Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os12g0127650 Oryza sativa ssp. japonica HOM05D002005 ORTHO05D003757 0.0e+00 1351.7 737 100.0
Os11g0130800 Oryza sativa ssp. japonica HOM05D002005 ORTHO05D003757 1.6e-223 780.0 438 99.5
Zm00001eb093510 Zea mays HOM05D002005 ORTHO05D003757 4.1e-78 297.0 779 35.7
Ca_03430_v3 Cicer arietinum L. HOM05D002005 ORTHO05D003757 1.6e-29 135.6 475 28.8
MBI19_g06602_MAGBIO Magnolia biondii HOM05D002005 ORTHO05D003757 2.7e-29 134.8 700 27.7
TAR369G0234 Trochodendron aralioides HOM05D002005 ORTHO05D003757 3.5e-29 134.4 446 29.8
Aqoxy3G00499 Aquilegia oxysepala HOM05D002005 ORTHO05D003757 1.0e-28 132.9 455 27.5
Zm00001eb150130 Zea mays HOM05D002005 ORTHO05D003757 5.6e-27 127.1 518 28.8
TAR623G1062 Trochodendron aralioides HOM05D002005 ORTHO05D003757 1.4e-25 122.5 547 28.5
Nn7g38016 Nelumbo nucifera HOM05D002005 ORTHO05D003757 4.0e-25 120.9 458 29.7
Sabra19G0054900 Salix brachista HOM05D002005 ORTHO05D003757 6.8e-25 120.2 448 27.9
Zm00001eb150100 Zea mays HOM05D002005 ORTHO05D003757 1.2e-24 119.4 518 27.8
Dinv37045 Davidia involucrata HOM05D002005 ORTHO05D003757 1.5e-24 119.0 467 27.2
Actinidia37843 Actinidia chinensis HOM05D002005 ORTHO05D003757 4.4e-24 117.5 465 26.7
Os01g0812050 Oryza sativa ssp. japonica HOM05D002005 ORTHO05D003757 7.6e-24 116.7 533 26.8
BraA10t44218Z Brassica rapa HOM05D002005 ORTHO05D003757 1.3e-23 115.9 457 27.1
Glyma.19G121300 Glycine max HOM05D002005 ORTHO05D003757 3.2e-22 111.3 459 27.5
Glyma.03G004800 Glycine max HOM05D002005 ORTHO05D003757 4.1e-22 110.9 456 27.2
MD05G1057800 Malus domestica HOM05D002005 ORTHO05D003757 9.2e-22 109.8 527 25.6
THA.LOC104820809 Tarenaya hassleriana HOM05D002005 ORTHO05D003757 1.2e-21 109.4 464 26.3
CSS0037844 Camellia sinensis var. sinensis HOM05D002005 ORTHO05D003757 2.7e-21 108.2 467 25.7
RhsimUnG0023200 Rhododendron simsii HOM05D002005 ORTHO05D003757 6.0e-21 107.1 463 24.8
BcaC04g18741 Brassica carinata HOM05D002005 ORTHO05D003757 1.7e-20 105.5 465 26.2
BolC9t58754H Brassica oleracea HOM05D002005 ORTHO05D003757 1.7e-20 105.5 465 26.2
Cfa019886 Carpinus fangiana HOM05D002005 ORTHO05D003757 1.7e-20 105.5 464 28.2
A10p21570 Brassica napus HOM05D002005 ORTHO05D003757 3.9e-20 104.4 433 27.0
Lalb_Chr14g0365081 Lupinus albus HOM05D002005 ORTHO05D003757 3.9e-20 104.4 464 26.5
Duzib177G0589 Durio zibethinus HOM05D002005 ORTHO05D003757 6.6e-20 103.6 475 24.2
Manes.08G155700 Manihot esculenta HOM05D002005 ORTHO05D003757 1.1e-19 102.8 455 25.9
Medtr7g087490 Medicago truncatula HOM05D002005 ORTHO05D003757 1.5e-19 102.4 477 26.2
Psat3g084320 Pisum sativum HOM05D002005 ORTHO05D003757 1.5e-19 102.4 513 25.9
VMungo1383G0221 Vigna mungo HOM05D002005 ORTHO05D003757 2.5e-19 101.7 447 28.2
Carub.0006s1612 Capsella rubella HOM05D002005 ORTHO05D003757 3.3e-19 101.3 471 25.9
Oeu044220.1 Olea europaea HOM05D002005 ORTHO05D003757 3.3e-19 101.3 482 24.9
Cc00_g08730 Coffea canephora HOM05D002005 ORTHO05D003757 4.3e-19 100.9 476 25.0
Prupe.7G025700 Prunus persica HOM05D002005 ORTHO05D003757 4.3e-19 100.9 482 25.3
C09p59060 Brassica napus HOM05D002005 ORTHO05D003757 5.6e-19 100.5 457 26.3
C09p59080 Brassica napus HOM05D002005 ORTHO05D003757 5.6e-19 100.5 457 26.3
Prupe.8G087600 Prunus persica HOM05D002005 ORTHO05D003757 7.3e-19 100.1 713 24.4
TPR.G23643 Trifolium pratense HOM05D002005 ORTHO05D003757 7.3e-19 100.1 473 26.0
HPP92_005921 Vanilla planifolia HOM05D002005 ORTHO05D003757 9.6e-19 99.8 580 24.3
Haze_20366 Corylus avellana HOM05D002005 ORTHO05D003757 1.6e-18 99.0 465 27.5
ClCG09G013260 Citrullus lanatus HOM05D002005 ORTHO05D003757 6.2e-18 97.1 487 24.8
Peaxi162Scf00003g05364 Petunia axillaris HOM05D002005 ORTHO05D003757 6.2e-18 97.1 474 26.2
Phvul.001G101800 Phaseolus vulgaris HOM05D002005 ORTHO05D003757 8.1e-18 96.7 449 26.3
Potri.013G068800 Populus trichocarpa HOM05D002005 ORTHO05D003757 8.1e-18 96.7 454 26.0
Sc22g0002340 Simmondsia chinensis HOM05D002005 ORTHO05D003757 6.8e-17 93.6 498 26.9
SGA_v2.0_scaffold66G22332 Striga asiatica HOM05D002005 ORTHO05D003757 8.9e-17 93.2 447 30.6
unitig_21.g20665 Utricularia gibba HOM05D002005 ORTHO05D003757 8.9e-17 93.2 463 26.6
Atru.chr2.1605 Acer truncatum HOM05D002005 ORTHO05D003757 1.5e-16 92.4 466 23.2
FAN20G0782 Fragaria x ananassa HOM05D002005 ORTHO05D003757 1.5e-16 92.4 466 26.4
Potri.019G044500 Populus trichocarpa HOM05D002005 ORTHO05D003757 1.5e-16 92.4 459 25.7
Oeu023030.1 Olea europaea HOM05D002005 ORTHO05D003757 2.0e-16 92.0 438 23.5
SalBow6G5301 Salvia bowleyana HOM05D002005 ORTHO05D003757 2.6e-16 91.7 463 23.8
SalBow6G5969 Salvia bowleyana HOM05D002005 ORTHO05D003757 2.6e-16 91.7 463 23.8
BcaB08g36725 Brassica carinata HOM05D002005 ORTHO05D003757 3.4e-16 91.3 462 25.5
MSTRG.19759 Avicennia marina HOM05D002005 ORTHO05D003757 4.4e-16 90.9 442 25.3
Sed0026327 Sechium edule HOM05D002005 ORTHO05D003757 9.9e-16 89.7 536 25.0
THA.LOC104802888 Tarenaya hassleriana HOM05D002005 ORTHO05D003757 1.3e-15 89.4 481 24.3
Lj1P1075T62 Lonicera japonica HOM05D002005 ORTHO05D003757 2.9e-15 88.2 467 25.7
FAN19G0929 Fragaria x ananassa HOM05D002005 ORTHO05D003757 3.8e-15 87.8 466 25.1
QL07p015943 Quercus lobata HOM05D002005 ORTHO05D003757 3.8e-15 87.8 473 23.7
Eucgr.A02165 Eucalyptus grandis HOM05D002005 ORTHO05D003757 4.9e-15 87.4 473 23.5
Thhalv10012439m.g Eutrema salsugineum HOM05D002005 ORTHO05D003757 4.9e-15 87.4 452 23.9
TWI34G0003 Tripterygium wilfordii HOM05D002005 ORTHO05D003757 4.9e-15 87.4 451 26.2
arahy.Tifrunner.gnm1.ann1.QNMS29 Arachis hypogaea HOM05D002005 ORTHO05D003757 6.4e-15 87.0 456 24.6
FvH4_1g29420 Fragaria vesca HOM05D002005 ORTHO05D003757 6.4e-15 87.0 465 26.7
arahy.Tifrunner.gnm1.ann1.M37KEN Arachis hypogaea HOM05D002005 ORTHO05D003757 8.4e-15 86.7 458 24.7
FAN28G0247 Fragaria x ananassa HOM05D002005 ORTHO05D003757 1.1e-14 86.3 465 26.7
MBI13_g15011_MAGBIO Magnolia biondii HOM05D002005 ORTHO05D003757 1.1e-14 86.3 477 26.2
RcHm_v2.0_Chr3g0495491 Rosa chinensis HOM05D002005 ORTHO05D003757 1.1e-14 86.3 440 24.5
Sopen10g031700 Solanum pennellii HOM05D002005 ORTHO05D003757 1.1e-14 86.3 498 24.5
Manes.09G134400 Manihot esculenta HOM05D002005 ORTHO05D003757 1.9e-14 85.5 451 25.1
BcaB01g05164 Brassica carinata HOM05D002005 ORTHO05D003757 2.4e-14 85.1 471 24.2
BolC3t13486H Brassica oleracea HOM05D002005 ORTHO05D003757 2.4e-14 85.1 471 24.2
PSO339G2450 Papaver somniferum HOM05D002005 ORTHO05D003757 3.2e-14 84.7 719 22.7
Migut.J01577 Erythranthe guttata HOM05D002005 ORTHO05D003757 4.2e-14 84.3 515 24.7
HPP92_008478 Vanilla planifolia HOM05D002005 ORTHO05D003757 4.2e-14 84.3 188 35.6
C03p09980 Brassica napus HOM05D002005 ORTHO05D003757 7.1e-14 83.6 469 24.1
Duzib128G1593 Durio zibethinus HOM05D002005 ORTHO05D003757 7.1e-14 83.6 473 24.1
Nitab4.5_0000123g0050 Nicotiana tabacum HOM05D002005 ORTHO05D003757 7.1e-14 83.6 473 25.6
MSTRG.6275 Avicennia marina HOM05D002005 ORTHO05D003757 9.3e-14 83.2 531 24.7
CANSAT78G2106 Cannabis sativa HOM05D002005 ORTHO05D003757 9.3e-14 83.2 508 24.2
FvH4_2g10091 Fragaria vesca HOM05D002005 ORTHO05D003757 1.2e-13 82.8 450 25.6
Gorai.007G250800 Gossypium raimondii HOM05D002005 ORTHO05D003757 1.2e-13 82.8 449 24.7
GSVIVG01029896001 Vitis vinifera HOM05D002005 ORTHO05D003757 1.2e-13 82.8 430 26.5
A03p08550 Brassica napus HOM05D002005 ORTHO05D003757 1.6e-13 82.4 484 23.1
ECA236G4805 Erigeron canadensis HOM05D002005 ORTHO05D003757 1.6e-13 82.4 440 27.5
Cpa.g.sc73.39 Carica papaya HOM05D002005 ORTHO05D003757 2.1e-13 82.0 464 24.8
CiPaw.09G053000 Carya illinoinensis HOM05D002005 ORTHO05D003757 2.1e-13 82.0 476 27.5
AL1G51410 Arabidopsis lyrata HOM05D002005 ORTHO05D003757 3.5e-13 81.3 477 24.3
CiPaw.10G044600 Carya illinoinensis HOM05D002005 ORTHO05D003757 3.5e-13 81.3 500 28.6
Gohir.D11G237400 Gossypium hirsutum HOM05D002005 ORTHO05D003757 3.5e-13 81.3 454 23.6
FAN27G2381 Fragaria x ananassa HOM05D002005 ORTHO05D003757 4.6e-13 80.9 486 25.7
Nitab4.5_0007999g0010 Nicotiana tabacum HOM05D002005 ORTHO05D003757 4.6e-13 80.9 463 26.1
PSO801G0543 Papaver somniferum HOM05D002005 ORTHO05D003757 4.6e-13 80.9 651 23.5
Solyc10g081200.1 Solanum lycopersicum HOM05D002005 ORTHO05D003757 4.6e-13 80.9 501 29.1
BraA03t10181Z Brassica rapa HOM05D002005 ORTHO05D003757 6.0e-13 80.5 469 23.7
TWI32G1337 Tripterygium wilfordii HOM05D002005 ORTHO05D003757 6.0e-13 80.5 456 24.1
CAN.G128.110 Capsicum annuum HOM05D002005 ORTHO05D003757 7.8e-13 80.1 524 29.0
Sed0005780 Sechium edule HOM05D002005 ORTHO05D003757 7.8e-13 80.1 451 29.3
PGSC0003DMG400028204 Solanum tuberosum HOM05D002005 ORTHO05D003757 1.3e-12 79.3 507 26.4
Solyc10g076650.3 Solanum lycopersicum HOM05D002005 ORTHO05D003757 1.7e-12 79.0 466 24.5
Aa31LG11G11930 Aethionema arabicum HOM05D002005 ORTHO05D003757 2.3e-12 78.6 448 23.7
Peaxi162Scf00153g01023 Petunia axillaris HOM05D002005 ORTHO05D003757 2.3e-12 78.6 482 23.2
Gohir.A13G097000 Gossypium hirsutum HOM05D002005 ORTHO05D003757 3.9e-12 77.8 481 24.5
PSO210G7347 Papaver somniferum HOM05D002005 ORTHO05D003757 3.9e-12 77.8 497 27.2
CARHR195210 Cardamine hirsuta HOM05D002005 ORTHO05D003757 5.1e-12 77.4 458 25.1
Sopen10g028680 Solanum pennellii HOM05D002005 ORTHO05D003757 5.1e-12 77.4 449 24.3
Hund15172 Selenicereus undatus HOM05D002005 ORTHO05D003757 6.6e-12 77.0 196 31.1
PGSC0003DMG400019177 Solanum tuberosum HOM05D002005 ORTHO05D003757 8.7e-12 76.6 442 24.2
Migut.N01846 Erythranthe guttata HOM05D002005 ORTHO05D003757 1.1e-11 76.3 459 29.6
Sp6g26360 Schrenkiella parvula HOM05D002005 ORTHO05D003757 1.1e-11 76.3 453 23.6
Duzib106G2027 Durio zibethinus HOM05D002005 ORTHO05D003757 1.9e-11 75.5 460 24.1
FAN15G1233 Fragaria x ananassa HOM05D002005 ORTHO05D003757 1.9e-11 75.5 466 24.5
FAN24G1358 Fragaria x ananassa HOM05D002005 ORTHO05D003757 1.9e-11 75.5 431 25.1
BcaB01g04923 Brassica carinata HOM05D002005 ORTHO05D003757 2.5e-11 75.1 462 23.8
Sopen10g028260 Solanum pennellii HOM05D002005 ORTHO05D003757 3.3e-11 74.7 425 25.2
AT5G17910 Arabidopsis thaliana HOM05D002005 ORTHO05D003757 4.3e-11 74.3 452 22.8
Nn2g11384 Nelumbo nucifera HOM05D002005 ORTHO05D003757 5.6e-11 73.9 435 23.9
RcHm_v2.0_Chr6g0267051 Rosa chinensis HOM05D002005 ORTHO05D003757 5.6e-11 73.9 465 24.1
FAN26G2169 Fragaria x ananassa HOM05D002005 ORTHO05D003757 7.3e-11 73.6 740 22.6
Gorai.013G114300 Gossypium raimondii HOM05D002005 ORTHO05D003757 9.6e-11 73.2 487 23.2
Nitab4.5_0000062g0420 Nicotiana tabacum HOM05D002005 ORTHO05D003757 9.6e-11 73.2 182 35.7
CDE09G1138 Ceratophyllum demersum HOM05D002005 ORTHO05D003757 1.3e-10 72.8 180 33.3
Gohir.D13G102100 Gossypium hirsutum HOM05D002005 ORTHO05D003757 1.6e-10 72.4 471 22.3
Oeu060743.1 Olea europaea HOM05D002005 ORTHO05D003757 1.6e-10 72.4 456 24.3
PSO532G0028 Papaver somniferum HOM05D002005 ORTHO05D003757 1.6e-10 72.4 268 29.5
SGA_v2.0_scaffold240G44144 Striga asiatica HOM05D002005 ORTHO05D003757 2.1e-10 72.0 476 24.8
ClCG04G004830 Citrullus lanatus HOM05D002005 ORTHO05D003757 2.8e-10 71.6 480 28.8
Gohir.A13G160000 Gossypium hirsutum HOM05D002005 ORTHO05D003757 4.8e-10 70.9 491 23.8
ATR0307G088 Amborella trichopoda HOM05D002005 ORTHO05D003757 1.1e-09 69.7 476 25.0
CDE08G0232 Ceratophyllum demersum HOM05D002005 ORTHO05D003757 1.1e-09 69.7 447 24.4
Os07g0472300 Oryza sativa ssp. japonica HOM05D002005 ORTHO05D003757 1.1e-09 69.7 176 31.8
Aqoxy4G02664 Aquilegia oxysepala HOM05D002005 ORTHO05D003757 1.8e-09 68.9 427 24.6
PSO210G3936 Papaver somniferum HOM05D002005 ORTHO05D003757 4.0e-09 67.8 497 26.8
MD14G1012900 Malus domestica HOM05D002005 ORTHO05D003757 5.3e-09 67.4 850 21.2
PSO541G2770 Papaver somniferum HOM05D002005 ORTHO05D003757 6.9e-09 67.0 209 30.6
AUR62037108 Chenopodium quinoa HOM05D002005 ORTHO05D003757 9.0e-09 66.6 175 34.3
DCAR_020635 Daucus carota HOM05D002005 ORTHO05D003757 2.6e-08 65.1 454 22.5
Gohir.D13G165200 Gossypium hirsutum HOM05D002005 ORTHO05D003757 3.4e-08 64.7 494 22.3
Ciclev10030490m.g Citrus clementina HOM05D002005 ORTHO05D003757 9.9e-08 63.2 194 28.4
CsaV3_4G031680 Cucumis sativus L. HOM05D002005 ORTHO05D003757 9.9e-08 63.2 471 23.4
EL10Ac9g21403 Beta vulgaris HOM05D002005 ORTHO05D003757 1.3e-07 62.8 104 35.6
Gorai.013G197500 Gossypium raimondii HOM05D002005 ORTHO05D003757 1.3e-07 62.8 491 23.0
Ah.13g070760 Amaranthus hybridus HOM05D002005 ORTHO05D003757 4.9e-07 60.8 546 22.3
MELO3C008875.2 Cucumis melo HOM05D002005 ORTHO05D003757 4.9e-07 60.8 477 23.5
HanXRQChr00c0297g0573161 Helianthus annuus HOM05D002005 ORTHO05D003757 4.9e-07 60.8 393 22.9
PGR042G3731 Punica granatum HOM05D002005 ORTHO05D003757 6.4e-07 60.5 458 23.6
Solyc10g076995.1 Solanum lycopersicum HOM05D002005 ORTHO05D003757 6.4e-07 60.5 309 23.3
Os05g0490400 Oryza sativa ssp. japonica HOM05D002005 ORTHO05D003757 8.4e-07 60.1 453 23.4
Prupe.6G060900 Prunus persica HOM05D002005 ORTHO05D006330 1.1e-06 59.7 251 28.7
AUR62042367 Chenopodium quinoa HOM05D002005 ORTHO05D003757 1.9e-06 58.9 152 35.5
AUR62018799 Chenopodium quinoa HOM05D002005 ORTHO05D003757 2.4e-06 58.5 394 24.6
Duzib128G1239 Durio zibethinus HOM05D002005 ORTHO05D003757 2.4e-06 58.5 417 22.3
Lsat_1_v5_gn_8_85341 Lactuca sativa HOM05D002005 ORTHO05D003757 2.4e-06 58.5 447 24.2
Nitab4.5_0003808g0050 Nicotiana tabacum HOM05D002005 ORTHO05D003757 5.4e-06 57.4 499 26.3
TWI79G1268 Tripterygium wilfordii HOM05D002005 ORTHO05D006330 7.1e-06 57.0 127 32.3


User provided reference genes

Program Settings