Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 2.6e-206 721.8 372 100.0
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 2.5e-169 599.0 334 88.9
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 1.1e-167 593.6 344 85.5
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 1.2e-166 590.1 355 83.1
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 3.2e-164 582.0 340 85.0
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 4.2e-164 581.6 346 84.7
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 1.2e-163 580.1 334 86.8
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 1.2e-163 580.1 344 84.0
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 2.7e-163 578.9 344 83.1
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 1.0e-162 577.0 347 82.4
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 1.8e-162 576.2 347 83.0
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 5.1e-162 574.7 338 85.2
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 6.7e-162 574.3 345 82.9
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 6.7e-162 574.3 347 83.9
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 3.3e-161 572.0 327 85.0
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 4.3e-161 571.6 354 81.4
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 4.3e-161 571.6 335 83.0
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 7.4e-161 570.9 338 84.0
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 7.4e-161 570.9 346 82.9
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 2.1e-160 569.3 336 83.0
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 2.8e-160 568.9 328 85.1
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 2.8e-160 568.9 340 82.4
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 8.2e-160 567.4 331 85.2
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.1e-159 567.0 352 82.1
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 1.4e-159 566.6 333 84.4
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 2.4e-159 565.8 348 80.7
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 2.4e-159 565.8 337 82.5
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 3.1e-159 565.5 352 81.5
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 3.1e-159 565.5 336 82.1
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 3.1e-159 565.5 336 82.1
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 5.3e-159 564.7 352 81.8
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 6.9e-159 564.3 337 83.4
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 9.0e-159 563.9 347 81.0
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 9.0e-159 563.9 340 81.8
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 1.2e-158 563.5 351 80.9
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 1.2e-158 563.5 349 80.8
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 2.0e-158 562.8 339 82.9
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 2.0e-158 562.8 347 80.7
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 5.9e-158 561.2 329 85.1
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 1.0e-157 560.5 379 75.7
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 1.3e-157 560.1 327 83.5
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 1.3e-157 560.1 344 82.8
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 1.3e-157 560.1 340 81.8
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 1.3e-157 560.1 346 81.5
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 2.2e-157 559.3 344 81.4
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 2.2e-157 559.3 329 84.8
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 2.2e-157 559.3 329 84.8
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 2.2e-157 559.3 329 84.8
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 2.9e-157 558.9 338 82.5
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 5.0e-157 558.1 329 84.5
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 5.0e-157 558.1 333 82.9
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 6.5e-157 557.8 328 83.8
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 6.5e-157 557.8 333 82.3
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.1e-156 557.0 330 83.0
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 2.5e-156 555.8 345 79.7
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 4.2e-156 555.1 356 78.7
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 4.2e-156 555.1 332 82.5
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 5.5e-156 554.7 334 82.3
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 7.2e-156 554.3 325 84.6
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 9.3e-156 553.9 328 83.2
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 9.3e-156 553.9 325 84.6
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 9.3e-156 553.9 328 83.5
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 1.2e-155 553.5 333 82.0
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 2.7e-155 552.4 333 83.2
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 4.6e-155 551.6 332 82.2
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 6.1e-155 551.2 325 84.3
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 6.1e-155 551.2 325 84.3
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 7.9e-155 550.8 341 80.4
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 7.9e-155 550.8 347 79.3
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 1.3e-154 550.1 349 79.4
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 1.8e-154 549.7 356 78.4
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 6.7e-154 547.7 333 82.9
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 6.7e-154 547.7 348 79.3
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 8.7e-154 547.4 329 83.0
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.5e-153 546.6 325 83.4
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 1.9e-153 546.2 356 77.8
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 1.9e-153 546.2 364 78.3
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 5.7e-153 544.7 333 81.7
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 5.7e-153 544.7 333 82.0
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 5.7e-153 544.7 333 81.7
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 7.4e-153 544.3 342 80.4
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 2.8e-152 542.3 343 79.0
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 3.7e-152 542.0 349 78.5
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 4.8e-152 541.6 343 79.3
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 4.8e-152 541.6 332 80.4
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 8.2e-152 540.8 365 75.9
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 3.1e-151 538.9 331 81.3
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 9.0e-151 537.3 344 78.5
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 1.5e-150 536.6 340 79.4
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 2.6e-150 535.8 331 81.3
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 2.2e-149 532.7 325 79.4
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 5.0e-149 531.6 327 80.7
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 6.5e-149 531.2 341 77.7
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 8.5e-149 530.8 333 79.0
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 5.5e-148 528.1 301 85.4
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 9.4e-148 527.3 343 78.1
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 1.6e-147 526.6 323 81.4
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 4.6e-147 525.0 331 80.1
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 1.5e-145 520.0 338 77.5
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 2.0e-145 519.6 365 73.7
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 1.3e-144 516.9 340 77.9
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 3.7e-144 515.4 369 72.1
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 3.1e-143 512.3 397 68.3
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 1.2e-142 510.4 296 85.5
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 2.7e-139 499.2 403 66.3
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 6.1e-139 498.0 337 75.1
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 1.4e-138 496.9 328 72.3
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 2.3e-138 496.1 360 71.9
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 9.7e-137 490.7 333 75.1
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 4.8e-136 488.4 359 69.4
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 5.3e-135 485.0 329 75.4
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 4.5e-134 481.9 286 83.6
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 7.0e-127 458.0 365 66.6
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 1.7e-125 453.4 267 85.0
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 8.5e-125 451.1 317 72.9
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 1.5e-124 450.3 353 64.0
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 1.5e-124 450.3 331 65.9
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 4.2e-124 448.7 335 65.1
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 1.2e-123 447.2 307 72.6
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 6.1e-123 444.9 331 66.5
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 6.1e-123 444.9 366 65.0
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 8.0e-123 444.5 331 66.5
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 1.4e-122 443.7 317 69.7
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 1.1e-119 434.1 298 76.5
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.8e-119 433.3 268 80.6
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 1.2e-115 420.6 324 63.9
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 2.1e-115 419.9 319 65.2
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 1.7e-112 410.2 357 62.5
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 7.0e-111 404.8 248 82.3
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 1.6e-110 403.7 240 87.5
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 3.5e-110 402.5 343 64.1
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 3.3e-108 396.0 240 82.1
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.2e-107 394.0 369 57.2
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 2.8e-107 392.9 362 60.8
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 2.3e-106 389.8 270 75.6
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 6.8e-106 388.3 300 64.0
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.8e-103 380.2 273 71.1
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 3.2e-103 379.4 274 67.2
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 8.6e-101 371.3 244 74.6
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.9e-100 370.2 246 76.4
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 2.1e-99 366.7 340 57.1
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 3.4e-97 359.4 236 75.8
AL4G45340 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 2.3e-85 320.1 197 80.2
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 2.1e-75 287.0 286 58.7
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 7.6e-73 278.5 203 72.9
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 7.1e-63 245.4 281 48.8
arahy.Tifrunner.gnm1.ann1.CIF5FW Arachis hypogaea HOM05D004048 ORTHO05D004859 1.8e-58 230.7 168 68.5
SEGI_25526 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 1.8e-58 230.7 161 68.3
PGSC0003DMG400018716 Solanum tuberosum HOM05D004048 ORTHO05D004859 1.6e-54 217.6 133 78.9
Os01g0225400 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 3.5e-54 216.5 130 80.0
TPR.G28294 Trifolium pratense HOM05D004048 ORTHO05D004859 1.0e-53 214.9 254 52.0
Cfa003872 Carpinus fangiana HOM05D004048 ORTHO05D004859 2.5e-52 210.3 343 43.4
SHI16536 Sapria himalayana HOM05D004048 ORTHO05D004859 1.5e-49 201.1 133 73.7
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 1.6e-46 191.0 233 41.6
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 1.7e-40 171.0 210 46.7
MBI17_g16531_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.9e-39 167.5 104 76.9
Lj6g0001313 Lotus japonicus HOM05D004048 ORTHO05D004859 1.3e-37 161.4 108 70.4
FAN01G2460 Fragaria x ananassa HOM05D004048 ORTHO05D004859 4.3e-36 156.4 91 81.3
Medtr4g037315 Medicago truncatula HOM05D004048 ORTHO05D004859 8.2e-35 152.1 95 74.7
CAN.G439.28 Capsicum annuum HOM05D004048 ORTHO05D004859 1.4e-34 151.4 88 78.4
MBI12_g43904_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 2.6e-33 147.1 96 80.2
Ca_03489_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 5.0e-32 142.9 110 70.0
Medtr4g037275 Medicago truncatula HOM05D004048 ORTHO05D004859 3.6e-30 136.7 76 85.5
arahy.Tifrunner.gnm1.ann1.63JPLQ Arachis hypogaea HOM05D004048 ORTHO05D004859 7.4e-28 129.0 81 72.8
Actinidia20163 Actinidia chinensis HOM05D004048 ORTHO05D004859 4.8e-27 126.3 190 47.4
ATR0751G274 Amborella trichopoda HOM05D004048 ORTHO05D004859 2.1e-22 110.9 94 54.3
FAN10G2371 Fragaria x ananassa HOM05D004048 ORTHO05D038698 2.0e-20 104.4 73 69.9
AL4G45350 Arabidopsis lyrata HOM05D004048 ORTHO05D038698 3.3e-20 103.6 59 78.0
Potri.002G164601 Populus trichocarpa HOM05D004048 ORTHO05D004859 5.7e-20 102.8 81 59.3
arahy.Tifrunner.gnm1.ann1.DMYH1R Arachis hypogaea HOM05D004048 ORTHO05D004859 1.3e-19 101.7 72 65.3
SGA_v2.0_scaffold4G02383 Striga asiatica HOM05D004048 ORTHO05D051375 1.1e-18 98.6 63 81.0
HanXRQChr15g0474641 Helianthus annuus HOM05D004048 ORTHO05D004859 4.1e-18 96.7 62 77.4
DCAR_025216 Daucus carota HOM05D003118 ORTHO05D003618 1.5e-15 88.2 78 66.7
arahy.Tifrunner.gnm1.ann1.GKUV9U Arachis hypogaea HOM05D004048 ORTHO05D004859 3.2e-07 60.5 45 64.4


User provided reference genes

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