Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G0380 Punica granatum HOM05D003727 ORTHO05D004731 5.6e-228 793.9 388 100.0
Thecc.04G312500 Theobroma cacao HOM05D003727 ORTHO05D004731 9.0e-194 680.2 386 86.0
Duzib151G0200 Durio zibethinus HOM05D003727 ORTHO05D004731 2.0e-193 679.1 386 86.3
Gohir.A01G036300 Gossypium hirsutum HOM05D003727 ORTHO05D004731 7.6e-193 677.2 386 86.3
Gohir.D01G023600 Gossypium hirsutum HOM05D003727 ORTHO05D004731 6.5e-192 674.1 386 86.3
Gorai.002G032100 Gossypium raimondii HOM05D003727 ORTHO05D004731 8.4e-192 673.7 386 86.0
arahy.Tifrunner.gnm1.ann1.EP383Y Arachis hypogaea HOM05D003727 ORTHO05D004731 3.5e-190 668.3 386 84.5
Cfa015726 Carpinus fangiana HOM05D003727 ORTHO05D004731 1.0e-189 666.8 386 85.2
QL06p014168 Quercus lobata HOM05D003727 ORTHO05D004731 1.8e-189 666.0 387 84.2
arahy.Tifrunner.gnm1.ann1.BN91E6 Arachis hypogaea HOM05D003727 ORTHO05D004731 2.3e-189 665.6 410 80.0
CiPaw.01G129700 Carya illinoinensis HOM05D003727 ORTHO05D004731 3.0e-189 665.2 386 85.8
Manes.03G211600 Manihot esculenta HOM05D003727 ORTHO05D004731 1.9e-188 662.5 386 83.9
FvH4_4g21480 Fragaria vesca HOM05D003727 ORTHO05D004731 7.4e-188 660.6 384 84.9
FAN12G0484 Fragaria x ananassa HOM05D003727 ORTHO05D004731 7.4e-188 660.6 384 84.9
GSVIVG01017684001 Vitis vinifera HOM05D003727 ORTHO05D004731 7.4e-188 660.6 384 84.4
RcHm_v2.0_Chr4g0427421 Rosa chinensis HOM05D003727 ORTHO05D004731 9.7e-188 660.2 384 84.9
Haze_00772 Corylus avellana HOM05D003727 ORTHO05D004731 1.3e-187 659.8 393 84.0
Ciclev10005215m.g Citrus clementina HOM05D003727 ORTHO05D004731 1.6e-187 659.4 386 84.7
Cpa.g.sc146.27 Carica papaya HOM05D003727 ORTHO05D004731 3.7e-187 658.3 386 84.7
Prupe.1G105800 Prunus persica HOM05D003727 ORTHO05D004731 3.7e-187 658.3 384 84.1
Glyma.09G079000 Glycine max HOM05D003727 ORTHO05D004731 8.2e-187 657.1 386 83.4
THA.LOC104818862 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 8.2e-187 657.1 386 83.4
Thhalv10020969m.g Eutrema salsugineum HOM05D003727 ORTHO05D004731 1.4e-186 656.4 384 83.6
VMungo1309G1883 Vigna mungo HOM05D003727 ORTHO05D004731 1.4e-186 656.4 386 83.7
FAN17G0291 Fragaria x ananassa HOM05D003727 ORTHO05D004731 2.4e-186 655.6 384 84.4
Glyma.15G188500 Glycine max HOM05D003727 ORTHO05D004731 2.4e-186 655.6 386 83.4
Lj6g0008986 Lotus japonicus HOM05D003727 ORTHO05D004731 3.1e-186 655.2 386 82.6
Phvul.009G219900 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 1.2e-185 653.3 386 83.4
THA.LOC104798546 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 1.5e-185 652.9 386 83.2
THA.LOC104802717 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 1.5e-185 652.9 386 83.2
Lalb_Chr23g0276061 Lupinus albus HOM05D003727 ORTHO05D004731 2.0e-185 652.5 386 82.9
Sabra10G0001600 Salix brachista HOM05D003727 ORTHO05D004731 2.6e-185 652.1 386 83.9
Sp3g05430 Schrenkiella parvula HOM05D003727 ORTHO05D004731 4.5e-185 651.4 384 82.8
Gohir.A10G176400 Gossypium hirsutum HOM05D003727 ORTHO05D004731 5.9e-185 651.0 386 82.9
THA.LOC104827107 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 7.7e-185 650.6 388 83.5
Gohir.D10G183100 Gossypium hirsutum HOM05D003727 ORTHO05D004731 1.0e-184 650.2 386 82.9
Gorai.011G205200 Gossypium raimondii HOM05D003727 ORTHO05D004731 1.0e-184 650.2 386 82.9
BraA03t12649Z Brassica rapa HOM05D003727 ORTHO05D004731 1.3e-184 649.8 384 83.9
ClCG04G007480 Citrullus lanatus HOM05D003727 ORTHO05D004731 1.3e-184 649.8 387 83.5
TWI73G0221 Tripterygium wilfordii HOM05D003727 ORTHO05D004731 1.3e-184 649.8 384 82.3
C03p42180 Brassica napus HOM05D003727 ORTHO05D004731 1.7e-184 649.4 384 83.9
Aa31LG5G17020 Aethionema arabicum HOM05D003727 ORTHO05D004731 2.2e-184 649.0 386 82.1
CsaV3_4G025780 Cucumis sativus L. HOM05D003727 ORTHO05D004731 2.9e-184 648.7 387 83.2
CANSAT78G0237 Cannabis sativa HOM05D003727 ORTHO05D004731 5.0e-184 647.9 380 83.4
BolC3t16499H Brassica oleracea HOM05D003727 ORTHO05D004731 6.5e-184 647.5 384 83.6
MSTRG.21742 Avicennia marina HOM05D003727 ORTHO05D004731 1.1e-183 646.7 386 82.9
Potri.010G002000 Populus trichocarpa HOM05D003727 ORTHO05D004731 1.4e-183 646.4 386 82.9
MD13G1140800 Malus domestica HOM05D003727 ORTHO05D004731 1.9e-183 646.0 384 83.3
Ca_07250_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 1.6e-182 642.9 378 82.8
Eucgr.H04122 Eucalyptus grandis HOM05D003727 ORTHO05D004731 2.7e-182 642.1 374 85.8
COL.COLO4_34520 Corchorus olitorius HOM05D003727 ORTHO05D004731 4.6e-182 641.3 379 83.6
Rhsim04G0248100 Rhododendron simsii HOM05D003727 ORTHO05D004731 6.1e-182 641.0 388 83.0
Solyc01g057210.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 6.1e-182 641.0 387 81.4
Medtr7g024460 Medicago truncatula HOM05D003727 ORTHO05D004731 7.9e-182 640.6 378 82.3
CSS0027704 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 1.0e-181 640.2 387 82.4
Lalb_Chr11g0073551 Lupinus albus HOM05D003727 ORTHO05D004731 1.0e-181 640.2 386 81.6
Sed0005057 Sechium edule HOM05D003727 ORTHO05D004731 1.0e-181 640.2 387 81.7
TPR.G15491 Trifolium pratense HOM05D003727 ORTHO05D004731 1.0e-181 640.2 378 82.3
DCAR_023405 Daucus carota HOM05D003727 ORTHO05D004731 1.4e-181 639.8 384 81.5
PGSC0003DMG400013068 Solanum tuberosum HOM05D003727 ORTHO05D004731 1.8e-181 639.4 387 81.4
Sopen01g021750 Solanum pennellii HOM05D003727 ORTHO05D004731 3.0e-181 638.6 387 81.1
Psat3g179960 Pisum sativum HOM05D003727 ORTHO05D004731 3.9e-181 638.3 378 83.3
Carub.0003s0594 Capsella rubella HOM05D003727 ORTHO05D004731 6.7e-181 637.5 384 81.8
Oeu022704.1 Olea europaea HOM05D003727 ORTHO05D004731 6.7e-181 637.5 384 82.6
AT3G06483 Arabidopsis thaliana HOM05D003727 ORTHO05D004731 1.1e-180 636.7 384 81.2
ClCG05G006850 Citrullus lanatus HOM05D003727 ORTHO05D004731 1.5e-180 636.3 387 82.2
Phvul.009G220000 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 2.5e-180 635.6 374 82.6
CARHR081010 Cardamine hirsuta HOM05D003727 ORTHO05D004731 3.3e-180 635.2 384 81.5
CsaV3_3G015500 Cucumis sativus L. HOM05D003727 ORTHO05D004731 3.3e-180 635.2 387 81.7
HanXRQChr07g0194351 Helianthus annuus HOM05D003727 ORTHO05D004731 3.3e-180 635.2 386 80.1
BcaC05g30021 Brassica carinata HOM05D003727 ORTHO05D004731 7.4e-180 634.0 376 81.9
PSO357G0471 Papaver somniferum HOM05D003727 ORTHO05D004731 1.3e-179 633.3 386 81.1
Hund12253 Selenicereus undatus HOM05D003727 ORTHO05D004731 2.2e-179 632.5 384 80.5
Migut.N00003 Erythranthe guttata HOM05D003727 ORTHO05D004731 2.8e-179 632.1 386 81.6
A03p34710 Brassica napus HOM05D003727 ORTHO05D004731 3.7e-179 631.7 415 77.3
Nitab4.5_0001334g0060 Nicotiana tabacum HOM05D003727 ORTHO05D004731 3.7e-179 631.7 398 79.4
Ca_02357_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 4.8e-179 631.3 386 81.1
CAN.G179.19 Capsicum annuum HOM05D003727 ORTHO05D004731 6.3e-179 630.9 387 81.4
Aqoxy5G02791 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 8.2e-179 630.6 386 81.1
BcaC05g29821 Brassica carinata HOM05D003727 ORTHO05D004731 8.2e-179 630.6 376 81.4
A05p41540 Brassica napus HOM05D003727 ORTHO05D004731 8.2e-179 630.6 376 81.4
C05p60740 Brassica napus HOM05D003727 ORTHO05D004731 8.2e-179 630.6 376 81.4
BolC5t34734H Brassica oleracea HOM05D003727 ORTHO05D004731 8.2e-179 630.6 376 81.4
BraA05t22875Z Brassica rapa HOM05D003727 ORTHO05D004731 8.2e-179 630.6 376 81.4
Nitab4.5_0004046g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 1.8e-178 629.4 387 80.9
Peaxi162Scf00126g01030 Petunia axillaris HOM05D003727 ORTHO05D004731 4.1e-178 628.2 387 80.6
Cc03_g00160 Coffea canephora HOM05D003727 ORTHO05D004731 9.1e-178 627.1 386 81.3
Aqoxy7G02168 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 2.0e-177 625.9 384 80.7
Hma1.2p1_2234F.1_g317700 Hydrangea macrophylla HOM05D003727 ORTHO05D004731 2.0e-177 625.9 386 80.1
PSO170G4280 Papaver somniferum HOM05D003727 ORTHO05D004731 2.0e-177 625.9 386 80.3
TPR.G39591 Trifolium pratense HOM05D003727 ORTHO05D004731 2.6e-177 625.5 386 80.3
TAR365G0780 Trochodendron aralioides HOM05D003727 ORTHO05D004731 2.6e-177 625.5 384 80.2
Medtr2g045490 Medicago truncatula HOM05D003727 ORTHO05D004731 3.4e-177 625.2 386 79.8
Sed0027316 Sechium edule HOM05D003727 ORTHO05D004731 5.9e-177 624.4 385 79.5
Lsat_1_v5_gn_6_70560 Lactuca sativa HOM05D003727 ORTHO05D004731 1.3e-176 623.2 386 79.5
Atru.chr4.3143 Acer truncatum HOM05D003727 ORTHO05D004731 1.1e-175 620.2 377 81.4
Sc25g0002190 Simmondsia chinensis HOM05D003727 ORTHO05D004731 1.9e-175 619.4 413 76.3
EL10Ac3g06260 Beta vulgaris HOM05D003727 ORTHO05D004731 6.1e-174 614.4 384 79.4
CSS0023101 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 1.0e-173 613.6 391 78.5
CiPaw.02G069500 Carya illinoinensis HOM05D003727 ORTHO05D004731 1.8e-173 612.8 366 82.5
Actinidia18506 Actinidia chinensis HOM05D003727 ORTHO05D004731 1.7e-171 606.3 369 81.8
Nitab4.5_0003998g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 1.4e-170 603.2 388 78.4
HanXRQChr05g0149271 Helianthus annuus HOM05D003727 ORTHO05D004731 2.4e-170 602.4 384 75.5
unitig_699.g19980 Utricularia gibba HOM05D003727 ORTHO05D004731 2.4e-170 602.4 386 76.7
MBI18_g09643_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 9.1e-170 600.5 386 77.7
CAN.G484.91 Capsicum annuum HOM05D003727 ORTHO05D004731 3.8e-168 595.1 389 76.6
Nn3g21906 Nelumbo nucifera HOM05D003727 ORTHO05D004731 3.2e-167 592.0 388 77.6
Peaxi162Scf00668g00119 Petunia axillaris HOM05D003727 ORTHO05D004731 7.2e-167 590.9 388 76.8
vmacro08010 Vaccinium macrocarpon HOM05D003727 ORTHO05D004731 9.4e-167 590.5 386 78.5
GSVIVG01031319001 Vitis vinifera HOM05D003727 ORTHO05D004731 9.4e-167 590.5 386 76.4
ECA233G2414 Erigeron canadensis HOM05D003727 ORTHO05D004731 4.7e-166 588.2 386 76.4
Lj3A840G128 Lonicera japonica HOM05D003727 ORTHO05D004731 4.7e-166 588.2 385 76.4
Lj6A700T83 Lonicera japonica HOM05D003727 ORTHO05D004731 6.1e-166 587.8 384 75.3
Actinidia00296 Actinidia chinensis HOM05D003727 ORTHO05D004731 1.0e-165 587.0 386 78.8
Glyma.17G040500 Glycine max HOM05D003727 ORTHO05D004731 1.0e-165 587.0 377 77.7
Psat1g017520 Pisum sativum HOM05D003727 ORTHO05D004731 3.0e-165 585.5 369 78.3
SalBow8G0722 Salvia bowleyana HOM05D003727 ORTHO05D004731 6.7e-165 584.3 375 78.4
SGA_v2.0_scaffold157G37383 Striga asiatica HOM05D003727 ORTHO05D004731 5.7e-164 581.3 450 67.8
VMungo1215G3329 Vigna mungo HOM05D003727 ORTHO05D004731 4.8e-163 578.2 388 75.8
PSO210G4254 Papaver somniferum HOM05D003727 ORTHO05D004731 6.3e-163 577.8 388 73.2
PSO761G0171 Papaver somniferum HOM05D003727 ORTHO05D004731 8.2e-163 577.4 388 73.5
ATR0796G219 Amborella trichopoda HOM05D003727 ORTHO05D004731 7.0e-162 574.3 386 75.1
MBI19_g32733_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 9.1e-162 573.9 386 73.8
arahy.Tifrunner.gnm1.ann1.E3SS24 Arachis hypogaea HOM05D003727 ORTHO05D004731 4.5e-161 571.6 377 73.7
AUR62002558 Chenopodium quinoa HOM05D003727 ORTHO05D004731 4.5e-161 571.6 367 78.5
HPP92_001184 Vanilla planifolia HOM05D003727 ORTHO05D004731 1.7e-160 569.7 382 74.9
Solyc12g098930.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 1.5e-159 566.6 384 74.0
CDE02G0044 Ceratophyllum demersum HOM05D003727 ORTHO05D002799 2.5e-159 565.8 370 74.6
Sopen12g033680 Solanum pennellii HOM05D003727 ORTHO05D004731 3.2e-159 565.5 384 74.0
Nitab4.5_0000895g0180 Nicotiana tabacum HOM05D003727 ORTHO05D004731 9.4e-159 563.9 368 76.9
Zm00001eb328730 Zea mays HOM05D003727 ORTHO05D004731 6.1e-158 561.2 380 73.9
Os07g0637300 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 2.3e-157 559.3 379 73.6
PGSC0003DMG400004685 Solanum tuberosum HOM05D003727 ORTHO05D004731 1.3e-155 553.5 384 72.4
SGA_v2.0_scaffold157G37388 Striga asiatica HOM05D003727 ORTHO05D004731 5.3e-154 548.1 390 72.1
Zm00001eb018000 Zea mays HOM05D003727 ORTHO05D004731 1.7e-152 543.1 379 69.9
SHI00051 Sapria himalayana HOM05D003727 ORTHO05D004731 1.1e-151 540.4 394 71.6
Os03g0370000 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 2.7e-150 535.8 379 69.9
SMO115G0066 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 2.7e-145 519.2 384 64.8
CDE01G0062 Ceratophyllum demersum HOM05D003727 ORTHO05D004731 1.0e-144 517.3 379 68.1
AagrBONN_evm.TU.Sc2ySwM_362.1196 Anthoceros agrestis HOM05D003727 ORTHO05D004731 1.3e-144 516.9 384 64.6
Lj4g0016505 Lotus japonicus HOM05D003727 ORTHO05D004731 4.2e-143 511.9 392 67.1
Pp3c15_8270 Physcomitrium patens HOM05D003727 ORTHO05D004731 4.2e-143 511.9 385 64.9
Pp3c9_2880 Physcomitrium patens HOM05D003727 ORTHO05D004731 4.2e-143 511.9 386 64.5
Mapoly0183s0013 Marchantia polymorpha HOM05D003727 ORTHO05D004731 9.5e-143 510.8 385 64.7
Oeu037626.1 Olea europaea HOM05D003727 ORTHO05D004731 8.3e-139 497.7 290 84.1
SEGI_06820 Sequoiadendron giganteum HOM05D003727 ORTHO05D004731 1.2e-137 493.8 374 64.4
ECA246G0694 Erigeron canadensis HOM05D003727 ORTHO05D004731 1.3e-136 490.3 340 73.5
CBR_g238 Chara braunii HOM05D003727 ORTHO05D004731 1.7e-136 490.0 386 62.7
AL3G17510 Arabidopsis lyrata HOM05D003727 ORTHO05D004731 5.0e-136 488.4 276 86.6
Nn4g25394 Nelumbo nucifera HOM05D003727 ORTHO05D004731 3.3e-135 485.7 292 79.8
Dinv29512 Davidia involucrata HOM05D003727 ORTHO05D004731 9.5e-135 484.2 293 80.5
Cre05.g241750 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 1.0e-133 480.7 381 61.4
MELO3C006749.2 Cucumis melo HOM05D003727 ORTHO05D004731 1.5e-132 476.9 296 80.7
TAR633G1110 Trochodendron aralioides HOM05D003727 ORTHO05D004731 1.5e-132 476.9 361 69.8
MELO3C003205.2 Cucumis melo HOM05D003727 ORTHO05D004731 4.4e-132 475.3 297 80.8
unitig_8.g2888 Utricularia gibba HOM05D003727 ORTHO05D004731 1.7e-131 473.4 372 64.0
SGA_v2.0_scaffold64G22028 Striga asiatica HOM05D003727 ORTHO05D004731 1.9e-130 469.9 295 80.7
unitig_747.g21103 Utricularia gibba HOM05D003727 ORTHO05D004731 1.4e-125 453.8 342 67.8
Glyma.13G119800 Glycine max HOM05D003727 ORTHO05D004731 8.3e-123 444.5 273 80.2
MCO15G342 Micromonas commoda HOM05D003727 ORTHO05D004731 1.3e-120 437.2 401 55.9
Dinv18024 Davidia involucrata HOM05D003727 ORTHO05D004731 5.1e-120 435.3 241 87.6
SMO367G0119 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 3.6e-118 429.1 386 55.2
arahy.Tifrunner.gnm1.ann1.L2TMJG Arachis hypogaea HOM05D003727 ORTHO05D004731 2.6e-116 422.9 295 69.8
Zm00001eb394190 Zea mays HOM05D003727 ORTHO05D004731 1.1e-109 401.0 288 67.7
PRCOL_00006564 Prasinoderma coloniale HOM05D003727 ORTHO05D004731 5.2e-109 398.7 417 49.9
Cre06.g278451 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 3.2e-106 389.4 386 52.1
FAN07G0809 Fragaria x ananassa HOM05D003727 ORTHO05D004731 1.4e-93 347.4 212 81.1
Cc00_g15630 Coffea canephora HOM05D003727 ORTHO05D004731 4.5e-92 342.4 273 65.9
CSS0050306 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 4.2e-90 335.9 197 80.7
AUR62029978 Chenopodium quinoa HOM05D003727 ORTHO05D004731 1.0e-88 331.3 222 74.3
MD16G1136800 Malus domestica HOM05D003727 ORTHO05D004731 1.3e-86 324.3 181 86.7
BcaC08g45280 Brassica carinata HOM05D003727 ORTHO05D004731 3.9e-72 276.2 185 76.8
vmacro06806 Vaccinium macrocarpon HOM05D003727 ORTHO05D426773 1.1e-55 221.5 268 51.1
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 5.3e-45 186.0 391 30.7
Glyma.14G127500 Glycine max HOM05D003727 ORTHO05D004731 3.8e-43 179.9 115 80.0
Zm00001eb392210 Zea mays HOM05D003727 ORTHO05D444991 1.6e-41 174.5 120 72.5
Cre06.g252300 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D034196 8.0e-41 172.2 457 26.9
Zm00001eb394790 Zea mays HOM05D003727 ORTHO05D441672 8.0e-41 172.2 148 64.2
Zm00001eb400710 Zea mays HOM05D003727 ORTHO05D445430 4.0e-40 169.9 120 70.8
Cfa023761 Carpinus fangiana HOM05D003727 ORTHO05D034196 2.2e-38 164.1 404 26.2
Lsat_1_v5_gn_5_23680 Lactuca sativa HOM05D003727 ORTHO05D231959 2.9e-35 153.7 115 64.3
Cfa027032 Carpinus fangiana HOM05D003727 ORTHO05D122316 1.4e-32 144.8 297 29.3
DCAR_023404 Daucus carota HOM05D002877 ORTHO05D003248 1.3e-30 138.3 89 74.2
vmacro06805 Vaccinium macrocarpon HOM05D003727 ORTHO05D426993 6.6e-11 72.8 198 33.3
VMungo0251G3273 Vigna mungo HOM05D003727 ORTHO05D000132 7.3e-10 69.3 49 75.5


User provided reference genes

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