Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 7.4e-312 1073.2 541 100.0
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 7.9e-188 661.0 491 65.4
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 2.3e-187 659.4 463 68.5
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 5.1e-187 658.3 463 68.3
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 1.4e-184 650.2 463 67.8
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 3.8e-182 642.1 463 65.9
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 3.8e-182 642.1 464 65.5
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 5.0e-182 641.7 463 65.7
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 5.0e-182 641.7 463 65.0
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 6.5e-182 641.3 463 66.3
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 1.1e-181 640.6 478 64.4
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 2.5e-181 639.4 463 65.7
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 7.2e-181 637.9 463 65.7
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 9.3e-181 637.5 463 66.5
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 2.1e-180 636.3 463 65.2
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 2.7e-180 636.0 463 63.9
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 1.3e-179 633.6 464 64.9
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 1.8e-179 633.3 463 65.4
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 3.9e-179 632.1 463 65.4
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 3.9e-179 632.1 467 64.7
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 1.1e-178 630.6 463 65.4
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 1.1e-178 630.6 463 65.4
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 7.4e-178 627.9 464 65.3
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 1.6e-177 626.7 464 64.2
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 1.6e-177 626.7 464 64.7
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 2.2e-177 626.3 463 65.9
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 2.8e-177 625.9 463 64.8
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 2.8e-177 625.9 507 59.6
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 1.8e-176 623.2 463 63.9
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 2.4e-176 622.9 462 64.7
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 3.1e-176 622.5 463 64.4
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 4.1e-176 622.1 500 61.8
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 6.9e-176 621.3 463 65.0
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 1.2e-175 620.5 464 63.8
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 3.4e-175 619.0 489 60.9
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 7.7e-175 617.8 463 63.7
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 1.7e-174 616.7 463 64.1
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 2.9e-174 615.9 463 63.5
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 2.9e-174 615.9 463 64.1
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 3.8e-174 615.5 462 63.9
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 5.0e-174 615.1 462 63.9
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 2.5e-173 612.8 463 63.7
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 9.4e-173 610.9 463 64.1
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 1.2e-172 610.5 462 62.3
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 1.2e-172 610.5 464 64.2
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 3.6e-172 609.0 463 62.4
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 4.6e-172 608.6 464 62.3
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 7.9e-172 607.8 464 62.7
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 1.4e-171 607.1 466 62.4
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 1.8e-171 606.7 462 63.0
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 3.9e-171 605.5 463 62.9
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 6.7e-171 604.7 477 62.3
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 8.8e-171 604.4 498 59.2
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 2.6e-170 602.8 462 62.3
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 3.3e-170 602.4 477 62.5
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 3.3e-170 602.4 488 61.5
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 4.4e-170 602.1 462 62.3
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 4.4e-170 602.1 462 62.3
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 1.3e-169 600.5 493 60.6
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 1.3e-169 600.5 462 62.3
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 1.3e-169 600.5 462 60.8
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 1.3e-169 600.5 456 63.2
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.3e-169 600.5 464 61.4
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 1.7e-169 600.1 462 62.3
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 2.2e-169 599.7 462 61.7
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 3.7e-169 599.0 462 62.8
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 4.8e-169 598.6 465 61.5
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 8.2e-169 597.8 463 62.0
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 2.4e-168 596.3 464 62.5
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 3.1e-168 595.9 460 62.2
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 3.1e-168 595.9 465 60.9
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 4.1e-168 595.5 495 59.8
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 1.2e-167 594.0 493 60.0
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 1.5e-167 593.6 463 63.5
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 1.5e-167 593.6 480 60.8
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 2.0e-167 593.2 465 60.6
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 2.0e-167 593.2 492 58.7
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 5.9e-167 591.7 464 61.9
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 1.0e-166 590.9 509 58.5
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 1.7e-166 590.1 463 63.5
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 2.9e-166 589.3 464 61.0
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 5.0e-166 588.6 460 63.0
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 8.5e-166 587.8 464 61.2
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 1.9e-165 586.6 463 62.0
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 1.9e-165 586.6 480 59.2
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 7.2e-165 584.7 527 56.2
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.2e-164 583.9 463 62.2
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 2.7e-164 582.8 471 60.7
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 3.6e-164 582.4 484 59.9
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 4.7e-164 582.0 463 61.6
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 4.7e-164 582.0 463 61.6
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 6.1e-164 581.6 462 61.7
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 6.1e-164 581.6 459 61.9
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 1.4e-163 580.5 462 61.0
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 1.4e-163 580.5 498 57.8
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 1.4e-163 580.5 464 60.6
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 5.2e-163 578.6 498 57.6
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 6.7e-163 578.2 463 62.0
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.5e-162 577.0 451 61.4
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 8.2e-161 571.2 472 59.1
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 2.0e-159 566.6 464 60.6
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 3.5e-159 565.8 603 52.4
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 3.5e-159 565.8 476 58.8
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 1.0e-158 564.3 465 60.6
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 1.1e-157 560.8 464 59.9
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 5.5e-157 558.5 525 54.9
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 5.5e-157 558.5 451 61.6
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 9.4e-157 557.8 451 60.1
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 2.7e-156 556.2 464 59.1
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 6.1e-156 555.1 500 57.0
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 1.7e-153 547.0 464 59.9
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.4e-152 543.9 463 58.7
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 1.0e-150 537.7 603 48.8
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 2.3e-147 526.6 391 64.2
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 2.8e-145 519.6 472 55.1
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 1.1e-144 517.7 463 57.0
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 4.2e-141 505.8 363 66.7
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 6.8e-139 498.4 362 67.7
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 5.7e-138 495.4 476 53.4
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 2.8e-137 493.0 465 54.8
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 6.3e-137 491.9 366 63.9
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 7.3e-133 478.4 466 52.1
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 3.5e-127 459.5 463 51.4
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 2.6e-122 443.4 394 58.4
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 1.1e-120 438.0 470 51.1
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.2e-114 417.9 470 47.9
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 7.5e-114 415.2 326 60.7
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 2.9e-113 413.3 361 57.1
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 4.9e-113 412.5 289 67.5
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 4.3e-109 399.4 310 63.9
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 6.2e-100 369.0 482 45.0
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 7.1e-96 355.5 478 43.1
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 1.3e-94 351.3 243 68.3
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 1.9e-88 330.9 270 60.4
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 1.6e-87 327.8 271 57.2
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 2.1e-87 327.4 219 72.6
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 9.6e-85 318.5 457 40.0
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 1.6e-84 317.8 217 68.2
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 2.6e-82 310.5 212 67.9
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 2.1e-79 300.8 224 63.4
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 4.8e-76 289.7 223 63.7
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 2.9e-73 280.4 468 36.3
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 3.8e-73 280.0 221 61.5
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 2.3e-70 270.8 326 48.2
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 2.3e-70 270.8 247 54.3
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.1e-67 260.4 221 57.9
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 1.5e-61 241.5 196 59.2
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 4.5e-58 229.9 504 32.5
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 1.7e-57 228.0 184 61.4
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 8.5e-57 225.7 275 49.1
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 1.0e-54 218.8 162 64.2
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 8.2e-52 209.1 273 46.5
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 1.4e-48 198.4 224 49.6
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 2.2e-44 184.5 126 66.7
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 7.0e-43 179.5 188 51.6
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 9.1e-43 179.1 124 66.1
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.7e-41 174.9 139 59.0
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 3.6e-39 167.2 137 63.5
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 2.0e-37 161.4 114 63.2
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 3.5e-26 124.0 79 72.2
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 6.6e-25 119.8 76 75.0
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 8.6e-25 119.4 81 66.7
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 1.9e-24 118.2 157 43.9
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 1.9e-24 118.2 102 61.8
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 2.5e-24 117.9 81 64.2
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 2.5e-24 117.9 311 31.2
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 1.2e-23 115.5 85 62.4
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 8.0e-23 112.8 310 29.7
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 1.4e-22 112.1 77 64.9
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 1.1e-19 102.4 84 53.6
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 1.2e-18 99.0 110 49.1
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 2.0e-18 98.2 66 69.7
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 1.0e-17 95.9 61 75.4
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 1.3e-17 95.5 80 63.8
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 1.5e-16 92.0 130 40.8
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 4.3e-16 90.5 64 56.2
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 7.3e-16 89.7 162 38.3
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 4.7e-15 87.0 61 62.3
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 1.0e-14 85.9 178 33.1
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 9.2e-11 72.8 69 47.8
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 1.6e-10 72.0 79 49.4
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 6.0e-10 70.1 51 52.9
SMO164G0195 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 3.0e-09 67.8 158 32.3
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 1.5e-08 65.5 48 64.6
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 3.3e-08 64.3 110 40.9


User provided reference genes

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