Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os12g0615900 Oryza sativa ssp. japonica HOM05D004841 ORTHO05D005874 2.7e-138 495.4 251 100.0
Zm00001eb328580 Zea mays HOM05D004841 ORTHO05D005874 5.1e-105 384.8 251 77.7
arahy.Tifrunner.gnm1.ann1.4L8DWS Arachis hypogaea HOM05D004841 ORTHO05D005874 1.0e-65 254.2 254 55.5
arahy.Tifrunner.gnm1.ann1.9IA9LY Arachis hypogaea HOM05D004841 ORTHO05D005874 2.3e-65 253.1 254 55.5
arahy.Tifrunner.gnm1.ann1.V1DCF9 Arachis hypogaea HOM05D004841 ORTHO05D005874 8.7e-65 251.1 254 55.1
HPP92_012189 Vanilla planifolia HOM05D004841 ORTHO05D005874 8.7e-65 251.1 253 51.0
arahy.Tifrunner.gnm1.ann1.0DR3QG Arachis hypogaea HOM05D004841 ORTHO05D005874 1.1e-64 250.8 254 55.1
vmacro03353 Vaccinium macrocarpon HOM05D004841 ORTHO05D005874 7.4e-64 248.1 227 56.8
Medtr2g049300 Medicago truncatula HOM05D004841 ORTHO05D005874 1.3e-63 247.3 251 53.4
TAR628G1076 Trochodendron aralioides HOM05D004841 ORTHO05D005874 2.8e-63 246.1 255 53.3
Rhsim13G0116700 Rhododendron simsii HOM05D004841 ORTHO05D005874 4.8e-63 245.4 253 52.6
Gorai.011G046600 Gossypium raimondii HOM05D004841 ORTHO05D005874 8.2e-63 244.6 251 54.6
Nitab4.5_0004020g0010 Nicotiana tabacum HOM05D004841 ORTHO05D005874 8.2e-63 244.6 227 55.5
Gohir.D10G043800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 1.1e-62 244.2 251 54.6
Lj6g0003285 Lotus japonicus HOM05D004841 ORTHO05D005874 1.1e-62 244.2 253 52.2
Lalb_Chr11g0073321 Lupinus albus HOM05D004841 ORTHO05D005874 1.1e-62 244.2 255 53.3
Nitab4.5_0000501g0020 Nicotiana tabacum HOM05D004841 ORTHO05D005874 2.4e-62 243.0 227 55.5
Gohir.A10G042800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 4.1e-62 242.3 251 54.2
Ca_03447_v3 Cicer arietinum L. HOM05D004841 ORTHO05D005874 5.3e-62 241.9 251 52.2
COL.COLO4_31030 Corchorus olitorius HOM05D004841 ORTHO05D005874 5.3e-62 241.9 251 53.4
Psat1g020080 Pisum sativum HOM05D004841 ORTHO05D005874 5.3e-62 241.9 251 51.8
Sc02g0001540 Simmondsia chinensis HOM05D004841 ORTHO05D005874 5.3e-62 241.9 254 51.2
Oeu013128.1 Olea europaea HOM05D004841 ORTHO05D005874 6.9e-62 241.5 238 53.8
GSVIVG01034157001 Vitis vinifera HOM05D004841 ORTHO05D005874 1.2e-61 240.7 253 51.0
ECA234G4271 Erigeron canadensis HOM05D004841 ORTHO05D005874 1.5e-61 240.4 253 51.8
Migut.M00886 Erythranthe guttata HOM05D004841 ORTHO05D005874 1.5e-61 240.4 253 51.4
Thecc.06G146500 Theobroma cacao HOM05D004841 ORTHO05D005874 2.6e-61 239.6 251 54.6
Duzib235G0160 Durio zibethinus HOM05D004841 ORTHO05D005874 3.4e-61 239.2 251 54.2
HanXRQChr17g0564621 Helianthus annuus HOM05D004841 ORTHO05D005874 7.7e-61 238.0 253 52.6
Hma1.2p1_0594F.1_g185890 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 7.7e-61 238.0 254 52.0
CiPaw.10G089600 Carya illinoinensis HOM05D004841 ORTHO05D005874 1.0e-60 237.7 253 51.8
MBI02_g29870_MAGBIO Magnolia biondii HOM05D004841 ORTHO05D005874 1.0e-60 237.7 252 51.6
Sabra13G0019700 Salix brachista HOM05D000092 ORTHO05D005874 1.0e-60 237.7 252 52.0
PGSC0003DMG400022420 Solanum tuberosum HOM05D004841 ORTHO05D005874 1.0e-60 237.7 227 53.3
TPR.G29935 Trifolium pratense HOM05D004841 ORTHO05D005874 2.9e-60 236.1 251 51.0
Lsat_1_v5_gn_4_29561 Lactuca sativa HOM05D004841 ORTHO05D005874 3.8e-60 235.7 253 50.6
Potri.012G107400 Populus trichocarpa HOM05D004841 ORTHO05D005874 3.8e-60 235.7 226 55.3
Peaxi162Scf00465g00119 Petunia axillaris HOM05D004841 ORTHO05D005874 6.5e-60 235.0 228 55.3
Solyc02g078830.4 Solanum lycopersicum HOM05D004841 ORTHO05D005874 6.5e-60 235.0 227 52.9
EL10Ac7g16662 Beta vulgaris HOM05D004841 ORTHO05D005874 1.1e-59 234.2 253 49.0
CSS0019612 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 1.1e-59 234.2 255 50.6
CSS0027900 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 1.1e-59 234.2 255 50.6
CiPaw.09G120900 Carya illinoinensis HOM05D004841 ORTHO05D005874 1.1e-59 234.2 253 53.4
SGA_v2.0_scaffold146G36131 Striga asiatica HOM05D004841 ORTHO05D005874 1.1e-59 234.2 246 51.2
Lj2A321T65 Lonicera japonica HOM05D004841 ORTHO05D005874 1.4e-59 233.8 253 53.0
QL05p055481 Quercus lobata HOM05D004841 ORTHO05D005874 1.4e-59 233.8 255 52.5
Sopen02g023650 Solanum pennellii HOM05D004841 ORTHO05D005874 1.4e-59 233.8 247 50.6
Prupe.4G084200 Prunus persica HOM05D004841 ORTHO05D005874 1.9e-59 233.4 251 52.6
Ah.08g211520 Amaranthus hybridus HOM05D004841 ORTHO05D005874 2.5e-59 233.0 232 51.3
Eucgr.E02427 Eucalyptus grandis HOM05D004841 ORTHO05D005874 3.2e-59 232.6 253 49.8
Manes.17G073300 Manihot esculenta HOM05D004841 ORTHO05D005874 3.2e-59 232.6 252 50.4
CANSAT11G1247 Cannabis sativa HOM05D004841 ORTHO05D005874 4.2e-59 232.3 254 50.0
Sed0021741 Sechium edule HOM05D004841 ORTHO05D005874 4.2e-59 232.3 254 50.0
AUR62026924 Chenopodium quinoa HOM05D004841 ORTHO05D005874 5.5e-59 231.9 251 49.8
Haze_05641 Corylus avellana HOM05D004841 ORTHO05D005874 5.5e-59 231.9 253 52.6
MD05G1280700 Malus domestica HOM05D004841 ORTHO05D005874 5.5e-59 231.9 251 51.4
MSTRG.7507 Avicennia marina HOM05D004841 ORTHO05D005874 7.2e-59 231.5 253 49.8
RcHm_v2.0_Chr5g0014571 Rosa chinensis HOM05D004841 ORTHO05D005874 9.4e-59 231.1 254 51.6
Atru.chr10.1099 Acer truncatum HOM05D004841 ORTHO05D005874 1.2e-58 230.7 254 50.8
PGR031G1170 Punica granatum HOM05D004841 ORTHO05D005874 1.2e-58 230.7 255 51.0
Hund20587 Selenicereus undatus HOM05D004841 ORTHO05D005874 1.6e-58 230.3 249 51.8
Cfa000914 Carpinus fangiana HOM05D004841 ORTHO05D005874 2.1e-58 229.9 253 51.8
FAN11G3214 Fragaria x ananassa HOM05D004841 ORTHO05D005874 2.1e-58 229.9 254 50.8
FAN16G1445 Fragaria x ananassa HOM05D004841 ORTHO05D005874 2.1e-58 229.9 254 50.8
DCAR_027897 Daucus carota HOM05D004841 ORTHO05D005874 2.7e-58 229.6 252 50.8
Nn3g20436 Nelumbo nucifera HOM05D004841 ORTHO05D005874 2.7e-58 229.6 254 49.6
FvH4_3g05180 Fragaria vesca HOM05D004841 ORTHO05D005874 6.1e-58 228.4 254 50.4
FAN16G2733 Fragaria x ananassa HOM05D004841 ORTHO05D005874 7.9e-58 228.0 254 50.4
MD10G1259100 Malus domestica HOM05D004841 ORTHO05D005874 7.9e-58 228.0 252 51.2
Aqoxy5G03944 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 1.4e-57 227.3 252 48.8
Cc02_g29720 Coffea canephora HOM05D004841 ORTHO05D005874 1.4e-57 227.3 239 51.9
Aqoxy7G03441 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 1.8e-57 226.9 252 48.4
FAN25G3271 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.8e-57 226.9 254 50.4
TWI34G1122 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 3.0e-57 226.1 254 50.8
TWI63G0939 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 3.0e-57 226.1 254 50.0
VMungo1309G2918 Vigna mungo HOM05D004841 ORTHO05D005874 3.9e-57 225.7 254 51.2
Dinv21532 Davidia involucrata HOM05D004841 ORTHO05D005874 5.1e-57 225.3 254 50.4
FAN21G1690 Fragaria x ananassa HOM05D004841 ORTHO05D005874 6.7e-57 224.9 254 49.6
AT1G65030 Arabidopsis thaliana HOM05D004841 ORTHO05D005874 2.0e-56 223.4 257 49.8
C02p23090 Brassica napus HOM05D004841 ORTHO05D005874 2.5e-56 223.0 255 48.6
BolC2t08451H Brassica oleracea HOM05D004841 ORTHO05D005874 2.5e-56 223.0 255 48.6
Ciclev10015824m.g Citrus clementina HOM05D004841 ORTHO05D005874 2.5e-56 223.0 229 54.1
BcaB05g24290 Brassica carinata HOM05D004841 ORTHO05D005874 3.3e-56 222.6 257 49.0
Phvul.009G215400 Phaseolus vulgaris HOM05D004841 ORTHO05D005874 3.3e-56 222.6 254 50.4
C06p42730 Brassica napus HOM05D004841 ORTHO05D005874 4.3e-56 222.2 258 48.4
C06p42780 Brassica napus HOM05D004841 ORTHO05D005874 4.3e-56 222.2 258 48.4
BraA07t31032Z Brassica rapa HOM05D004841 ORTHO05D005874 9.7e-56 221.1 257 49.0
Glyma.15G195000 Glycine max HOM05D004841 ORTHO05D005874 9.7e-56 221.1 254 51.2
Carub.0002s1024 Capsella rubella HOM05D004841 ORTHO05D005874 1.3e-55 220.7 257 49.4
CARHR056500 Cardamine hirsuta HOM05D004841 ORTHO05D005874 1.3e-55 220.7 257 48.2
BcaB03g15189 Brassica carinata HOM05D004841 ORTHO05D005874 1.7e-55 220.3 257 48.6
A07p34060 Brassica napus HOM05D004841 ORTHO05D005874 1.7e-55 220.3 257 49.0
BraA02t06489Z Brassica rapa HOM05D004841 ORTHO05D005874 1.7e-55 220.3 257 48.2
Aa31LG2G2230 Aethionema arabicum HOM05D004841 ORTHO05D005874 2.2e-55 219.9 255 49.4
A02p14280 Brassica napus HOM05D004841 ORTHO05D005874 2.8e-55 219.5 257 48.2
Thhalv10018816m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 2.8e-55 219.5 256 48.0
Sp5g22530 Schrenkiella parvula HOM05D004841 ORTHO05D005874 4.8e-55 218.8 257 48.6
CsaV3_6G051930 Cucumis sativus L. HOM05D004841 ORTHO05D005874 6.3e-55 218.4 255 47.5
THA.LOC104821761 Tarenaya hassleriana HOM05D004841 ORTHO05D005874 8.2e-55 218.0 257 48.2
AL2G19660 Arabidopsis lyrata HOM05D004841 ORTHO05D005874 1.1e-54 217.6 257 49.4
MELO3C007114.2 Cucumis melo HOM05D004841 ORTHO05D005874 1.4e-54 217.2 255 47.5
Glyma.09G086200 Glycine max HOM05D004841 ORTHO05D005874 3.1e-54 216.1 254 50.0
Actinidia01573 Actinidia chinensis HOM05D004841 ORTHO05D005874 3.4e-53 212.6 253 48.2
PSO541G1633 Papaver somniferum HOM05D004841 ORTHO05D005874 2.2e-52 209.9 255 43.9
PSO675G7289 Papaver somniferum HOM05D004841 ORTHO05D005874 2.2e-52 209.9 255 43.9
PSO017G5522 Papaver somniferum HOM05D004841 ORTHO05D005874 3.8e-52 209.1 257 44.0
BolC6t39162H Brassica oleracea HOM05D004841 ORTHO05D005874 1.1e-51 207.6 287 43.6
SHI02861 Sapria himalayana HOM05D004841 ORTHO05D005874 3.2e-51 206.1 224 46.9
SEGI_08519 Sequoiadendron giganteum HOM05D004841 ORTHO05D005874 1.4e-49 200.7 260 41.2
ATR0772G214 Amborella trichopoda HOM05D004841 ORTHO05D005874 5.1e-49 198.7 256 43.0
BcaNung05075 Brassica carinata HOM05D004841 ORTHO05D005874 1.3e-47 194.1 257 46.3
AUR62042056 Chenopodium quinoa HOM05D004841 ORTHO05D005874 5.9e-45 185.3 167 55.7
Dinv32222 Davidia involucrata HOM05D004841 ORTHO05D005874 5.9e-45 185.3 203 49.8
ClCG01G024810 Citrullus lanatus HOM05D004841 ORTHO05D005874 9.4e-43 177.9 255 42.7
BcaNung05072 Brassica carinata HOM05D004841 ORTHO05D005874 1.2e-42 177.6 169 54.4
BcaNung05071 Brassica carinata HOM05D004841 ORTHO05D005874 1.6e-42 177.2 169 54.4
SalBow8G2637 Salvia bowleyana HOM05D004841 ORTHO05D005874 4.7e-42 175.6 245 42.0
Oeu062572.1 Olea europaea HOM05D004841 ORTHO05D005874 1.7e-36 157.1 130 60.0
Cpa.g.sc17.34 Carica papaya HOM05D004841 ORTHO05D005874 6.5e-36 155.2 134 60.4
Mapoly0001s0498 Marchantia polymorpha HOM05D004841 ORTHO05D005874 6.1e-34 148.7 227 34.4
SMO358G0291 Selaginella moellendorffii HOM05D004841 ORTHO05D005874 7.5e-32 141.7 253 33.6
Sabra13G0014000 Salix brachista HOM05D000092 ORTHO05D000042 7.7e-29 131.7 111 59.5
Sabra13G0018300 Salix brachista HOM05D004841 ORTHO05D005874 1.7e-28 130.6 100 65.0
Sabra13G0014300 Salix brachista HOM05D004841 ORTHO05D005874 6.5e-28 128.6 101 63.4
Sabra13G0015400 Salix brachista HOM05D004841 ORTHO05D005874 1.1e-27 127.9 98 64.3
Hma1.2p1_0594F.1_g185900 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 1.9e-27 127.1 100 64.0
unitig_749.g13803 Utricularia gibba HOM05D004841 ORTHO05D005874 1.9e-27 127.1 107 59.8
Sabra13G0014700 Salix brachista HOM05D000070 ORTHO05D000047 3.2e-27 126.3 98 63.3
Pp3c15_25070 Physcomitrium patens HOM05D004841 ORTHO05D005874 4.7e-26 122.5 173 38.2
AagrBONN_evm.TU.Sc2ySwM_117.2336 Anthoceros agrestis HOM05D004841 ORTHO05D005874 3.0e-25 119.8 158 43.0
C06p41890 Brassica napus HOM05D004841 ORTHO05D005874 2.0e-24 117.1 97 59.8
Pp3c9_24890 Physcomitrium patens HOM05D004841 ORTHO05D005874 3.4e-24 116.3 192 33.9
BolC6t39240H Brassica oleracea HOM05D004841 ORTHO05D005874 1.7e-23 114.0 97 58.8
Cre03.g205800 Chlamydomonas reinhardtii HOM05D004841 ORTHO05D005874 1.7e-23 114.0 262 28.6
Sabra13G0018400 Salix brachista HOM05D004841 ORTHO05D004358 6.3e-23 112.1 133 46.6
Sabra13G0015100 Salix brachista HOM05D004841 ORTHO05D005874 5.9e-21 105.5 83 63.9
Sabra13G0019300 Salix brachista HOM05D004841 ORTHO05D005874 5.9e-21 105.5 83 63.9
CBR_g4467 Chara braunii HOM05D004841 ORTHO05D005874 1.3e-20 104.4 255 26.3
CDE07G1158 Ceratophyllum demersum HOM05D004841 ORTHO05D005874 1.5e-16 90.9 96 43.8
Cpa.g.c47956 Carica papaya HOM05D004841 ORTHO05D005874 1.7e-12 77.4 105 40.0
Sabra13G0018600 Salix brachista HOM05D004841 ORTHO05D005874 5.0e-12 75.9 52 71.2
Thhalv10019798m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 8.6e-12 75.1 120 39.2
Actinidia16778 Actinidia chinensis HOM05D004841 ORTHO05D005874 3.7e-07 59.7 38 71.1
unitig_749.g13802 Utricularia gibba HOM05D004841 ORTHO05D005874 3.7e-07 59.7 94 37.2


User provided reference genes

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