008242 8.0e-64 248.1 179 69.8
FAN25G3128 Fragaria x ananassa HOM05D002102 ORTHO05D008242 1.8e-63 246.9 168 73.8
FAN16G2960 Fragaria x ananassa HOM05D002102 ORTHO05D008242 3.0e-63 246.1 168 73.2
FAN11G2372 Fragaria x ananassa HOM05D002102 ORTHO05D008242 4.0e-63 245.7 168 73.2
CARHR178230 Cardamine hirsuta HOM05D002102 ORTHO05D008242 5.2e-63 245.4 200 64.5
Sp2g09460 Schrenkiella parvula HOM05D002102 ORTHO05D008242 8.9e-63 244.6 180 67.8
AL8G14900 Arabidopsis lyrata HOM05D002102 ORTHO05D008242 3.4e-62 242.7 179 69.3
Carub.0008s0361 Capsella rubella HOM05D002102 ORTHO05D008242 4.4e-62 242.3 184 66.8
Psat0s2609g0120 Pisum sativum HOM05D002102 ORTHO05D008242 9.8e-62 241.1 223 59.2
BcaB07g30508 Brassica carinata HOM05D002102 ORTHO05D008242 1.3e-61 240.7 180 67.8
BcaC06g31600 Brassica carinata HOM05D002102 ORTHO05D008242 1.7e-61 240.4 185 65.4
ECA232G0416 Erigeron canadensis HOM05D002102 ORTHO05D008242 2.2e-61 240.0 164 71.3
BcaC06g34527 Brassica carinata HOM05D002102 ORTHO05D008242 2.9e-61 239.6 185 64.9
A06p47030 Brassica napus HOM05D002102 ORTHO05D008242 2.9e-61 239.6 185 64.9
C07p27540 Brassica napus HOM05D002102 ORTHO05D008242 2.9e-61 239.6 185 64.9
BolC7t43285H Brassica oleracea HOM05D002102 ORTHO05D008242 2.9e-61 239.6 185 64.9
AT5G44650 Arabidopsis thaliana HOM05D002102 ORTHO05D008242 1.1e-60 237.7 250 54.4
COL.COLO4_25027 Corchorus olitorius HOM05D002102 ORTHO05D008242 4.6e-59 232.3 157 75.2
unitig_92.g28193 Utricularia gibba HOM05D002594 ORTHO05D003499 5.9e-59 231.9 220 61.4
Dinv17885 Davidia involucrata HOM05D002102 ORTHO05D008242 1.3e-58 230.7 146 79.5
Sc24g0002820 Simmondsia chinensis HOM05D002102 ORTHO05D008242 6.6e-58 228.4 216 59.7
CDE11G0809 Ceratophyllum demersum HOM05D002102 ORTHO05D008242 8.6e-58 228.0 185 64.3
BraA06t27576Z Brassica rapa HOM05D002102 ORTHO05D008242 1.1e-57 227.6 205 58.5
PGSC0003DMG401011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 1.5e-57 227.3 155 72.3
Aa31LG9G8520 Aethionema arabicum HOM05D002102 ORTHO05D008242 2.5e-57 226.5 165 68.5
Atru.chr10.236 Acer truncatum HOM05D002102 ORTHO05D008242 2.8e-56 223.0 147 74.8
PSO541G0118 Papaver somniferum HOM05D002102 ORTHO05D008242 5.8e-54 215.3 216 57.9
Lj1A1152G38 Lonicera japonica HOM05D002102 ORTHO05D008242 3.7e-53 212.6 153 72.5
MBI02_g17886_MAGBIO Magnolia biondii HOM05D002102 ORTHO05D008242 5.4e-52 208.8 228 54.8
Sopen10g001170 Solanum pennellii HOM05D002102 ORTHO05D008242 7.0e-52 208.4 220 51.4
Nitab4.5_0001299g0100 Nicotiana tabacum HOM05D002102 ORTHO05D008242 6.0e-51 205.3 147 70.1
DCAR_001256 Daucus carota HOM05D002102 ORTHO05D008242 5.0e-50 202.2 146 71.2
Migut.M02036 Erythranthe guttata HOM05D002102 ORTHO05D008242 6.6e-50 201.8 215 56.3
HPP92_001585 Vanilla planifolia HOM05D002102 ORTHO05D008242 1.5e-49 200.7 154 64.3
FAN21G2948 Fragaria x ananassa HOM05D002102 ORTHO05D008242 6.2e-48 195.3 166 62.7
Mapoly0033s0150 Marchantia polymorpha HOM05D002102 ORTHO05D008242 8.3e-45 184.9 214 51.9
Pp3c15_7910 Physcomitrium patens HOM05D002102 ORTHO05D008242 7.1e-44 181.8 212 50.9
Duzib132G0691 Durio zibethinus HOM05D002102 ORTHO05D008242 2.7e-43 179.9 215 52.1
ATR0073G005 Amborella trichopoda HOM05D002102 ORTHO05D008242 1.3e-42 177.6 182 53.8
AUR62040994 Chenopodium quinoa HOM05D002102 ORTHO05D008242 7.3e-41 171.8 121 70.2
AUR62042810 Chenopodium quinoa HOM05D002102 ORTHO05D008242 3.6e-40 169.5 122 68.9
SGA_v2.0_scaffold423G51451 Striga asiatica HOM05D002102 ORTHO05D008242 1.4e-39 167.5 187 53.5
AagrBONN_evm.TU.Sc2ySwM_368.1584 Anthoceros agrestis HOM05D002102 ORTHO05D008242 2.4e-36 156.8 201 50.2
MD05G1242700 Malus domestica HOM05D002102 ORTHO05D004119 3.9e-34 149.4 103 73.8
Actinidia31357 Actinidia chinensis HOM05D002102 ORTHO05D008242 7.6e-30 135.2 85 81.2
Oeu011782.1 Olea europaea HOM05D002102 ORTHO05D008242 6.4e-29 132.1 125 59.2
RcHm_v2.0_Chr5g0021891 Rosa chinensis HOM05D002102 ORTHO05D008242 1.4e-28 131.0 86 72.1
HPP92_001768 Vanilla planifolia HOM05D001389 ORTHO05D002892 1.4e-28 131.0 134 50.7
C02p45240 Brassica napus HOM05D002102 ORTHO05D008242 1.6e-27 127.5 145 51.7
ATR0109G022 Amborella trichopoda HOM05D002102 ORTHO05D008242 7.8e-27 125.2 85 72.9
BolC2t10554H Brassica oleracea HOM05D002102 ORTHO05D008242 4.3e-25 119.4 145 51.0
Eucgr.L03440 Eucalyptus grandis HOM05D002102 ORTHO05D008242 7.3e-25 118.6 104 62.5
RcHm_v2.0_Chr5g0021971 Rosa chinensis HOM05D002102 ORTHO05D008242 8.1e-24 115.2 74 74.3
SEGI_24162 Sequoiadendron giganteum HOM05D002102 ORTHO05D008242 9.0e-23 111.7 156 42.3
CBR_g21832 Chara braunii HOM05D002102 ORTHO05D008242 2.6e-22 110.2 184 42.4
Cre06.g280650 Chlamydomonas reinhardtii HOM05D002102 ORTHO05D008242 3.2e-20 103.2 189 40.7
Hund01844 Selenicereus undatus HOM05D002102 ORTHO05D008242 2.1e-19 100.5 156 42.3
A02p28510 Brassica napus HOM05D002102 ORTHO05D008242 3.5e-19 99.8 153 39.9
Actinidia31356 Actinidia chinensis HOM05D002102 ORTHO05D008242 1.9e-17 94.0 92 54.3
MD05G1242600 Malus domestica HOM05D002102 ORTHO05D008242 1.3e-16 91.3 66 71.2
BcaC03g16684 Brassica carinata HOM05D002102 ORTHO05D008242 2.1e-16 90.5 71 67.6
RcHm_v2.0_Chr5g0021961 Rosa chinensis HOM05D002102 ORTHO05D008242 1.8e-15 87.4 65 66.2
BraA02t07887Z Brassica rapa HOM05D002102 ORTHO05D008242 6.4e-13 79.0 104 43.3
RcHm_v2.0_Chr5g0021951 Rosa chinensis HOM05D002102 ORTHO05D008242 4.6e-11 72.8 55 63.6
RcHm_v2.0_Chr5g0021881 Rosa chinensis HOM05D002102 ORTHO05D008242 6.0e-11 72.4 85 45.9
Nitab4.5_0001815g0140 Nicotiana tabacum HOM05D002102 ORTHO05D004119 2.8e-08 63.5 47 59.6
Nitab4.5_0007687g0040 Nicotiana tabacum HOM05D002102 ORTHO05D008242 1.8e-07 60.8 43 62.8
CDE11G1016 Ceratophyllum demersum HOM05D000100 ORTHO05D000052 4.5e-06 56.2 75 45.3


User provided reference genes

Program Settings