Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os12g0508266 Oryza sativa ssp. japonica HOM05D005641 ORTHO05D007953 1.6e-87 326.2 154 100.0
Zm00001eb137960 Zea mays HOM05D005641 ORTHO05D007953 4.5e-66 255.0 152 78.9
Aqoxy6G02714 Aquilegia oxysepala HOM05D005641 ORTHO05D007953 4.1e-51 205.3 136 65.4
Dinv42223 Davidia involucrata HOM05D005641 ORTHO05D007953 1.0e-49 200.7 140 63.6
Potri.009G090100 Populus trichocarpa HOM05D005641 ORTHO05D007953 5.0e-49 198.4 144 62.5
CSS0033790 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 8.6e-49 197.6 150 61.3
CDE06G0500 Ceratophyllum demersum HOM05D005641 ORTHO05D007953 1.5e-48 196.8 140 60.0
CSS0039741 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 1.9e-48 196.4 150 61.3
HanXRQChr03g0069981 Helianthus annuus HOM05D005641 ORTHO05D007953 1.9e-48 196.4 138 62.3
Haze_10242 Corylus avellana HOM05D005641 ORTHO05D007953 4.3e-48 195.3 125 67.2
Sabra09G0069700 Salix brachista HOM05D005641 ORTHO05D007953 4.3e-48 195.3 141 62.4
Eucgr.G01263 Eucalyptus grandis HOM05D005641 ORTHO05D007953 5.6e-48 194.9 143 59.4
Cfa004645 Carpinus fangiana HOM05D005641 ORTHO05D007953 7.3e-48 194.5 125 67.2
Nn1g04606 Nelumbo nucifera HOM05D005641 ORTHO05D007953 7.3e-48 194.5 136 63.2
Manes.10G080400 Manihot esculenta HOM05D005641 ORTHO05D007953 9.5e-48 194.1 140 59.3
CiPaw.06G166900 Carya illinoinensis HOM05D005641 ORTHO05D007953 1.6e-47 193.4 138 62.3
TAR376G1148 Trochodendron aralioides HOM05D005641 ORTHO05D007953 2.8e-47 192.6 136 63.2
GSVIVG01037858001 Vitis vinifera HOM05D005641 ORTHO05D007953 2.8e-47 192.6 126 65.9
Thecc.02G114700 Theobroma cacao HOM05D005641 ORTHO05D007953 4.7e-47 191.8 147 59.9
EL10Ac8g19366 Beta vulgaris HOM05D005641 ORTHO05D007953 6.2e-47 191.4 145 57.9
QL02p069388 Quercus lobata HOM05D005641 ORTHO05D007953 6.2e-47 191.4 121 67.8
TWI14G0306 Tripterygium wilfordii HOM05D005641 ORTHO05D007953 8.0e-47 191.0 137 63.5
Gorai.005G232800 Gossypium raimondii HOM05D005641 ORTHO05D007953 1.4e-46 190.3 129 64.3
Hma1.2p1_1023F.1_g248880 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 1.4e-46 190.3 123 66.7
MD05G1097100 Malus domestica HOM05D005641 ORTHO05D007953 1.4e-46 190.3 123 66.7
ECA240G0483 Erigeron canadensis HOM05D005641 ORTHO05D007953 1.8e-46 189.9 140 60.7
HPP92_020459 Vanilla planifolia HOM05D005641 ORTHO05D007953 1.8e-46 189.9 123 68.3
Gohir.D02G205400 Gossypium hirsutum HOM05D005641 ORTHO05D007953 6.8e-46 188.0 129 63.6
PGR042G1829 Punica granatum HOM05D005641 ORTHO05D007953 6.8e-46 188.0 134 61.9
Cc02_g19690 Coffea canephora HOM05D005641 ORTHO05D007953 8.9e-46 187.6 141 61.0
Prupe.8G141700 Prunus persica HOM05D005641 ORTHO05D007953 8.9e-46 187.6 123 65.0
Rhsim05G0090100 Rhododendron simsii HOM05D005641 ORTHO05D007953 8.9e-46 187.6 125 67.2
AUR62022504 Chenopodium quinoa HOM05D005641 ORTHO05D007953 1.5e-45 186.8 145 57.9
FvH4_2g04060 Fragaria vesca HOM05D005641 ORTHO05D007953 1.5e-45 186.8 128 64.1
FAN15G3008 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.5e-45 186.8 128 64.1
Ah.09g231980 Amaranthus hybridus HOM05D005641 ORTHO05D007953 2.0e-45 186.4 139 61.2
FAN24G2036 Fragaria x ananassa HOM05D005641 ORTHO05D007953 2.0e-45 186.4 136 62.5
AUR62031337 Chenopodium quinoa HOM05D005641 ORTHO05D007953 2.6e-45 186.0 138 59.4
MELO3C017992.2 Cucumis melo HOM05D005641 ORTHO05D007953 3.4e-45 185.7 123 65.0
COL.COLO4_32537 Corchorus olitorius HOM05D005641 ORTHO05D007953 4.4e-45 185.3 147 58.5
Gohir.A03G183900 Gossypium hirsutum HOM05D005641 ORTHO05D007953 4.4e-45 185.3 128 62.5
RcHm_v2.0_Chr6g0253411 Rosa chinensis HOM05D005641 ORTHO05D007953 4.4e-45 185.3 130 62.3
Hund12610 Selenicereus undatus HOM05D005641 ORTHO05D007953 4.4e-45 185.3 143 59.4
HPP92_026175 Vanilla planifolia HOM05D005641 ORTHO05D007953 5.8e-45 184.9 123 66.7
Aa31LG8G12890 Aethionema arabicum HOM05D005641 ORTHO05D007953 7.5e-45 184.5 132 61.4
CsaV3_4G000430 Cucumis sativus L. HOM05D005641 ORTHO05D007953 7.5e-45 184.5 123 64.2
Sp3g28020 Schrenkiella parvula HOM05D005641 ORTHO05D007953 7.5e-45 184.5 125 61.6
Migut.N01150 Erythranthe guttata HOM05D005641 ORTHO05D007953 9.8e-45 184.1 126 64.3
Migut.O00678 Erythranthe guttata HOM05D005641 ORTHO05D007953 9.8e-45 184.1 126 64.3
SEGI_20221 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 9.8e-45 184.1 130 63.1
SEGI_25796 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 9.8e-45 184.1 130 63.1
Atru.chr5.2402 Acer truncatum HOM05D005641 ORTHO05D007953 1.3e-44 183.7 140 57.1
FAN20G2714 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.3e-44 183.7 125 64.0
Oeu037265.1 Olea europaea HOM05D005641 ORTHO05D007953 1.3e-44 183.7 124 64.5
BcaC04g23064 Brassica carinata HOM05D005641 ORTHO05D007953 1.7e-44 183.3 125 62.4
BolC9t54144H Brassica oleracea HOM05D005641 ORTHO05D007953 1.7e-44 183.3 125 62.4
A09p10560 Brassica napus HOM05D005641 ORTHO05D007953 2.2e-44 183.0 125 62.4
BraA09t36698Z Brassica rapa HOM05D005641 ORTHO05D007953 2.2e-44 183.0 125 62.4
CARHR284800 Cardamine hirsuta HOM05D005641 ORTHO05D007953 2.2e-44 183.0 125 60.8
Lsat_1_v5_gn_9_112460 Lactuca sativa HOM05D005641 ORTHO05D007953 3.7e-44 182.2 132 59.1
Lj1g0011960 Lotus japonicus HOM05D005641 ORTHO05D007953 3.7e-44 182.2 133 60.9
DCAR_029115 Daucus carota HOM05D005641 ORTHO05D007953 6.4e-44 181.4 122 62.3
Sc14g0002550 Simmondsia chinensis HOM05D005641 ORTHO05D007953 6.4e-44 181.4 143 58.0
C09p12490 Brassica napus HOM05D005641 ORTHO05D007953 8.3e-44 181.0 125 60.8
vmacro19527 Vaccinium macrocarpon HOM05D005641 ORTHO05D007953 8.3e-44 181.0 125 64.8
Carub.0003s2882 Capsella rubella HOM05D005641 ORTHO05D007953 1.1e-43 180.6 125 60.0
THA.LOC104819534 Tarenaya hassleriana HOM05D005641 ORTHO05D007953 1.1e-43 180.6 130 60.0
Phvul.002G052300 Phaseolus vulgaris HOM05D005641 ORTHO05D007953 1.4e-43 180.3 119 63.9
Cpa.g.sc106.73 Carica papaya HOM05D005641 ORTHO05D007953 1.9e-43 179.9 122 63.1
PSO675G2895 Papaver somniferum HOM05D005641 ORTHO05D007953 1.9e-43 179.9 122 63.1
CANSAT25G1977 Cannabis sativa HOM05D005641 ORTHO05D007953 2.4e-43 179.5 125 61.6
Thhalv10022899m.g Eutrema salsugineum HOM05D005641 ORTHO05D007953 3.2e-43 179.1 125 60.8
AL3G46570 Arabidopsis lyrata HOM05D005641 ORTHO05D007953 7.0e-43 177.9 125 60.0
AT2G14825 Arabidopsis thaliana HOM05D005641 ORTHO05D007953 7.0e-43 177.9 125 59.2
Eucgr.G01266 Eucalyptus grandis HOM05D005641 ORTHO05D007953 9.2e-43 177.6 141 53.9
Medtr5g005150 Medicago truncatula HOM05D005641 ORTHO05D007953 2.0e-42 176.4 132 59.1
PSO541G1794 Papaver somniferum HOM05D005641 ORTHO05D007953 2.0e-42 176.4 141 57.4
MSTRG.5328 Avicennia marina HOM05D005641 ORTHO05D007953 4.6e-42 175.3 134 57.5
Ciclev10029502m.g Citrus clementina HOM05D005641 ORTHO05D007953 1.0e-41 174.1 120 60.8
SGA_v2.0_scaffold337G49200 Striga asiatica HOM05D005641 ORTHO05D007953 1.0e-41 174.1 130 61.5
FAN27G3103 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.7e-41 173.3 119 64.7
Duzib052G0024 Durio zibethinus HOM05D005641 ORTHO05D007953 2.3e-41 172.9 154 53.9
PGSC0003DMG400005454 Solanum tuberosum HOM05D005641 ORTHO05D007953 3.0e-41 172.6 138 54.3
PGR042G3728 Punica granatum HOM05D005641 ORTHO05D007953 5.0e-41 171.8 132 58.3
Sopen10g020870 Solanum pennellii HOM05D005641 ORTHO05D007953 1.1e-40 170.6 138 53.6
unitig_744.g24456 Utricularia gibba HOM05D005641 ORTHO05D007953 1.5e-40 170.2 123 61.0
Sed0000346 Sechium edule HOM05D005641 ORTHO05D007953 1.9e-40 169.9 123 61.8
TPR.G8292 Trifolium pratense HOM05D005641 ORTHO05D007953 1.9e-40 169.9 126 55.6
Solyc10g049650.3 Solanum lycopersicum HOM05D005641 ORTHO05D007953 3.3e-40 169.1 138 52.9
Nitab4.5_0012285g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 4.3e-40 168.7 140 50.7
arahy.Tifrunner.gnm1.ann1.GRNJ5W Arachis hypogaea HOM05D005641 ORTHO05D007953 9.5e-40 167.5 120 60.8
Glyma.01G243000 Glycine max HOM05D005641 ORTHO05D007953 1.2e-39 167.2 137 55.5
Actinidia27984 Actinidia chinensis HOM05D005641 ORTHO05D007953 6.2e-39 164.9 125 62.4
CAN.G1.68 Capsicum annuum HOM05D005641 ORTHO05D007953 1.4e-38 163.7 140 50.7
Ciclev10028542m.g Citrus clementina HOM05D005641 ORTHO05D007953 1.8e-38 163.3 124 57.3
QL02p069415 Quercus lobata HOM05D000030 ORTHO05D000009 1.5e-37 160.2 113 59.3
VMungo1215G0158 Vigna mungo HOM05D005641 ORTHO05D007953 9.9e-37 157.5 152 48.7
Peaxi162Scf00083g00163 Petunia axillaris HOM05D005641 ORTHO05D007953 1.1e-35 154.1 129 49.6
Nitab4.5_0001259g0120 Nicotiana tabacum HOM05D005641 ORTHO05D007953 9.2e-35 151.0 115 55.7
SMO119G0506 Selaginella moellendorffii HOM05D005641 ORTHO05D007953 1.1e-32 144.1 121 57.0
Hma1.2p1_1023F.1_g248890 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 7.3e-32 141.4 138 50.0
Pp3c6_20250 Physcomitrium patens HOM05D005641 ORTHO05D007953 1.2e-31 140.6 126 51.6
SalBow3G4250 Salvia bowleyana HOM05D005641 ORTHO05D007953 1.6e-31 140.2 86 67.4
Ca_24352_v3 Cicer arietinum L. HOM05D005641 ORTHO05D007953 1.8e-30 136.7 80 68.8
Hma1.2p1_1023F.1_g248900 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 1.1e-27 127.5 75 72.0
CBR_g32245 Chara braunii HOM05D005641 ORTHO05D007953 5.4e-27 125.2 121 47.1
arahy.Tifrunner.gnm1.ann1.C5GEYC Arachis hypogaea HOM05D005641 ORTHO05D007953 1.5e-24 117.1 120 48.3
Lj9A326T79 Lonicera japonica HOM05D005641 ORTHO05D007953 9.6e-24 114.4 82 59.8
Lj9A326T80 Lonicera japonica HOM05D005641 ORTHO05D007953 5.8e-21 105.1 72 61.1
RcHm_v2.0_Chr6g0253251 Rosa chinensis HOM05D005641 ORTHO05D007953 9.9e-21 104.4 107 42.1
RcHm_v2.0_Chr6g0253401 Rosa chinensis HOM05D005641 ORTHO05D035713 1.7e-20 103.6 96 51.0
Psat4g227920 Pisum sativum HOM05D005641 ORTHO05D007953 4.9e-20 102.1 133 39.8
FvH4_2g04050 Fragaria vesca HOM05D005641 ORTHO05D035713 8.4e-20 101.3 96 50.0
RcHm_v2.0_Chr6g0253291 Rosa chinensis HOM05D005641 ORTHO05D007953 8.4e-20 101.3 96 44.8
Prupe.8G141500 Prunus persica HOM05D005641 ORTHO05D007953 1.6e-18 97.1 94 43.6
ClCG10G010510 Citrullus lanatus HOM05D005641 ORTHO05D007953 6.6e-17 91.7 123 39.8
RcHm_v2.0_Chr6g0253341 Rosa chinensis HOM05D005641 ORTHO05D007953 1.9e-16 90.1 102 41.2
RcHm_v2.0_Chr6g0253371 Rosa chinensis HOM05D001615 ORTHO05D001493 8.1e-15 84.7 96 42.7
Zm00001eb264710 Zea mays HOM05D005641 ORTHO05D007953 4.5e-13 79.0 60 60.0
Lalb_Chr16g0376281 Lupinus albus HOM05D005641 ORTHO05D007953 6.4e-12 75.1 56 57.1
Peaxi162Scf00003g02633 Petunia axillaris HOM05D005641 ORTHO05D007953 1.1e-11 74.3 143 29.4
RcHm_v2.0_Chr6g0253281 Rosa chinensis HOM05D005641 ORTHO05D007953 7.1e-11 71.6 70 48.6
FAN24G2128 Fragaria x ananassa HOM05D005641 ORTHO05D208318 3.3e-08 62.8 64 45.3
CAN.G438.90 Capsicum annuum HOM05D002499 ORTHO05D002812 6.2e-07 58.5 63 38.1
Nitab4.5_0003335g0050 Nicotiana tabacum HOM05D002499 ORTHO05D002812 6.2e-07 58.5 63 36.5
Peaxi162Scf00023g01330 Petunia axillaris HOM05D002499 ORTHO05D002812 6.2e-07 58.5 63 36.5
Solyc03g120000.3 Solanum lycopersicum HOM05D002499 ORTHO05D002812 6.2e-07 58.5 63 38.1
Sopen03g038880 Solanum pennellii HOM05D002499 ORTHO05D002812 6.2e-07 58.5 63 38.1
PGSC0003DMG400005610 Solanum tuberosum HOM05D002499 ORTHO05D002812 6.2e-07 58.5 63 38.1
Cfa004644 Carpinus fangiana HOM05D005641 ORTHO05D002074 1.4e-06 57.4 39 59.0
Haze_25537 Corylus avellana HOM05D002499 ORTHO05D002812 4.0e-06 55.8 58 37.9
Manes.14G114800 Manihot esculenta HOM05D002499 ORTHO05D002812 5.3e-06 55.5 58 39.7
Zm00001eb234370 Zea mays HOM05D002499 ORTHO05D002812 5.3e-06 55.5 63 36.5
arahy.Tifrunner.gnm1.ann1.34GBRB Arachis hypogaea HOM05D002499 ORTHO05D002812 6.9e-06 55.1 58 37.9
arahy.Tifrunner.gnm1.ann1.G6L3X6 Arachis hypogaea HOM05D002499 ORTHO05D002812 6.9e-06 55.1 58 37.9
Os02g0182900 Oryza sativa ssp. japonica HOM05D002499 ORTHO05D002812 9.0e-06 54.7 63 34.9


User provided reference genes

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