Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G0818 Punica granatum HOM05D003926 ORTHO05D005273 0.0e+00 9960.9 5083 100.0
QL02p065183 Quercus lobata HOM05D003926 ORTHO05D005273 0.0e+00 7170.5 5155 71.9
Prupe.3G248400 Prunus persica HOM05D003926 ORTHO05D005273 0.0e+00 7162.0 5118 71.7
Thecc.04G107500 Theobroma cacao HOM05D003926 ORTHO05D005273 0.0e+00 7117.7 5107 71.8
Atru.chr8.620 Acer truncatum HOM05D003926 ORTHO05D005273 0.0e+00 7100.8 5121 71.2
RcHm_v2.0_Chr2g0164791 Rosa chinensis HOM05D003926 ORTHO05D005273 0.0e+00 7099.2 5123 71.1
Ciclev10010885m.g Citrus clementina HOM05D003926 ORTHO05D005273 0.0e+00 7086.5 5133 71.4
CiPaw.03G082600 Carya illinoinensis HOM05D003926 ORTHO05D005273 0.0e+00 7062.2 5014 72.2
MD17G1066300 Malus domestica HOM05D003926 ORTHO05D005273 0.0e+00 7061.8 5102 71.3
MD09G1075600 Malus domestica HOM05D003926 ORTHO05D005273 0.0e+00 7056.8 5101 70.9
Potri.017G101100 Populus trichocarpa HOM05D003926 ORTHO05D005273 0.0e+00 7034.9 5120 70.5
FvH4_6g46320 Fragaria vesca HOM05D003926 ORTHO05D005273 0.0e+00 7034.1 5124 70.7
Manes.02G059900 Manihot esculenta HOM05D003926 ORTHO05D005273 0.0e+00 7024.5 5126 70.6
Gorai.001G206500 Gossypium raimondii HOM05D003926 ORTHO05D005273 0.0e+00 7002.1 5107 70.7
Duzib133G0169 Durio zibethinus HOM05D003926 ORTHO05D005273 0.0e+00 6990.2 5110 70.5
CSS0002647 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 0.0e+00 6974.8 5123 69.6
CSS0025257 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 0.0e+00 6974.0 5123 69.6
Sabra17G0086900 Salix brachista HOM05D003926 ORTHO05D005273 0.0e+00 6950.5 5118 69.9
CANSAT64G0948 Cannabis sativa HOM05D003926 ORTHO05D005273 0.0e+00 6924.7 5116 70.2
Actinidia18083 Actinidia chinensis HOM05D003926 ORTHO05D005273 0.0e+00 6880.4 5107 68.7
Cfa007698 Carpinus fangiana HOM05D003926 ORTHO05D005273 0.0e+00 6868.9 4840 72.9
Duzib211G0130 Durio zibethinus HOM05D003926 ORTHO05D005273 0.0e+00 6788.7 5103 69.2
Lj1g0024205 Lotus japonicus HOM05D003926 ORTHO05D005273 0.0e+00 6783.4 5096 68.4
TWI32G0285 Tripterygium wilfordii HOM05D003926 ORTHO05D005273 0.0e+00 6769.1 5116 68.5
ClCG11G004990 Citrullus lanatus HOM05D003926 ORTHO05D005273 0.0e+00 6763.3 5161 67.9
arahy.Tifrunner.gnm1.ann1.FDTJ9Q Arachis hypogaea HOM05D003926 ORTHO05D005273 0.0e+00 6756.4 5107 68.4
arahy.Tifrunner.gnm1.ann1.IQIT5J Arachis hypogaea HOM05D003926 ORTHO05D005273 0.0e+00 6747.5 5101 68.4
CsaV3_5G038720 Cucumis sativus L. HOM05D003926 ORTHO05D005273 0.0e+00 6734.0 5118 68.0
MELO3C022053.2 Cucumis melo HOM05D003926 ORTHO05D005273 0.0e+00 6733.7 5119 67.9
Nn3g17538 Nelumbo nucifera HOM05D003926 ORTHO05D005273 0.0e+00 6723.6 5129 67.7
Phvul.008G025700 Phaseolus vulgaris HOM05D003926 ORTHO05D005273 0.0e+00 6714.4 5118 67.7
Haze_14378 Corylus avellana HOM05D003926 ORTHO05D005273 0.0e+00 6704.0 5115 68.4
Glyma.18G275200 Glycine max HOM05D003926 ORTHO05D005273 0.0e+00 6701.3 5128 67.5
Lj4C124T8 Lonicera japonica HOM05D003926 ORTHO05D005273 0.0e+00 6699.8 5176 67.3
TPR.G23405 Trifolium pratense HOM05D003926 ORTHO05D005273 0.0e+00 6690.1 5122 67.1
Medtr7g017100 Medicago truncatula HOM05D003926 ORTHO05D005273 0.0e+00 6673.2 5093 67.4
TAR374G0863 Trochodendron aralioides HOM05D003926 ORTHO05D005273 0.0e+00 6656.2 4851 70.2
Sed0020046 Sechium edule HOM05D003926 ORTHO05D005273 0.0e+00 6645.4 5099 67.3
Lalb_Chr21g0318281 Lupinus albus HOM05D003926 ORTHO05D005273 0.0e+00 6645.1 5120 67.1
Aqoxy3G03752 Aquilegia oxysepala HOM05D003926 ORTHO05D005273 0.0e+00 6574.2 5130 66.6
Hund16238 Selenicereus undatus HOM05D003926 ORTHO05D005273 0.0e+00 6545.7 5115 66.8
PSO782G5674 Papaver somniferum HOM05D003926 ORTHO05D005273 0.0e+00 6543.0 5121 66.1
PSO063G5950 Papaver somniferum HOM05D003926 ORTHO05D005273 0.0e+00 6537.6 5121 66.1
HanXRQChr15g0464821 Helianthus annuus HOM05D003926 ORTHO05D005273 0.0e+00 6509.9 5127 66.2
AUR62023153 Chenopodium quinoa HOM05D003926 ORTHO05D005273 0.0e+00 6508.3 5142 65.7
AUR62009475 Chenopodium quinoa HOM05D003926 ORTHO05D005273 0.0e+00 6491.0 5129 65.6
Cc07_g04520 Coffea canephora HOM05D003926 ORTHO05D005273 0.0e+00 6477.1 5131 66.2
Psat3g203080 Pisum sativum HOM05D003926 ORTHO05D005273 0.0e+00 6474.8 5118 65.8
Sopen02g034050 Solanum pennellii HOM05D003926 ORTHO05D005273 0.0e+00 6469.0 5127 65.4
ECA232G4780 Erigeron canadensis HOM05D003926 ORTHO05D005273 0.0e+00 6462.9 5117 65.6
Solyc02g089260.4 Solanum lycopersicum HOM05D003926 ORTHO05D005273 0.0e+00 6448.2 5127 65.2
EL10Ac2g04434 Beta vulgaris HOM05D003926 ORTHO05D005273 0.0e+00 6427.0 5123 65.3
TAR622G1093 Trochodendron aralioides HOM05D003926 ORTHO05D005273 0.0e+00 6419.3 4740 69.4
Lsat_1_v5_gn_4_173381 Lactuca sativa HOM05D003926 ORTHO05D005273 0.0e+00 6389.3 5127 65.7
Sc14g0004890 Simmondsia chinensis HOM05D003926 ORTHO05D005273 0.0e+00 6379.7 5132 64.9
Aa31LG5G12790 Aethionema arabicum HOM05D003926 ORTHO05D005273 0.0e+00 6376.2 5125 64.9
Thhalv10019869m.g Eutrema salsugineum HOM05D003926 ORTHO05D005273 0.0e+00 6369.6 5103 65.0
AL3G11530 Arabidopsis lyrata HOM05D003926 ORTHO05D005273 0.0e+00 6367.3 5118 65.0
Ca_06914_v3 Cicer arietinum L. HOM05D003926 ORTHO05D005273 0.0e+00 6357.7 4840 67.5
Ca_06916_v3 Cicer arietinum L. HOM05D003926 ORTHO05D005273 0.0e+00 6357.7 4840 67.5
AT3G02260 Arabidopsis thaliana HOM05D003926 ORTHO05D005273 0.0e+00 6353.5 5120 64.8
CARHR076230 Cardamine hirsuta HOM05D003926 ORTHO05D005273 0.0e+00 6350.4 5105 64.9
MSTRG.23855 Avicennia marina HOM05D003926 ORTHO05D005273 0.0e+00 6350.0 5119 64.9
Sp3g01330 Schrenkiella parvula HOM05D003926 ORTHO05D005273 0.0e+00 6348.8 5120 64.6
THA.LOC104802985 Tarenaya hassleriana HOM05D003926 ORTHO05D005273 0.0e+00 6341.5 5122 65.0
BolC5t35094H Brassica oleracea HOM05D003926 ORTHO05D005273 0.0e+00 6340.4 5120 64.8
C09p75640 Brassica napus HOM05D003926 ORTHO05D005273 0.0e+00 6339.6 5104 64.9
MBI15_g05000_MAGBIO Magnolia biondii HOM05D003926 ORTHO05D005273 0.0e+00 6321.1 4855 67.5
Rhsim10G0059600 Rhododendron simsii HOM05D003926 ORTHO05D005273 0.0e+00 6304.9 4845 67.0
BraA05t23147Z Brassica rapa HOM05D003926 ORTHO05D005273 0.0e+00 6300.3 5133 64.4
Ah.16g101010 Amaranthus hybridus HOM05D003926 ORTHO05D005273 0.0e+00 6299.2 5115 64.6
Carub.0003s0138 Capsella rubella HOM05D003926 ORTHO05D005273 0.0e+00 6276.0 4926 66.2
CAN.G497.55 Capsicum annuum HOM05D003926 ORTHO05D005273 0.0e+00 6243.7 5123 63.8
COL.COLO4_10659 Corchorus olitorius HOM05D003926 ORTHO05D005273 0.0e+00 6225.6 4132 76.8
DCAR_011007 Daucus carota HOM05D003926 ORTHO05D005273 0.0e+00 6209.4 4847 65.8
Lalb_Chr06g0174881 Lupinus albus HOM05D003926 ORTHO05D005273 0.0e+00 6205.2 5140 63.5
Dinv34905 Davidia involucrata HOM05D003926 ORTHO05D005273 0.0e+00 6111.9 4842 65.7
SGA_v2.0_scaffold52G19072 Striga asiatica HOM05D003926 ORTHO05D005273 0.0e+00 5932.8 4854 63.8
ATR0691G267 Amborella trichopoda HOM05D003926 ORTHO05D005273 0.0e+00 5820.4 5132 60.1
GSVIVG01036538001 Vitis vinifera HOM05D003926 ORTHO05D005273 0.0e+00 5784.9 4959 62.6
ATR1101G059 Amborella trichopoda HOM05D003926 ORTHO05D005273 0.0e+00 5739.1 5132 59.7
Os09g0247700 Oryza sativa ssp. japonica HOM05D003926 ORTHO05D005273 0.0e+00 5656.3 5114 58.7
SEGI_07483 Sequoiadendron giganteum HOM05D003926 ORTHO05D005273 0.0e+00 5408.2 5174 56.0
Zm00001eb308350 Zea mays HOM05D003926 ORTHO05D005273 0.0e+00 5341.9 4909 57.8
Peaxi162Scf00020g02342 Petunia axillaris HOM05D003926 ORTHO05D005273 0.0e+00 4986.4 3716 69.6
Lj1g0000156 Lotus japonicus HOM05D003926 ORTHO05D005273 0.0e+00 4919.0 3214 77.5
Mapoly0031s0115 Marchantia polymorpha HOM05D003926 ORTHO05D005273 0.0e+00 4666.3 5294 49.8
Migut.H00584 Erythranthe guttata HOM05D003926 ORTHO05D005273 0.0e+00 4574.2 3846 61.8
Pp3c11_22340 Physcomitrium patens HOM05D003926 ORTHO05D005273 0.0e+00 4461.8 5282 48.6
Pp3c7_7030 Physcomitrium patens HOM05D003926 ORTHO05D005273 0.0e+00 4343.5 5276 47.7
SMO361G0659 Selaginella moellendorffii HOM05D003926 ORTHO05D005273 0.0e+00 4289.2 4814 50.1
Eucgr.I02068 Eucalyptus grandis HOM05D003926 ORTHO05D005273 0.0e+00 4204.4 2626 81.5
Nitab4.5_0001339g0050 Nicotiana tabacum HOM05D003926 ORTHO05D005273 0.0e+00 4056.1 4484 50.9
Gohir.A07G178700 Gossypium hirsutum HOM05D003926 ORTHO05D005273 0.0e+00 4050.4 2535 81.0
Gohir.D07G186000 Gossypium hirsutum HOM05D003926 ORTHO05D005273 0.0e+00 4039.2 2535 80.9
vmacro05610 Vaccinium macrocarpon HOM05D003926 ORTHO05D005273 0.0e+00 3721.0 2423 78.5
CDE01G0304 Ceratophyllum demersum HOM05D003926 ORTHO05D005273 0.0e+00 3696.4 3357 58.0
Glyma.08G252650 Glycine max HOM05D003926 ORTHO05D005273 0.0e+00 3579.3 2304 79.5
Gohir.A07G179100 Gossypium hirsutum HOM05D003926 ORTHO05D005273 0.0e+00 3309.2 2986 58.9
Cpa.g.sc14.238 Carica papaya HOM05D003926 ORTHO05D005273 0.0e+00 3247.6 2063 81.0
Dinv33870 Davidia involucrata HOM05D003926 ORTHO05D005273 0.0e+00 3119.7 2245 72.9
Glyma.08G252600 Glycine max HOM05D003926 ORTHO05D005273 0.0e+00 3104.3 2759 58.2
CBR_g24086 Chara braunii HOM05D003926 ORTHO05D000048 0.0e+00 3083.9 6192 35.2
BcaC05g30340 Brassica carinata HOM05D003926 ORTHO05D005273 0.0e+00 3037.3 2040 76.2
SHI25822 Sapria himalayana HOM05D003926 ORTHO05D005273 0.0e+00 3032.3 2459 64.7
HPP92_020589 Vanilla planifolia HOM05D003926 ORTHO05D005273 0.0e+00 3019.2 2159 72.4
A05p45140 Brassica napus HOM05D003926 ORTHO05D005273 0.0e+00 2971.4 1932 78.2
A05p45150 Brassica napus HOM05D003926 ORTHO05D005273 0.0e+00 2929.8 2872 55.0
vmacro05611 Vaccinium macrocarpon HOM05D003926 ORTHO05D005273 0.0e+00 2699.5 2609 54.5
Dinv33869 Davidia involucrata HOM05D003926 ORTHO05D005273 0.0e+00 2654.0 2585 55.5
BcaC05g30341 Brassica carinata HOM05D003926 ORTHO05D005273 0.0e+00 2500.7 2709 51.9
Nitab4.5_0009887g0010 Nicotiana tabacum HOM05D003926 ORTHO05D005273 0.0e+00 2366.7 2433 51.9
PGSC0003DMG401001381 Solanum tuberosum HOM05D003926 ORTHO05D005273 0.0e+00 2256.5 1507 76.1
arahy.Tifrunner.gnm1.ann1.DT5ZWB Arachis hypogaea HOM05D003926 ORTHO05D005273 0.0e+00 2040.8 2062 53.4
SHI25820 Sapria himalayana HOM05D003926 ORTHO05D005273 0.0e+00 1999.9 2438 46.8
Gohir.A07G178901 Gossypium hirsutum HOM05D003926 ORTHO05D005273 0.0e+00 1866.7 1919 52.8
HPP92_020588 Vanilla planifolia HOM05D003926 ORTHO05D005273 0.0e+00 1764.6 2384 43.4
AagrBONN_evm.TU.Sc2ySwM_344.3761 Anthoceros agrestis HOM05D003926 ORTHO05D005273 0.0e+00 1634.8 2901 37.6
CDE01G0480 Ceratophyllum demersum HOM05D003926 ORTHO05D005273 0.0e+00 1449.5 1041 73.3
Rhsim05G0129500 Rhododendron simsii HOM05D003926 ORTHO05D005273 0.0e+00 1319.7 1728 45.3
FAN09G1503 Fragaria x ananassa HOM05D003926 ORTHO05D005273 0.0e+00 1289.2 1414 48.2
SMO361G0392 Selaginella moellendorffii HOM05D003926 ORTHO05D005273 0.0e+00 1287.7 1345 54.1
SMO199G0087 Selaginella moellendorffii HOM05D003926 ORTHO05D005273 0.0e+00 1236.5 1332 53.5
Atru.chr12.1304 Acer truncatum HOM05D003926 ORTHO05D005273 0.0e+00 1226.5 741 84.9
Psat4g186360 Pisum sativum HOM05D003926 ORTHO05D005273 0.0e+00 1106.7 873 66.3
Migut.H00583 Erythranthe guttata HOM05D003926 ORTHO05D005273 1.1e-267 929.5 655 72.8
Psat4g179640 Pisum sativum HOM05D003926 ORTHO05D005273 4.1e-238 831.2 648 67.4
MCO11G572 Micromonas commoda HOM05D003926 ORTHO05D005273 3.0e-228 798.5 4574 23.9
Rhsim05G0129300 Rhododendron simsii HOM05D003926 ORTHO05D005273 3.3e-203 715.3 535 69.9
Sabra16G0314500 Salix brachista HOM05D004145 ORTHO05D004879 3.0e-196 692.2 840 51.3
Peaxi162Scf00020g02344 Petunia axillaris HOM05D003926 ORTHO05D005273 3.4e-184 652.1 971 39.2
vmacro11260 Vaccinium macrocarpon HOM05D003926 ORTHO05D005273 5.3e-169 601.7 389 76.6
Sabra16G0314400 Salix brachista HOM05D004145 ORTHO05D004879 3.4e-115 422.9 829 38.2
Actinidia36271 Actinidia chinensis HOM05D003926 ORTHO05D005273 8.4e-106 391.7 261 72.8
Psat7g201760 Pisum sativum HOM05D003926 ORTHO05D005273 8.2e-85 322.0 280 61.1
PGSC0003DMG402001381 Solanum tuberosum HOM05D003926 ORTHO05D005273 1.8e-76 294.3 278 61.2
Psat1g100800 Pisum sativum HOM05D003926 ORTHO05D005273 3.0e-63 250.4 217 61.3
CSS0003920 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 3.3e-62 246.9 191 66.0
CSS0007096 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 3.7e-61 243.4 188 66.5
CSS0037899 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 1.1e-60 241.9 188 66.0
CSS0009757 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 3.5e-59 236.9 188 64.9
Psat7g201680 Pisum sativum HOM05D003926 ORTHO05D005273 3.5e-59 236.9 280 49.6
Psat6g077960 Pisum sativum HOM05D003926 ORTHO05D005273 5.5e-57 229.6 178 64.0
CDE01G0511 Ceratophyllum demersum HOM05D003926 ORTHO05D005273 2.7e-56 227.3 439 34.4
Oeu047260.2 Olea europaea HOM05D003926 ORTHO05D005273 1.1e-52 215.3 147 75.5
CSS0026086 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 2.2e-50 207.6 192 59.9
Psat3g106080 Pisum sativum HOM05D003926 ORTHO05D005273 3.6e-48 200.3 127 73.2
Rhsim10G0100000 Rhododendron simsii HOM05D003926 ORTHO05D005273 4.8e-45 189.9 331 42.0
A05p29520 Brassica napus HOM05D003926 ORTHO05D005273 3.2e-41 177.2 620 27.9
Psat2g086480 Pisum sativum HOM05D003926 ORTHO05D005273 5.2e-39 169.9 114 71.9
Psat4g170760 Pisum sativum HOM05D003926 ORTHO05D005273 6.8e-39 169.5 117 70.9
Sabra11G0092200 Salix brachista HOM05D003926 ORTHO05D005273 3.6e-32 147.1 242 42.6
Psat2g110320 Pisum sativum HOM05D003492 ORTHO05D005115 3.0e-31 144.1 133 57.9
A05p29570 Brassica napus HOM05D003926 ORTHO05D010327 1.3e-26 128.6 276 33.7
ATR0620G072 Amborella trichopoda HOM05D003059 ORTHO05D003414 7.3e-25 122.9 106 69.8
ATR0332G115 Amborella trichopoda HOM05D003926 ORTHO05D005273 7.5e-22 112.8 104 62.5
BcaC05g29898 Brassica carinata HOM05D003926 ORTHO05D005273 3.2e-20 107.5 120 53.3
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 5.4e-20 106.7 211 36.0
VMungo1383G2275 Vigna mungo HOM05D003926 ORTHO05D005273 7.0e-20 106.3 110 55.5
Eucgr.I02066 Eucalyptus grandis HOM05D003926 ORTHO05D018213 7.8e-19 102.8 119 47.9
arahy.Tifrunner.gnm1.ann1.8KUK4W Arachis hypogaea HOM05D003926 ORTHO05D005273 3.3e-17 97.4 128 44.5
Cpa.g.sc3603.1 Carica papaya HOM05D003926 ORTHO05D018213 5.6e-17 96.7 119 49.6
COL.COLO4_10661 Corchorus olitorius HOM05D003926 ORTHO05D018213 6.8e-15 89.7 123 44.7
Hma1.2p1_0587F.1_g184120 Hydrangea macrophylla HOM05D003926 ORTHO05D005273 8.9e-15 89.4 53 77.4
GSVIVG01005908001 Vitis vinifera HOM05D003926 ORTHO05D005273 1.2e-14 89.0 58 75.9
Actinidia14026 Actinidia chinensis HOM05D003926 ORTHO05D018213 1.5e-14 88.6 120 41.7
CAN.G8.6 Capsicum annuum HOM05D003926 ORTHO05D010611 4.4e-14 87.0 193 32.6
Nn1g06304 Nelumbo nucifera HOM05D003926 ORTHO05D018213 7.5e-14 86.3 121 42.1
Sp7g04320 Schrenkiella parvula HOM05D003926 ORTHO05D005273 1.7e-13 85.1 75 52.0
QL10p058201 Quercus lobata HOM05D001813 ORTHO05D008124 2.2e-13 84.7 123 43.1
Actinidia36270 Actinidia chinensis HOM05D003926 ORTHO05D038129 6.4e-13 83.2 276 25.7
CDE01G0142 Ceratophyllum demersum HOM05D003926 ORTHO05D018213 2.4e-12 81.3 139 38.1
ATR0564G481 Amborella trichopoda HOM05D000537 ORTHO05D000415 3.0e-10 74.3 65 52.3
ATR0585G095 Amborella trichopoda HOM05D003926 ORTHO05D005273 3.3e-09 70.9 55 58.2
Dinv36991 Davidia involucrata HOM05D003926 ORTHO05D038129 4.3e-09 70.5 55 58.2
Psat3g105800 Pisum sativum HOM05D000129 ORTHO05D007829 6.2e-08 66.6 102 41.2
Psat7g160960 Pisum sativum HOM05D001399 ORTHO05D002785 8.1e-08 66.2 197 25.9
SHI25819 Sapria himalayana HOM05D000105 ORTHO05D000023 8.1e-08 66.2 126 34.9
Psat3g091240 Pisum sativum HOM05D000942 ORTHO05D000918 2.3e-07 64.7 72 51.4
Psat7g240480 Pisum sativum HOM05D000029 ORTHO05D037355 3.1e-07 64.3 47 63.8
Pp3c22_5030 Physcomitrium patens HOM05D000005 ORTHO05D000239 2.6e-06 61.2 73 38.4
Psat3g160120 Pisum sativum HOM05D003926 ORTHO05D005273 2.6e-06 61.2 60 51.7
Pp3c10_21680 Physcomitrium patens HOM05D000005 ORTHO05D000239 9.9e-06 59.3 67 37.3


User provided reference genes

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