Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 1.5e-115 419.5 209 100.0
Nn4g23269 Nelumbo nucifera HOM05D004214 ORTHO05D004963 7.5e-62 241.1 148 76.4
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 7.5e-62 241.1 141 78.7
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 4.9e-61 238.4 202 62.4
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 4.9e-61 238.4 145 75.2
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 4.1e-60 235.3 141 78.0
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 9.2e-60 234.2 204 59.8
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.3e-58 230.3 137 75.9
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.3e-58 230.3 137 75.9
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 2.3e-58 229.6 147 73.5
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 3.9e-58 228.8 161 66.5
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 6.6e-58 228.0 148 72.3
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 8.6e-58 227.6 167 65.3
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 2.5e-57 226.1 171 63.7
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 2.5e-57 226.1 149 67.8
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 3.3e-57 225.7 197 58.9
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 2.1e-56 223.0 155 67.7
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 2.1e-56 223.0 211 54.0
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 2.1e-56 223.0 155 69.7
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 2.1e-56 223.0 135 76.3
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 2.8e-56 222.6 151 73.5
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 2.8e-56 222.6 151 73.5
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 3.6e-56 222.2 173 63.6
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 4.7e-56 221.9 149 70.5
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 4.7e-56 221.9 149 70.5
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 6.2e-56 221.5 189 60.3
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 1.1e-55 220.7 136 76.5
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 3.1e-55 219.2 191 60.2
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 5.2e-55 218.4 146 71.2
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 3.4e-54 215.7 203 56.2
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 5.8e-54 214.9 200 55.0
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 7.5e-54 214.5 149 68.5
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 9.9e-54 214.2 171 60.8
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 9.9e-54 214.2 153 68.0
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 2.2e-53 213.0 203 56.2
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 2.9e-53 212.6 187 55.1
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 8.3e-53 211.1 142 66.9
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 1.1e-52 210.7 198 52.5
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 1.4e-52 210.3 152 63.8
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 4.1e-52 208.8 142 66.9
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 4.1e-52 208.8 135 72.6
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 5.4e-52 208.4 156 63.5
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 5.4e-52 208.4 138 70.3
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 7.1e-52 208.0 136 67.6
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 1.2e-51 207.2 135 73.3
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 7.8e-51 204.5 163 60.7
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 1.0e-50 204.1 160 60.0
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 1.7e-50 203.4 202 49.5
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 2.3e-50 203.0 178 57.9
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 3.0e-50 202.6 136 70.6
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 3.0e-50 202.6 141 64.5
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 5.1e-50 201.8 155 62.6
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 5.1e-50 201.8 141 64.5
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 6.6e-50 201.4 140 68.6
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 8.6e-50 201.1 141 64.5
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 8.6e-50 201.1 141 64.5
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 1.1e-49 200.7 145 64.8
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 1.5e-49 200.3 141 63.8
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 1.5e-49 200.3 141 64.5
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 2.5e-49 199.5 154 61.0
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 3.3e-49 199.1 137 65.7
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 7.3e-49 198.0 141 63.1
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 9.5e-49 197.6 141 64.5
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 1.6e-48 196.8 137 65.7
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 1.6e-48 196.8 137 65.7
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 1.6e-48 196.8 137 65.7
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 3.6e-48 195.7 137 65.0
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 1.1e-47 194.1 151 61.6
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 1.8e-47 193.4 137 65.0
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 1.8e-47 193.4 137 65.0
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 5.2e-47 191.8 151 58.9
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 2.6e-46 189.5 151 58.9
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 8.4e-45 184.5 141 61.0
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 8.4e-45 184.5 141 61.0
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 1.9e-44 183.3 151 57.6
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 1.9e-44 183.3 172 58.1
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 2.4e-44 183.0 192 50.5
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 1.6e-43 180.3 117 68.4
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 3.9e-42 175.6 124 66.1
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 5.1e-42 175.3 146 60.3
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 6.6e-42 174.9 202 46.0
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.5e-41 173.7 160 54.4
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 3.6e-40 169.1 138 59.4
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 1.4e-39 167.2 192 46.9
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 2.4e-39 166.4 191 45.0
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 2.4e-39 166.4 161 51.6
Lj2g0001860 Lotus japonicus HOM05D004214 ORTHO05D004963 1.2e-38 164.1 156 51.9
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 4.4e-38 162.2 171 49.7
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 7.6e-38 161.4 157 49.7
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 7.6e-38 161.4 185 46.5
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 9.9e-38 161.0 138 58.0
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 1.7e-37 160.2 157 51.0
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.7e-37 160.2 135 58.5
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 2.2e-37 159.8 137 57.7
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 2.9e-37 159.5 137 56.9
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 8.4e-37 157.9 157 49.0
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 1.4e-36 157.1 101 68.3
Gohir.A07G206700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 1.9e-36 156.8 161 48.4
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 5.4e-36 155.2 184 44.6
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 6.6e-34 148.3 176 46.6
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 8.7e-34 147.9 142 52.1
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 1.9e-33 146.7 158 47.5
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 3.3e-33 146.0 178 42.7
Glyma.19G025600 Glycine max HOM05D004214 ORTHO05D004963 4.3e-33 145.6 171 46.2
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 7.3e-33 144.8 216 39.4
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 1.3e-32 144.1 158 46.8
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 1.6e-32 143.7 149 52.3
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 1.6e-32 143.7 213 41.3
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 2.1e-32 143.3 139 55.4
FvH4_6g48000 Fragaria vesca HOM05D004214 ORTHO05D004963 4.8e-32 142.1 138 49.3
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 1.1e-31 141.0 151 47.7
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 1.4e-31 140.6 158 44.9
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 2.4e-31 139.8 155 45.2
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 3.1e-31 139.4 89 73.0
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 3.1e-31 139.4 93 71.0
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 4.0e-31 139.0 138 48.6
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 5.3e-31 138.7 142 50.0
ClCG09G017980 Citrullus lanatus HOM05D004214 ORTHO05D004963 6.9e-31 138.3 127 50.4
Os07g0633000 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 1.5e-30 137.1 140 52.1
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 2.0e-30 136.7 144 49.3
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 3.4e-30 136.0 139 45.3
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 5.8e-30 135.2 138 46.4
PGR083G1063 Punica granatum HOM05D004214 ORTHO05D004963 5.8e-30 135.2 136 48.5
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 1.7e-29 133.7 177 41.8
Zm00001eb328430 Zea mays HOM05D004214 ORTHO05D004963 1.1e-28 131.0 139 47.5
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 1.9e-28 130.2 144 45.8
Mapoly0033s0115 Marchantia polymorpha HOM05D004214 ORTHO05D004963 4.2e-28 129.0 149 43.6
FAN02G2928 Fragaria x ananassa HOM05D004214 ORTHO05D004963 5.4e-28 128.6 158 41.8
FvH4_6g48001 Fragaria vesca HOM05D004214 ORTHO05D004963 7.1e-28 128.3 179 39.1
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 9.3e-28 127.9 86 69.8
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 2.1e-27 126.7 86 69.8
CBR_g51334 Chara braunii HOM05D004214 ORTHO05D004963 2.7e-27 126.3 142 47.9
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 3.5e-27 125.9 155 42.6
FAN14G3700 Fragaria x ananassa HOM05D004214 ORTHO05D004963 6.0e-27 125.2 179 38.5
Gohir.D11G074550 Gossypium hirsutum HOM05D004214 ORTHO05D004963 6.0e-27 125.2 132 46.2
Gorai.007G080000 Gossypium raimondii HOM05D004214 ORTHO05D004963 7.9e-27 124.8 132 46.2
CsaV3_5G038250 Cucumis sativus L. HOM05D004214 ORTHO05D004963 1.0e-26 124.4 128 47.7
MELO3C033594.2 Cucumis melo HOM05D004214 ORTHO05D004963 6.7e-26 121.7 128 46.1
BolC4t26178H Brassica oleracea HOM05D004214 ORTHO05D004963 2.5e-25 119.8 122 48.4
Ca_04848_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 9.6e-25 117.9 134 42.5
RcHm_v2.0_Chr2g0167241 Rosa chinensis HOM05D004214 ORTHO05D004963 9.6e-25 117.9 143 43.4
Lj2g0019349 Lotus japonicus HOM05D004214 ORTHO05D004963 2.8e-24 116.3 133 42.9
Phvul.004G029700 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 4.8e-24 115.5 142 37.3
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.1e-23 114.4 138 43.5
ClCG10G015310 Citrullus lanatus HOM05D004214 ORTHO05D004963 2.4e-23 113.2 138 42.8
arahy.Tifrunner.gnm1.ann1.SU00NT Arachis hypogaea HOM05D004214 ORTHO05D004963 6.9e-23 111.7 106 50.9
Psat1g071840 Pisum sativum HOM05D004214 ORTHO05D004963 2.6e-22 109.8 134 40.3
TPR.G8805 Trifolium pratense HOM05D004214 ORTHO05D004963 3.2e-20 102.8 146 40.4
Glyma.13G061800 Glycine max HOM05D004214 ORTHO05D004963 5.5e-20 102.1 100 46.0
MD09G1055400 Malus domestica HOM05D004214 ORTHO05D004963 6.7e-18 95.1 98 45.9
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 1.1e-17 94.4 177 33.3
Lj3A350G16 Lonicera japonica HOM05D004214 ORTHO05D004963 6.2e-16 88.6 138 43.5
Sabra17G0077200 Salix brachista HOM05D004214 ORTHO05D004963 2.6e-14 83.2 56 66.1
Nitab4.5_0001591g0160 Nicotiana tabacum HOM05D004214 ORTHO05D004963 3.4e-14 82.8 160 34.4
PRCOL_00004285 Prasinoderma coloniale HOM05D004214 ORTHO05D004963 2.5e-12 76.6 128 35.2
MELO3C009848.2 Cucumis melo HOM05D004214 ORTHO05D004963 3.2e-12 76.3 136 33.1
Aa31LG9G16510 Aethionema arabicum HOM05D004214 ORTHO05D004963 5.5e-12 75.5 49 67.3
CsaV3_3G041190 Cucumis sativus L. HOM05D004214 ORTHO05D004963 5.5e-12 75.5 138 33.3
BolC9t55376H Brassica oleracea HOM05D004214 ORTHO05D004963 1.8e-10 70.5 66 48.5
CBR_g46605 Chara braunii HOM05D004214 ORTHO05D004963 6.3e-08 62.0 91 40.7
Os10g0580600 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 4.1e-07 59.3 43 62.8


User provided reference genes

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