Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G1079 Punica granatum HOM05D005694 ORTHO05D007402 1.5e-294 1015.4 506 100.0
COL.COLO4_11482 Corchorus olitorius HOM05D005694 ORTHO05D007402 5.7e-164 581.6 429 71.3
Prupe.6G229100 Prunus persica HOM05D005694 ORTHO05D007402 1.1e-162 577.4 418 70.3
RcHm_v2.0_Chr2g0106661 Rosa chinensis HOM05D005694 ORTHO05D007402 1.8e-162 576.6 420 70.2
Thecc.01G063300 Theobroma cacao HOM05D005694 ORTHO05D007402 2.4e-162 576.2 430 71.4
FvH4_1g16760 Fragaria vesca HOM05D005694 ORTHO05D007402 3.1e-162 575.9 419 70.2
Gorai.007G218000 Gossypium raimondii HOM05D005694 ORTHO05D007402 1.2e-161 573.9 395 71.9
SGA_v2.0_scaffold143G35788 Striga asiatica HOM05D005694 ORTHO05D007402 1.3e-160 570.5 383 73.4
Duzib264G0643 Durio zibethinus HOM05D005694 ORTHO05D007402 1.7e-160 570.1 377 74.8
Gohir.D11G203300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 2.9e-160 569.3 381 74.0
FAN23G2399 Fragaria x ananassa HOM05D005694 ORTHO05D007402 3.8e-160 568.9 422 69.7
arahy.Tifrunner.gnm1.ann1.ZT89Y7 Arachis hypogaea HOM05D005694 ORTHO05D007402 8.5e-160 567.8 402 69.7
Sabra05G0051000 Salix brachista HOM05D005694 ORTHO05D007402 5.5e-159 565.1 397 70.0
FAN19G0282 Fragaria x ananassa HOM05D005694 ORTHO05D007402 2.1e-158 563.1 419 69.0
Manes.12G108400 Manihot esculenta HOM05D005694 ORTHO05D007402 2.7e-158 562.8 410 69.8
Haze_15351 Corylus avellana HOM05D005694 ORTHO05D007402 3.6e-158 562.4 420 68.3
FAN26G1197 Fragaria x ananassa HOM05D005694 ORTHO05D007402 4.7e-158 562.0 419 68.7
Ciclev10025664m.g Citrus clementina HOM05D005694 ORTHO05D007402 8.0e-158 561.2 390 71.5
Cpa.g.sc6.99 Carica papaya HOM05D005694 ORTHO05D007402 2.3e-157 559.7 431 66.8
Cfa004061 Carpinus fangiana HOM05D005694 ORTHO05D007402 2.6e-156 556.2 423 67.1
CANSAT25G2140 Cannabis sativa HOM05D005694 ORTHO05D007402 3.3e-156 555.8 380 72.6
QL06p040237 Quercus lobata HOM05D005694 ORTHO05D007402 1.7e-155 553.5 420 66.4
Sed0004561 Sechium edule HOM05D005694 ORTHO05D007402 2.2e-155 553.1 414 66.2
Atru.chr3.251 Acer truncatum HOM05D005694 ORTHO05D007402 2.8e-155 552.7 382 70.4
Glyma.17G167200 Glycine max HOM05D005694 ORTHO05D007402 3.7e-155 552.4 410 68.8
Potri.005G060500 Populus trichocarpa HOM05D005694 ORTHO05D007402 3.7e-155 552.4 381 70.6
CsaV3_6G043550 Cucumis sativus L. HOM05D005694 ORTHO05D007402 8.2e-155 551.2 413 66.3
MELO3C007585.2 Cucumis melo HOM05D005694 ORTHO05D007402 1.8e-154 550.1 424 66.3
ClCG01G017080 Citrullus lanatus HOM05D005694 ORTHO05D007402 3.1e-154 549.3 422 66.4
CANSAT25G0291 Cannabis sativa HOM05D005694 ORTHO05D007402 5.3e-154 548.5 413 67.8
MSTRG.2849 Avicennia marina HOM05D005694 ORTHO05D007402 9.1e-154 547.7 411 67.9
Oeu037163.1 Olea europaea HOM05D005694 ORTHO05D007402 1.2e-153 547.4 383 70.0
Lalb_Chr16g0388811 Lupinus albus HOM05D005694 ORTHO05D007402 1.6e-153 547.0 379 68.9
Nitab4.5_0002657g0010 Nicotiana tabacum HOM05D005694 ORTHO05D007402 1.6e-153 547.0 424 64.9
BraA05t22832Z Brassica rapa HOM05D005694 ORTHO05D007402 2.0e-153 546.6 418 67.2
Sopen03g008170 Solanum pennellii HOM05D005694 ORTHO05D007402 2.6e-153 546.2 391 67.5
Solyc03g044190.3 Solanum lycopersicum HOM05D005694 ORTHO05D007402 1.7e-152 543.5 413 64.9
BcaB06g28844 Brassica carinata HOM05D005694 ORTHO05D007402 2.9e-152 542.7 424 65.3
CARHR280330 Cardamine hirsuta HOM05D005694 ORTHO05D007402 6.5e-152 541.6 416 66.6
Lj4g0009127 Lotus japonicus HOM05D005694 ORTHO05D007402 6.5e-152 541.6 392 68.4
Eucgr.I00787 Eucalyptus grandis HOM05D005694 ORTHO05D007402 8.5e-152 541.2 379 73.4
HanXRQChr12g0377261 Helianthus annuus HOM05D005694 ORTHO05D007402 8.5e-152 541.2 416 67.5
EL10Ac6g15690 Beta vulgaris HOM05D005694 ORTHO05D007402 1.1e-151 540.8 393 68.7
Thhalv10004317m.g Eutrema salsugineum HOM05D005694 ORTHO05D007402 1.5e-151 540.4 419 65.9
A05p41050 Brassica napus HOM05D005694 ORTHO05D007402 1.9e-151 540.0 378 70.1
CiPaw.01G012900 Carya illinoinensis HOM05D005694 ORTHO05D007402 3.2e-151 539.3 420 65.5
arahy.Tifrunner.gnm1.ann1.MA1EVV Arachis hypogaea HOM05D005694 ORTHO05D007402 4.2e-151 538.9 469 59.9
AL8G44040 Arabidopsis lyrata HOM05D005694 ORTHO05D007402 5.5e-151 538.5 378 70.4
TAR625G0317 Trochodendron aralioides HOM05D005694 ORTHO05D007402 7.2e-151 538.1 386 68.7
Migut.H00394 Erythranthe guttata HOM05D005694 ORTHO05D007402 9.4e-151 537.7 398 68.6
Gohir.A11G220300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 9.4e-151 537.7 414 67.1
MD02G1178800 Malus domestica HOM05D005694 ORTHO05D007402 9.4e-151 537.7 413 66.8
Sp2g29370 Schrenkiella parvula HOM05D005694 ORTHO05D007402 1.2e-150 537.3 374 72.2
Lsat_1_v5_gn_3_88661 Lactuca sativa HOM05D005694 ORTHO05D007402 1.6e-150 537.0 379 69.4
Peaxi162Scf00365g00618 Petunia axillaris HOM05D005694 ORTHO05D007402 2.7e-150 536.2 388 68.6
PGSC0003DMG400014873 Solanum tuberosum HOM05D005694 ORTHO05D007402 2.7e-150 536.2 385 67.8
BcaC05g29844 Brassica carinata HOM05D005694 ORTHO05D007402 3.6e-150 535.8 424 65.1
BolC5t34672H Brassica oleracea HOM05D005694 ORTHO05D007402 3.6e-150 535.8 424 65.1
Eucgr.I00761 Eucalyptus grandis HOM05D005694 ORTHO05D007402 3.6e-150 535.8 379 72.8
AUR62003938 Chenopodium quinoa HOM05D005694 ORTHO05D007402 6.1e-150 535.0 403 67.7
Psat4g084360 Pisum sativum HOM05D005694 ORTHO05D007402 1.0e-149 534.3 414 64.7
Nitab4.5_0003962g0030 Nicotiana tabacum HOM05D005694 ORTHO05D007402 1.8e-149 533.5 393 67.4
Hund16366 Selenicereus undatus HOM05D005694 ORTHO05D007402 1.8e-149 533.5 421 65.1
AT5G67290 Arabidopsis thaliana HOM05D005694 ORTHO05D007402 5.2e-149 531.9 419 65.6
AUR62038254 Chenopodium quinoa HOM05D005694 ORTHO05D007402 5.2e-149 531.9 430 64.7
THA.LOC104819246 Tarenaya hassleriana HOM05D005694 ORTHO05D007402 5.2e-149 531.9 380 68.9
Medtr4g094962 Medicago truncatula HOM05D005694 ORTHO05D007402 1.5e-148 530.4 389 67.1
Ca_22124_v3 Cicer arietinum L. HOM05D005694 ORTHO05D007402 2.0e-148 530.0 372 69.1
Carub.0008s2721 Capsella rubella HOM05D005694 ORTHO05D007402 4.4e-148 528.9 418 65.3
VMungo0251G0564 Vigna mungo HOM05D005694 ORTHO05D007402 5.7e-148 528.5 407 65.6
Nn1g04704 Nelumbo nucifera HOM05D005694 ORTHO05D007402 9.8e-148 527.7 405 66.7
TPR.G23863 Trifolium pratense HOM05D005694 ORTHO05D007402 3.7e-147 525.8 445 60.7
C05p60220 Brassica napus HOM05D005694 ORTHO05D007402 1.4e-146 523.9 449 61.5
ECA246G1807 Erigeron canadensis HOM05D005694 ORTHO05D007402 2.4e-146 523.1 392 67.6
TAR625G0863 Trochodendron aralioides HOM05D005694 ORTHO05D007402 2.4e-146 523.1 393 66.7
Aqoxy6G02871 Aquilegia oxysepala HOM05D005694 ORTHO05D007402 4.1e-146 522.3 423 63.8
Duzib147G1433 Durio zibethinus HOM05D005694 ORTHO05D007402 7.0e-146 521.5 386 69.7
PSO541G0377 Papaver somniferum HOM05D005694 ORTHO05D007402 7.0e-146 521.5 386 68.1
Actinidia12019 Actinidia chinensis HOM05D005694 ORTHO05D007402 2.7e-145 519.6 366 69.7
Rhsim10G0112600 Rhododendron simsii HOM05D005694 ORTHO05D007402 2.7e-145 519.6 415 63.1
Aa31LG1G15820 Aethionema arabicum HOM05D005694 ORTHO05D007402 7.7e-145 518.1 382 65.2
unitig_46.g18707 Utricularia gibba HOM05D005694 ORTHO05D007402 2.2e-144 516.5 382 65.4
Sc16g0005230 Simmondsia chinensis HOM05D005694 ORTHO05D007402 6.5e-144 515.0 392 66.6
CSS0006569 Camellia sinensis var. sinensis HOM05D005694 ORTHO05D007402 1.9e-143 513.5 371 68.7
PSO675G2151 Papaver somniferum HOM05D005694 ORTHO05D007402 4.2e-143 512.3 406 65.0
Phvul.003G240300 Phaseolus vulgaris HOM05D005694 ORTHO05D007402 8.0e-142 508.1 408 63.2
TAR381G0027 Trochodendron aralioides HOM05D005694 ORTHO05D007402 1.0e-141 507.7 375 68.8
TAR381G0285 Trochodendron aralioides HOM05D005694 ORTHO05D007402 1.0e-141 507.7 375 68.8
Lj4g0018653 Lotus japonicus HOM05D005694 ORTHO05D007402 7.5e-140 501.5 399 64.7
DCAR_025759 Daucus carota HOM05D005694 ORTHO05D007402 2.8e-139 499.6 356 69.7
Glyma.05G097800 Glycine max HOM05D005694 ORTHO05D007402 3.7e-139 499.2 405 62.2
Cc11_g04760 Coffea canephora HOM05D005694 ORTHO05D007402 9.5e-135 484.6 380 65.8
Sc16g0005220 Simmondsia chinensis HOM05D005694 ORTHO05D007402 1.0e-133 481.1 392 63.3
Dinv26866 Davidia involucrata HOM05D005694 ORTHO05D007402 5.2e-133 478.8 371 66.0
ATR1098G030 Amborella trichopoda HOM05D005694 ORTHO05D007402 9.5e-127 458.0 397 58.7
vmacro05254 Vaccinium macrocarpon HOM05D005694 ORTHO05D007402 6.8e-125 451.8 436 56.2
CDE06G0326 Ceratophyllum demersum HOM05D005694 ORTHO05D007402 7.5e-124 448.4 365 61.6
HPP92_017733 Vanilla planifolia HOM05D005694 ORTHO05D007402 3.9e-120 436.0 374 60.4
Os07g0155100 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 2.1e-118 430.3 385 60.0
Dinv30033 Davidia involucrata HOM05D005694 ORTHO05D007402 1.5e-116 424.1 408 56.1
Zm00001eb300250 Zea mays HOM05D005694 ORTHO05D007402 2.9e-115 419.9 386 58.3
AagrBONN_evm.TU.Sc2ySwM_117.3787 Anthoceros agrestis HOM05D005694 ORTHO05D007402 8.3e-115 418.3 392 56.1
SMO351G0208 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 3.5e-113 412.9 394 55.1
Mapoly0178s0017 Marchantia polymorpha HOM05D005694 ORTHO05D007402 7.8e-113 411.8 389 55.3
SEGI_26559 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 2.5e-111 406.8 391 55.0
Pp3c14_12180 Physcomitrium patens HOM05D005694 ORTHO05D007402 4.4e-108 396.0 466 49.1
HanXRQChr02g0044351 Helianthus annuus HOM05D005694 ORTHO05D007402 9.2e-106 388.3 376 54.0
SMO367G0384 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 2.8e-102 376.7 375 51.2
ECA238G4251 Erigeron canadensis HOM05D005694 ORTHO05D007402 5.8e-100 369.0 390 51.8
HPP92_017700 Vanilla planifolia HOM05D005694 ORTHO05D007402 2.1e-97 360.5 320 60.0
Lj7C77T1 Lonicera japonica HOM05D005694 ORTHO05D007402 1.1e-93 348.2 293 61.4
CAN.G572.58 Capsicum annuum HOM05D005694 ORTHO05D007402 2.6e-92 343.6 265 63.4
SEGI_01647 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 3.8e-91 339.7 392 48.7
Aa31LG1G15830 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.8e-85 320.9 224 65.6
Mapoly0178s0018 Marchantia polymorpha HOM05D005694 ORTHO05D007402 2.4e-85 320.5 317 55.2
Cre16.g671450 Chlamydomonas reinhardtii HOM05D005694 ORTHO05D007402 2.4e-77 293.9 400 43.8
FAN28G1711 Fragaria x ananassa HOM05D005694 ORTHO05D007402 2.2e-75 287.3 178 77.0
FAN28G1889 Fragaria x ananassa HOM05D005694 ORTHO05D007402 2.2e-75 287.3 178 77.0
MCO03G407 Micromonas commoda HOM05D005694 ORTHO05D007402 1.9e-66 257.7 390 41.3
MCO09G374 Micromonas commoda HOM05D005694 ORTHO05D007402 5.7e-55 219.5 447 37.1
Actinidia36463 Actinidia chinensis HOM05D005694 ORTHO05D007402 2.2e-54 217.6 169 62.7
Lj7A77T5 Lonicera japonica HOM05D005694 ORTHO05D007402 7.0e-45 186.0 117 73.5
Cfa023451 Carpinus fangiana HOM05D000115 ORTHO05D005317 3.8e-43 180.3 402 34.8
Aa31LG1G15840 Aethionema arabicum HOM05D005694 ORTHO05D007402 2.0e-39 167.9 124 68.5
Aa31sc2295G20 Aethionema arabicum HOM05D005694 ORTHO05D007402 4.4e-39 166.8 136 62.5
Aa31LG1G18440 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.2e-36 158.7 148 58.8
Medtr8g072720 Medicago truncatula HOM05D005694 ORTHO05D007402 1.1e-29 135.6 82 75.6
PRCOL_00002834 Prasinoderma coloniale HOM05D005694 ORTHO05D007402 2.9e-27 127.5 396 29.3
BcaNung00805 Brassica carinata HOM05D005694 ORTHO05D007402 3.9e-11 73.9 69 56.5
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 1.6e-09 68.6 406 24.9
Aa31LG1G18450 Aethionema arabicum HOM05D005694 ORTHO05D007402 2.1e-09 68.2 73 45.2
Aa31sc2295G10 Aethionema arabicum HOM05D005694 ORTHO05D007402 2.1e-09 68.2 73 45.2
Cfa026332 Carpinus fangiana HOM05D005694 ORTHO05D123404 6.2e-09 66.6 315 24.1
Os01g0594800 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 2.3e-08 64.7 87 44.8
Mapoly0020s0122 Marchantia polymorpha HOM05D006204 ORTHO05D007851 7.5e-07 59.7 429 23.5


User provided reference genes

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