Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G0249 Punica granatum HOM05D008124 ORTHO05D004072 1.2e-182 643.3 367 100.0
CANSAT64G0620 Cannabis sativa HOM05D008124 ORTHO05D004072 2.3e-64 250.4 290 51.0
Eucgr.K01332 Eucalyptus grandis HOM05D008124 ORTHO05D004072 3.0e-64 250.0 311 46.9
GSVIVG01018616001 Vitis vinifera HOM05D008124 ORTHO05D004072 6.9e-61 238.8 309 46.9
Rhsim07G0073400 Rhododendron simsii HOM05D008124 ORTHO05D004072 1.2e-60 238.0 295 47.1
TAR627G0754 Trochodendron aralioides HOM05D008124 ORTHO05D004072 7.1e-58 228.8 300 45.7
Prupe.3G190200 Prunus persica HOM05D008124 ORTHO05D004072 2.7e-57 226.9 313 45.0
Sed0004202 Sechium edule HOM05D008124 ORTHO05D004072 6.0e-57 225.7 307 43.6
MD17G1125500 Malus domestica HOM05D008124 ORTHO05D004072 6.7e-56 222.2 329 44.4
RcHm_v2.0_Chr2g0154211 Rosa chinensis HOM05D008124 ORTHO05D004072 1.5e-55 221.1 331 44.7
FAN02G4088 Fragaria x ananassa HOM05D008124 ORTHO05D004072 1.1e-53 214.9 174 60.9
FAN14G4038 Fragaria x ananassa HOM05D000027 ORTHO05D004072 2.4e-53 213.8 346 41.6
CAN.G134.65 Capsicum annuum HOM05D008124 ORTHO05D004072 3.1e-53 213.4 197 53.8
TWI60G0051 Tripterygium wilfordii HOM05D008124 ORTHO05D004072 6.9e-53 212.2 171 60.2
Manes.09G074700 Manihot esculenta HOM05D008124 ORTHO05D004072 1.2e-52 211.5 316 41.1
FvH4_6g39844 Fragaria vesca HOM05D008124 ORTHO05D004072 1.5e-52 211.1 357 41.7
PGSC0003DMG400027518 Solanum tuberosum HOM05D008124 ORTHO05D004072 4.5e-52 209.5 197 51.8
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 6.5e-51 205.7 182 54.4
Carub.0005s0890 Capsella rubella HOM05D008124 ORTHO05D004072 7.1e-50 202.2 190 53.7
Nn4g26556 Nelumbo nucifera HOM05D008124 ORTHO05D004072 2.1e-49 200.7 267 44.6
Potri.001G318100 Populus trichocarpa HOM05D008124 ORTHO05D004072 2.7e-49 200.3 179 54.2
Sp6g17920 Schrenkiella parvula HOM05D008124 ORTHO05D004072 2.7e-49 200.3 193 52.8
Thhalv10013799m.g Eutrema salsugineum HOM05D008124 ORTHO05D004072 4.6e-49 199.5 190 54.2
AL5G21140 Arabidopsis lyrata HOM05D008124 ORTHO05D004072 1.3e-48 198.0 190 54.2
Cfa000684 Carpinus fangiana HOM05D008124 ORTHO05D004072 1.3e-48 198.0 284 43.3
PSO541G0277 Papaver somniferum HOM05D008124 ORTHO05D004072 1.3e-48 198.0 281 42.7
Sopen01g040750 Solanum pennellii HOM05D008124 ORTHO05D004072 3.9e-48 196.4 197 51.3
C09p47180 Brassica napus HOM05D008124 ORTHO05D004072 5.1e-48 196.1 188 53.7
BolC9t57572H Brassica oleracea HOM05D008124 ORTHO05D004072 5.1e-48 196.1 188 53.7
Sabra16G0201300 Salix brachista HOM05D008124 ORTHO05D004072 1.9e-47 194.1 180 53.3
A10p13280 Brassica napus HOM05D008124 ORTHO05D004072 2.5e-47 193.7 193 51.8
Solyc01g097070.4 Solanum lycopersicum HOM05D008124 ORTHO05D004072 5.7e-47 192.6 173 53.8
BraA10t43425Z Brassica rapa HOM05D008124 ORTHO05D004072 3.7e-46 189.9 197 50.8
ClCG07G010840 Citrullus lanatus HOM05D008124 ORTHO05D004072 6.3e-46 189.1 287 41.5
CARHR152360 Cardamine hirsuta HOM05D008124 ORTHO05D004072 2.4e-45 187.2 168 55.4
MBI02_g36352_MAGBIO Magnolia biondii HOM05D008124 ORTHO05D004072 1.2e-44 184.9 190 50.5
HPP92_017732 Vanilla planifolia HOM05D008124 ORTHO05D004072 2.0e-44 184.1 188 50.0
THA.LOC104810998 Tarenaya hassleriana HOM05D008124 ORTHO05D004072 7.6e-44 182.2 292 40.8
Haze_06124 Corylus avellana HOM05D008124 ORTHO05D004072 8.5e-43 178.7 252 47.6
Sed0023600 Sechium edule HOM05D008124 ORTHO05D004072 1.1e-42 178.3 221 46.2
Nitab4.5_0002247g0100 Nicotiana tabacum HOM05D008124 ORTHO05D004072 4.6e-41 172.9 127 60.6
Nitab4.5_0005905g0010 Nicotiana tabacum HOM05D008124 ORTHO05D004072 4.6e-41 172.9 237 43.5
Aa31LG4G13260 Aethionema arabicum HOM05D008124 ORTHO05D004072 1.8e-40 171.0 320 37.5
Mapoly0141s0028 Marchantia polymorpha HOM05D008124 ORTHO05D004072 6.7e-40 169.1 217 42.9
Os03g0786500 Oryza sativa ssp. japonica HOM05D008124 ORTHO05D004072 7.4e-39 165.6 188 47.3
CsaV3_4G007470 Cucumis sativus L. HOM05D008124 ORTHO05D004072 1.7e-38 164.5 127 59.8
AUR62017629 Chenopodium quinoa HOM05D008124 ORTHO05D004072 3.8e-35 153.3 326 36.5
Dinv20269 Davidia involucrata HOM05D008124 ORTHO05D004072 2.5e-34 150.6 226 48.7
Zm00001eb059980 Zea mays HOM05D008124 ORTHO05D004072 3.2e-34 150.2 315 37.5
AUR62015176 Chenopodium quinoa HOM05D008124 ORTHO05D004072 1.2e-33 148.3 320 33.8
Ah.01g013150 Amaranthus hybridus HOM05D008124 ORTHO05D004072 1.6e-33 147.9 389 31.4
AagrBONN_evm.TU.Sc2ySwM_228.5614 Anthoceros agrestis HOM05D008124 ORTHO05D004072 1.1e-29 135.2 151 48.3
CDE02G3354 Ceratophyllum demersum HOM05D008124 ORTHO05D004072 1.1e-29 135.2 119 50.4
HPP92_017701 Vanilla planifolia HOM05D008124 ORTHO05D004072 3.1e-29 133.7 123 50.4
PSO170G6446 Papaver somniferum HOM05D008124 ORTHO05D004072 5.0e-27 126.3 170 40.0
Peaxi162Scf00647g00014 Petunia axillaris HOM05D008124 ORTHO05D004072 5.0e-27 126.3 125 51.2
EL10Ac9g22884 Beta vulgaris HOM05D008124 ORTHO05D004072 2.5e-26 124.0 365 32.1
Duzib116G0777 Durio zibethinus HOM05D008124 ORTHO05D004072 2.5e-26 124.0 321 34.9
Gohir.A06G110400 Gossypium hirsutum HOM05D008124 ORTHO05D004072 7.4e-23 112.5 174 38.5
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 9.1e-21 105.5 267 30.3
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 4.5e-20 103.2 182 35.7
Aqoxy5G03036 Aquilegia oxysepala HOM05D007742 ORTHO05D004072 3.2e-18 97.1 205 33.2
Thhalv10013728m.g Eutrema salsugineum HOM05D009880 ORTHO05D004072 2.7e-17 94.0 137 35.0
Aa31LG2G11760 Aethionema arabicum HOM05D009880 ORTHO05D004072 8.8e-16 89.0 137 35.8
Sp6g30080 Schrenkiella parvula HOM05D009880 ORTHO05D004072 8.8e-16 89.0 118 37.3
PSO170G3234 Papaver somniferum HOM05D007742 ORTHO05D004072 1.2e-15 88.6 142 35.2
Potri.T125504 Populus trichocarpa HOM05D007742 ORTHO05D004072 2.0e-15 87.8 151 29.8
Potri.009G112676 Populus trichocarpa HOM05D007742 ORTHO05D004072 5.7e-15 86.3 148 29.7
Potri.T125604 Populus trichocarpa HOM05D007742 ORTHO05D004072 9.7e-15 85.5 148 29.7
BcaB07g31107 Brassica carinata HOM05D009880 ORTHO05D004072 1.7e-14 84.7 140 37.1
PSO357G0543 Papaver somniferum HOM05D007742 ORTHO05D004072 1.7e-14 84.7 142 34.5
A03p06280 Brassica napus HOM05D009880 ORTHO05D004072 2.2e-14 84.3 140 33.6
BraA03t09959Z Brassica rapa HOM05D009880 ORTHO05D004072 3.7e-14 83.6 140 33.6
CiPaw.15G155500 Carya illinoinensis HOM05D007742 ORTHO05D004072 3.7e-14 83.6 147 36.1
BraA09t37545Z Brassica rapa HOM05D009880 ORTHO05D004072 8.2e-14 82.4 140 35.7
Sc16g0003130 Simmondsia chinensis HOM05D007742 ORTHO05D004072 1.4e-13 81.6 140 32.1
BcaB01g05328 Brassica carinata HOM05D009880 ORTHO05D004072 2.4e-13 80.9 140 32.9
C03p07260 Brassica napus HOM05D009880 ORTHO05D004072 2.4e-13 80.9 140 32.9
C09p24280 Brassica napus HOM05D009880 ORTHO05D004072 2.4e-13 80.9 140 36.4
BolC9t55345H Brassica oleracea HOM05D009880 ORTHO05D004072 2.4e-13 80.9 140 36.4
EL10As2g23272 Beta vulgaris HOM05D007742 ORTHO05D004072 3.1e-13 80.5 139 32.4
CSS0006654 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 5.3e-13 79.7 64 56.2
CSS0017436 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 5.3e-13 79.7 64 56.2
Sabra09G0086100 Salix brachista HOM05D007742 ORTHO05D004072 7.0e-13 79.3 147 29.9
BcaC04g22033 Brassica carinata HOM05D009880 ORTHO05D004072 9.1e-13 79.0 140 35.7
Ciclev10014656m.g Citrus clementina HOM05D007742 ORTHO05D004072 2.0e-12 77.8 141 31.2
A09p19280 Brassica napus HOM05D009880 ORTHO05D004072 3.5e-12 77.0 110 40.0
THA.LOC104823128 Tarenaya hassleriana HOM05D009880 ORTHO05D004072 7.7e-12 75.9 172 32.0
Carub.0006s1211 Capsella rubella HOM05D009880 ORTHO05D004072 2.2e-11 74.3 137 29.9
Cfa007153 Carpinus fangiana HOM05D007742 ORTHO05D004072 2.2e-11 74.3 149 32.9
QL02p069032 Quercus lobata HOM05D007742 ORTHO05D004072 2.9e-11 73.9 150 32.7
Sabra09G0086000 Salix brachista HOM05D007742 ORTHO05D004072 5.0e-11 73.2 148 29.7
CDE06G0867 Ceratophyllum demersum HOM05D007742 ORTHO05D004072 6.5e-11 72.8 75 42.7
Atru.chr6.2712 Acer truncatum HOM05D007742 ORTHO05D004072 2.5e-10 70.9 166 30.1
AL6G24570 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 7.2e-10 69.3 137 30.7
SEGI_07514 Sequoiadendron giganteum HOM05D008124 ORTHO05D004072 9.4e-10 68.9 199 27.6
Aa31LG2G11730 Aethionema arabicum HOM05D009880 ORTHO05D004072 2.1e-09 67.8 61 50.8
Lalb_Chr22g0359781 Lupinus albus HOM05D007742 ORTHO05D004072 3.6e-09 67.0 142 28.2
Lj1g0006134 Lotus japonicus HOM05D007742 ORTHO05D004072 1.4e-08 65.1 107 29.9
Gorai.010G143700 Gossypium raimondii HOM05D008124 ORTHO05D004072 3.0e-08 63.9 36 69.4
Psat3g092040 Pisum sativum HOM05D007742 ORTHO05D004072 3.0e-08 63.9 158 30.4
Ah.03g136430 Amaranthus hybridus HOM05D007742 ORTHO05D004072 5.2e-08 63.2 137 27.0
AL1G65420 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 5.2e-08 63.2 75 41.3
Actinidia37712 Actinidia chinensis HOM05D007742 ORTHO05D004072 1.2e-07 62.0 148 29.1
Glyma.19G105500 Glycine max HOM05D007742 ORTHO05D004072 2.0e-07 61.2 142 29.6
AT5G13920 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 4.4e-07 60.1 48 52.1
Dinv33270 Davidia involucrata HOM05D007742 ORTHO05D004072 9.8e-07 58.9 93 32.3
AT1G54930 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 1.3e-06 58.5 63 44.4
Haze_16000 Corylus avellana HOM05D013106 ORTHO05D017812 1.7e-06 58.2 161 28.0
arahy.Tifrunner.gnm1.ann1.U642C8 Arachis hypogaea HOM05D007742 ORTHO05D004072 3.7e-06 57.0 136 31.6
Gohir.A11G057700 Gossypium hirsutum HOM05D002182 ORTHO05D004671 3.7e-06 57.0 94 37.2
CSS0002164 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 4.8e-06 56.6 60 45.0
CSS0011273 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 4.8e-06 56.6 60 45.0
arahy.Tifrunner.gnm1.ann1.T3P4RE Arachis hypogaea HOM05D007742 ORTHO05D004072 6.3e-06 56.2 138 31.9
CARHR284540 Cardamine hirsuta HOM05D009880 ORTHO05D004072 6.3e-06 56.2 111 37.8
QL02p069084 Quercus lobata HOM05D007742 ORTHO05D004072 6.3e-06 56.2 132 29.5
Gohir.D11G061900 Gossypium hirsutum HOM05D002182 ORTHO05D004671 8.3e-06 55.8 94 38.3


User provided reference genes

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