Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os12g0133900 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 7.5e-247 857.1 543 100.0
Os11g0137100 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 6.4e-230 800.8 543 93.2
Zm00001eb293550 Zea mays HOM05D004813 ORTHO05D005889 5.5e-173 611.7 556 71.8
Nn4g22713 Nelumbo nucifera HOM05D004813 ORTHO05D005889 2.4e-112 410.2 557 53.0
Dinv20637 Davidia involucrata HOM05D004813 ORTHO05D005889 3.5e-111 406.4 539 56.6
CSS0044871 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 1.3e-110 404.4 545 54.5
CSS0009747 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 1.7e-110 404.1 553 54.6
Peaxi162Scf00089g01844 Petunia axillaris HOM05D004813 ORTHO05D005889 2.3e-110 403.7 549 57.0
TAR629G2765 Trochodendron aralioides HOM05D004813 ORTHO05D005889 1.1e-109 401.4 543 53.6
Nitab4.5_0000514g0060 Nicotiana tabacum HOM05D004813 ORTHO05D005889 1.9e-109 400.6 552 55.6
Cc04_g12130 Coffea canephora HOM05D004813 ORTHO05D005889 2.4e-107 393.7 544 54.4
Cfa019150 Carpinus fangiana HOM05D004813 ORTHO05D005889 3.8e-105 386.3 543 45.7
MBI16_g39216_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.1e-104 384.8 550 53.1
vmacro16622 Vaccinium macrocarpon HOM05D004813 ORTHO05D005889 1.1e-104 384.8 566 50.5
MBI17_g17505_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.9e-104 384.0 547 56.5
CDE05G0644 Ceratophyllum demersum HOM05D004813 ORTHO05D005889 3.2e-104 383.3 568 51.8
Phvul.003G201700 Phaseolus vulgaris HOM05D004813 ORTHO05D005889 4.2e-104 382.9 547 52.7
MBI16_g37492_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 2.1e-103 380.6 549 53.4
GSVIVG01007723001 Vitis vinifera HOM05D004813 ORTHO05D005889 2.1e-103 380.6 532 47.4
DCAR_031351 Daucus carota HOM05D004813 ORTHO05D005889 3.5e-103 379.8 527 53.5
Potri.012G082600 Populus trichocarpa HOM05D004813 ORTHO05D005889 4.6e-103 379.4 531 52.9
TWI14G0980 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 4.6e-103 379.4 564 52.3
Eucgr.K02829 Eucalyptus grandis HOM05D004813 ORTHO05D005889 6.0e-103 379.0 577 52.9
Manes.14G064300 Manihot esculenta HOM05D004813 ORTHO05D005889 7.9e-103 378.6 547 53.2
Glyma.05G038800 Glycine max HOM05D004813 ORTHO05D005889 3.9e-102 376.3 544 53.9
Cpa.g.sc76.31 Carica papaya HOM05D004813 ORTHO05D005889 1.1e-101 374.8 540 55.0
Oeu016404.1 Olea europaea HOM05D004813 ORTHO05D005889 1.9e-101 374.0 540 55.7
Thecc.03G014500 Theobroma cacao HOM05D004813 ORTHO05D005889 4.3e-101 372.9 548 56.0
CANSAT80G1068 Cannabis sativa HOM05D004813 ORTHO05D005889 9.6e-101 371.7 546 55.5
COL.COLO4_30069 Corchorus olitorius HOM05D004813 ORTHO05D005889 9.6e-101 371.7 539 50.6
Sabra15G0103000 Salix brachista HOM05D004813 ORTHO05D005889 9.6e-101 371.7 530 53.8
VMungo1215G0389 Vigna mungo HOM05D004813 ORTHO05D005889 9.6e-101 371.7 544 54.6
Ciclev10019513m.g Citrus clementina HOM05D004813 ORTHO05D005889 1.3e-100 371.3 562 52.5
Hund02755 Selenicereus undatus HOM05D004813 ORTHO05D005889 1.3e-100 371.3 546 54.8
Glyma.17G088200 Glycine max HOM05D004813 ORTHO05D005889 1.6e-100 370.9 540 54.1
Lsat_1_v5_gn_4_75841 Lactuca sativa HOM05D004813 ORTHO05D005889 2.8e-100 370.2 547 52.1
PGR044G0958 Punica granatum HOM05D004813 ORTHO05D005889 4.8e-100 369.4 553 54.4
TWI23G0210 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 8.1e-100 368.6 574 53.7
PSO063G0570 Papaver somniferum HOM05D004813 ORTHO05D005889 2.4e-99 367.1 548 49.1
CiPaw.11G024600 Carya illinoinensis HOM05D004813 ORTHO05D005889 4.0e-99 366.3 517 55.5
Rhsim12G0165800 Rhododendron simsii HOM05D004813 ORTHO05D005889 4.0e-99 366.3 520 46.5
MELO3C026213.2 Cucumis melo HOM05D004813 ORTHO05D005889 5.3e-99 365.9 548 51.3
A07p17440 Brassica napus HOM05D004813 ORTHO05D005889 1.2e-98 364.8 532 53.2
Migut.D01957 Erythranthe guttata HOM05D004813 ORTHO05D005889 1.2e-98 364.8 563 51.3
CARHR281210 Cardamine hirsuta HOM05D004813 ORTHO05D005889 1.5e-98 364.4 548 51.1
Potri.015G078500 Populus trichocarpa HOM05D004813 ORTHO05D005889 3.4e-98 363.2 541 56.0
PSO832G2178 Papaver somniferum HOM05D004813 ORTHO05D005889 4.5e-98 362.8 545 49.5
arahy.Tifrunner.gnm1.ann1.J26J1M Arachis hypogaea HOM05D004813 ORTHO05D005889 5.8e-98 362.5 550 52.5
BcaB02g10019 Brassica carinata HOM05D004813 ORTHO05D005889 7.6e-98 362.1 539 55.3
Psat4g058360 Pisum sativum HOM05D004813 ORTHO05D005889 7.6e-98 362.1 544 48.3
CsaV3_1G000640 Cucumis sativus L. HOM05D004813 ORTHO05D005889 9.9e-98 361.7 548 50.7
MD14G1178200 Malus domestica HOM05D004813 ORTHO05D005889 9.9e-98 361.7 552 50.0
Gorai.008G296300 Gossypium raimondii HOM05D004813 ORTHO05D005889 1.3e-97 361.3 541 54.7
Thhalv10003981m.g Eutrema salsugineum HOM05D004813 ORTHO05D005889 1.7e-97 360.9 541 51.6
MD06G1172400 Malus domestica HOM05D004813 ORTHO05D005889 2.2e-97 360.5 559 53.7
AT5G66540 Arabidopsis thaliana HOM05D004813 ORTHO05D005889 3.8e-97 359.8 545 53.2
Lj4g0001275 Lotus japonicus HOM05D004813 ORTHO05D005889 1.1e-96 358.2 569 48.7
Sc04g0001740 Simmondsia chinensis HOM05D004813 ORTHO05D005889 1.1e-96 358.2 560 49.3
arahy.Tifrunner.gnm1.ann1.9LWV25 Arachis hypogaea HOM05D004813 ORTHO05D005889 1.9e-96 357.5 551 52.3
BcaNung05723 Brassica carinata HOM05D004813 ORTHO05D005889 2.4e-96 357.1 546 51.8
Gohir.D12G275800 Gossypium hirsutum HOM05D004813 ORTHO05D005889 4.2e-96 356.3 541 53.6
Sopen03g031900 Solanum pennellii HOM05D004813 ORTHO05D005889 4.2e-96 356.3 528 53.8
C09p11820 Brassica napus HOM05D004813 ORTHO05D005889 5.5e-96 355.9 531 52.7
BraA09t36642Z Brassica rapa HOM05D004813 ORTHO05D005889 5.5e-96 355.9 534 53.4
HanXRQChr15g0463041 Helianthus annuus HOM05D004813 ORTHO05D005889 5.5e-96 355.9 552 49.1
Carub.0002s0981 Capsella rubella HOM05D004813 ORTHO05D005889 7.1e-96 355.5 531 53.7
Ca_21934_v3 Cicer arietinum L. HOM05D004813 ORTHO05D005889 9.3e-96 355.1 547 51.0
BcaC04g23133 Brassica carinata HOM05D004813 ORTHO05D005889 2.7e-95 353.6 534 52.2
Carub.0008s2799 Capsella rubella HOM05D004813 ORTHO05D005889 2.7e-95 353.6 540 51.3
Gohir.A12G275100 Gossypium hirsutum HOM05D004813 ORTHO05D005889 2.7e-95 353.6 540 55.4
A09p09960 Brassica napus HOM05D004813 ORTHO05D005889 3.5e-95 353.2 537 52.9
BolC9t54072H Brassica oleracea HOM05D004813 ORTHO05D005889 3.5e-95 353.2 534 52.2
Solyc03g112820.4 Solanum lycopersicum HOM05D004813 ORTHO05D005889 3.5e-95 353.2 533 54.0
Sed0018710 Sechium edule HOM05D004813 ORTHO05D005889 4.6e-95 352.8 551 53.4
SGA_v2.0_scaffold114G31819 Striga asiatica HOM05D004813 ORTHO05D005889 4.6e-95 352.8 604 52.3
Atru.chr8.1447 Acer truncatum HOM05D004813 ORTHO05D005889 1.0e-94 351.7 567 51.3
unitig_0.g15 Utricularia gibba HOM05D004813 ORTHO05D005889 1.0e-94 351.7 533 49.7
Aa31LG1G15060 Aethionema arabicum HOM05D004813 ORTHO05D005889 1.3e-94 351.3 546 50.7
AUR62013092 Chenopodium quinoa HOM05D004813 ORTHO05D005889 1.3e-94 351.3 498 45.8
PGSC0003DMG400018096 Solanum tuberosum HOM05D004813 ORTHO05D005889 3.0e-94 350.1 534 53.4
Prupe.5G171700 Prunus persica HOM05D004813 ORTHO05D005889 3.9e-94 349.7 551 55.0
AL8G44980 Arabidopsis lyrata HOM05D004813 ORTHO05D005889 5.1e-94 349.4 541 53.0
SalBow6G0518 Salvia bowleyana HOM05D004813 ORTHO05D005889 5.1e-94 349.4 572 55.1
Sp2g30180 Schrenkiella parvula HOM05D004813 ORTHO05D005889 5.1e-94 349.4 539 50.8
Medtr4g105590 Medicago truncatula HOM05D004813 ORTHO05D005889 8.7e-94 348.6 556 54.9
Lalb_Chr07g0182801 Lupinus albus HOM05D004813 ORTHO05D005889 2.5e-93 347.1 541 52.3
QL10p010983 Quercus lobata HOM05D004813 ORTHO05D005889 3.3e-93 346.7 577 47.7
ECA232G2493 Erigeron canadensis HOM05D004813 ORTHO05D005889 9.6e-93 345.1 551 47.0
FAN18G4177 Fragaria x ananassa HOM05D004813 ORTHO05D005889 9.6e-93 345.1 535 49.7
Haze_07517 Corylus avellana HOM05D004813 ORTHO05D005889 2.8e-92 343.6 555 51.5
AUR62010096 Chenopodium quinoa HOM05D004813 ORTHO05D005889 1.1e-91 341.7 518 42.9
RcHm_v2.0_Chr7g0193361 Rosa chinensis HOM05D004813 ORTHO05D005889 4.0e-91 339.7 548 48.9
FAN13G1879 Fragaria x ananassa HOM05D004813 ORTHO05D005889 5.8e-90 335.9 533 47.5
ClCG06G017810 Citrullus lanatus HOM05D004813 ORTHO05D005889 1.0e-89 335.1 605 47.3
FAN08G2504 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.7e-89 334.3 543 48.6
FvH4_5g05471 Fragaria vesca HOM05D004813 ORTHO05D005889 2.2e-89 334.0 535 49.9
FAN18G0441 Fragaria x ananassa HOM05D004813 ORTHO05D005889 2.9e-89 333.6 536 48.9
HPP92_018752 Vanilla planifolia HOM05D004813 ORTHO05D005889 4.9e-89 332.8 519 50.1
FAN04G1884 Fragaria x ananassa HOM05D004813 ORTHO05D005889 8.4e-89 332.0 531 45.8
Lj9A420T39 Lonicera japonica HOM05D004813 ORTHO05D005889 1.1e-88 331.6 548 42.9
Aqoxy3G02883 Aquilegia oxysepala HOM05D004813 ORTHO05D005889 3.2e-88 330.1 560 49.5
ATR1091G095 Amborella trichopoda HOM05D004813 ORTHO05D005889 1.0e-86 325.1 534 44.0
EL10Ac9g21440 Beta vulgaris HOM05D004813 ORTHO05D005889 1.3e-86 324.7 572 49.3
Atru.chr9.2495 Acer truncatum HOM05D004813 ORTHO05D005889 3.0e-86 323.6 542 49.6
TPR.G37503 Trifolium pratense HOM05D004813 ORTHO05D005889 2.5e-85 320.5 559 50.4
Nitab4.5_0008678g0020 Nicotiana tabacum HOM05D004813 ORTHO05D005889 4.5e-82 309.7 291 61.9
BraA07t29465Z Brassica rapa HOM05D004813 ORTHO05D005889 1.9e-77 294.3 472 51.3
Haze_17000 Corylus avellana HOM05D004813 ORTHO05D005889 5.7e-77 292.7 538 40.9
MD01G1006000 Malus domestica HOM05D004813 ORTHO05D005889 2.0e-74 284.3 367 55.0
SMO367G0656 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 3.8e-73 280.0 497 48.7
Pp3c4_31210 Physcomitrium patens HOM05D004813 ORTHO05D005889 1.8e-70 271.2 555 45.2
SMO275G0031 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 2.3e-70 270.8 473 41.6
Mapoly0077s0037 Marchantia polymorpha HOM05D004813 ORTHO05D005889 1.5e-69 268.1 541 41.6
Oeu020911.1 Olea europaea HOM05D004813 ORTHO05D005889 1.4e-62 245.0 300 52.3
Ah.01g009190 Amaranthus hybridus HOM05D004813 ORTHO05D005889 1.8e-62 244.6 586 43.5
Psat4g058280 Pisum sativum HOM05D004813 ORTHO05D005889 1.8e-62 244.6 527 35.9
AagrBONN_evm.TU.Sc2ySwM_369.357 Anthoceros agrestis HOM05D004813 ORTHO05D005889 4.8e-60 236.5 547 34.4
CAN.G1166.5 Capsicum annuum HOM05D004813 ORTHO05D005889 1.5e-53 214.9 159 69.8
PGR044G0267 Punica granatum HOM05D004813 ORTHO05D005889 1.1e-51 208.8 147 70.7
arahy.Tifrunner.gnm1.ann1.J34B41 Arachis hypogaea HOM05D004813 ORTHO05D005889 4.5e-50 203.4 205 56.6
CBR_g26354 Chara braunii HOM05D004813 ORTHO05D005889 2.9e-49 200.7 224 49.1
Cre08.g370601 Chlamydomonas reinhardtii HOM05D004813 ORTHO05D005889 6.5e-49 199.5 244 48.0
Actinidia19106 Actinidia chinensis HOM05D004813 ORTHO05D005889 2.5e-48 197.6 125 80.8
Actinidia19105 Actinidia chinensis HOM05D004813 ORTHO05D005889 9.4e-48 195.7 371 46.4
BolC7t43059H Brassica oleracea HOM05D004813 ORTHO05D005889 5.2e-46 189.9 250 46.8
C07p25370 Brassica napus HOM05D004813 ORTHO05D005889 2.1e-39 167.9 243 46.1
BcaC06g34713 Brassica carinata HOM05D004813 ORTHO05D005889 3.0e-38 164.1 188 51.1
BcaNung06644 Brassica carinata HOM05D004813 ORTHO05D005889 3.0e-38 164.1 188 51.1
PRCOL_00002680 Prasinoderma coloniale HOM05D004813 ORTHO05D005889 4.0e-38 163.7 247 40.9
CAN.G1166.4 Capsicum annuum HOM05D004813 ORTHO05D005889 1.0e-30 139.0 384 39.3
SEGI_37748 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 3.2e-27 127.5 379 43.0
SEGI_16864 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 9.2e-27 125.9 103 67.0
Haze_20617 Corylus avellana HOM05D004813 ORTHO05D005889 7.5e-21 106.3 153 46.4
MCO01G452 Micromonas commoda HOM05D004813 ORTHO05D005889 3.5e-18 97.4 250 32.4
MBI14_g23619_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 4.6e-18 97.1 62 79.0
MBI07_g10351_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 6.0e-18 96.7 148 43.9
Lj3g0016907 Lotus japonicus HOM05D004813 ORTHO05D005889 4.0e-14 84.0 62 69.4
MBI05_g41028_MAGBIO Magnolia biondii HOM05D000669 ORTHO05D005889 8.9e-14 82.8 47 89.4
HanXRQChr11g0336351 Helianthus annuus HOM05D004813 ORTHO05D005889 2.9e-12 77.8 77 53.2
Lj6g0012951 Lotus japonicus HOM05D004813 ORTHO05D005889 1.1e-11 75.9 69 60.9
SEGI_40991 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 2.4e-11 74.7 67 58.2
SalBow1G5081 Salvia bowleyana HOM05D004813 ORTHO05D018488 1.7e-09 68.6 59 62.7
arahy.Tifrunner.gnm1.ann1.YI6NTU Arachis hypogaea HOM05D004813 ORTHO05D005889 8.6e-09 66.2 53 67.9
BcaB02g10018 Brassica carinata HOM05D004813 ORTHO05D005889 9.5e-08 62.8 91 40.7
BcaC04g21797 Brassica carinata HOM05D004813 ORTHO05D005889 2.1e-07 61.6 101 40.6
MBI03_g03787_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 2.1e-07 61.6 37 78.4
Mapoly0050s0001 Marchantia polymorpha HOM05D004813 ORTHO05D005889 2.3e-06 58.2 99 40.4
Medtr0130s0060 Medicago truncatula HOM05D003167 ORTHO05D003929 8.9e-06 56.2 36 83.3


User provided reference genes

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