Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os12g0111900 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 1.1e-58 229.9 134 100.0
Os11g0112300 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 3.3e-34 148.7 99 80.8
Os12g0416500 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 7.0e-29 131.0 93 75.3
SGA_v2.0_scaffold77G25373 Striga asiatica HOM05D002376 ORTHO05D008821 4.1e-21 105.1 96 55.2
Zm00001eb276260 Zea mays HOM05D002376 ORTHO05D008821 2.1e-20 102.8 73 68.5
FAN16G0225 Fragaria x ananassa HOM05D002376 ORTHO05D008821 2.7e-20 102.4 105 50.5
FAN21G3738 Fragaria x ananassa HOM05D002376 ORTHO05D008821 6.0e-20 101.3 108 49.1
Dinv12257 Davidia involucrata HOM05D002376 ORTHO05D008821 1.7e-19 99.8 111 51.4
Aqoxy4G02143 Aquilegia oxysepala HOM05D002376 ORTHO05D008821 2.3e-19 99.4 92 56.5
TAR623G0666 Trochodendron aralioides HOM05D002376 ORTHO05D008821 2.3e-19 99.4 98 54.1
CiPaw.13G066200 Carya illinoinensis HOM05D002376 ORTHO05D008821 3.0e-19 99.0 94 55.3
PGR102G2282 Punica granatum HOM05D002376 ORTHO05D008821 3.0e-19 99.0 99 52.5
TAR287G0002 Trochodendron aralioides HOM05D002376 ORTHO05D008821 3.0e-19 99.0 98 55.1
Haze_24442 Corylus avellana HOM05D002376 ORTHO05D008821 3.9e-19 98.6 94 55.3
COL.COLO4_11185 Corchorus olitorius HOM05D002376 ORTHO05D008821 6.6e-19 97.8 101 51.5
Cfa010938 Carpinus fangiana HOM05D002376 ORTHO05D008821 8.6e-19 97.4 94 54.3
Sc06g0008070 Simmondsia chinensis HOM05D002376 ORTHO05D008821 8.6e-19 97.4 96 52.1
BcaB01g04113 Brassica carinata HOM05D002376 ORTHO05D008821 1.1e-18 97.1 98 51.0
FvH4_3g40170 Fragaria vesca HOM05D002376 ORTHO05D008821 1.1e-18 97.1 98 51.0
Manes.18G140300 Manihot esculenta HOM05D002376 ORTHO05D008821 1.1e-18 97.1 94 53.2
THA.LOC104800780 Tarenaya hassleriana HOM05D002376 ORTHO05D008821 1.1e-18 97.1 98 51.0
CANSAT54G2364 Cannabis sativa HOM05D002376 ORTHO05D008821 1.9e-18 96.3 94 52.1
A03p16960 Brassica napus HOM05D002376 ORTHO05D004654 2.5e-18 95.9 98 50.0
Carub.0004s1148 Capsella rubella HOM05D002376 ORTHO05D008821 2.5e-18 95.9 98 50.0
Gohir.D03G144300 Gossypium hirsutum HOM05D002376 ORTHO05D008821 2.5e-18 95.9 96 56.2
Gorai.003G151600 Gossypium raimondii HOM05D002376 ORTHO05D008821 2.5e-18 95.9 96 56.2
GSVIVG01024598001 Vitis vinifera HOM05D002376 ORTHO05D008821 2.5e-18 95.9 92 54.3
CARHR123650 Cardamine hirsuta HOM05D002376 ORTHO05D008821 3.3e-18 95.5 98 51.0
COL.COLO4_11184 Corchorus olitorius HOM05D002376 ORTHO05D008821 3.3e-18 95.5 98 51.0
Duzib168G1911 Durio zibethinus HOM05D002376 ORTHO05D008821 3.3e-18 95.5 98 51.0
Eucgr.B04014 Eucalyptus grandis HOM05D002376 ORTHO05D008821 4.3e-18 95.1 95 50.5
Eucgr.B04017 Eucalyptus grandis HOM05D002376 ORTHO05D008821 4.3e-18 95.1 95 50.5
HanXRQChr01g0012551 Helianthus annuus HOM05D002376 ORTHO05D008821 4.3e-18 95.1 98 46.9
FAN11G0211 Fragaria x ananassa HOM05D002376 ORTHO05D008821 5.6e-18 94.7 98 50.0
Rhsim13G0061900 Rhododendron simsii HOM05D002376 ORTHO05D008821 5.6e-18 94.7 95 50.5
Thecc.09G361000 Theobroma cacao HOM05D002376 ORTHO05D008821 7.3e-18 94.4 98 49.0
Actinidia23182 Actinidia chinensis HOM05D002376 ORTHO05D008821 9.5e-18 94.0 94 52.1
BcaC01g05988 Brassica carinata HOM05D002376 ORTHO05D008821 9.5e-18 94.0 92 51.1
C03p19980 Brassica napus HOM05D002376 ORTHO05D004654 9.5e-18 94.0 92 51.1
BolC3t14376H Brassica oleracea HOM05D002376 ORTHO05D004654 9.5e-18 94.0 92 51.1
Thhalv10017367m.g Eutrema salsugineum HOM05D002376 ORTHO05D008821 9.5e-18 94.0 98 49.0
RcHm_v2.0_Chr5g0072361 Rosa chinensis HOM05D002376 ORTHO05D008821 9.5e-18 94.0 98 49.0
CSS0003249 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 1.2e-17 93.6 94 51.1
CSS0017661 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 1.2e-17 93.6 94 51.1
Prupe.6G044100 Prunus persica HOM05D002376 ORTHO05D008821 1.2e-17 93.6 100 47.0
SalBow2G0685 Salvia bowleyana HOM05D002376 ORTHO05D008821 1.2e-17 93.6 94 48.9
Sp4g12890 Schrenkiella parvula HOM05D002376 ORTHO05D008821 1.2e-17 93.6 92 51.1
Migut.H01101 Erythranthe guttata HOM05D002376 ORTHO05D008821 1.6e-17 93.2 94 50.0
MD11G1061300 Malus domestica HOM05D002376 ORTHO05D008821 1.6e-17 93.2 98 48.0
Dinv28710 Davidia involucrata HOM05D002376 ORTHO05D008821 2.1e-17 92.8 94 52.1
Nn4g26021 Nelumbo nucifera HOM05D002376 ORTHO05D008821 2.1e-17 92.8 102 49.0
Cpa.g.sc2.331 Carica papaya HOM05D002376 ORTHO05D008821 2.8e-17 92.4 100 48.0
Gohir.A03G024200 Gossypium hirsutum HOM05D002376 ORTHO05D008821 2.8e-17 92.4 96 55.2
Aa31LG5G6370 Aethionema arabicum HOM05D002376 ORTHO05D008821 3.6e-17 92.0 98 48.0
MELO3C025682.2 Cucumis melo HOM05D002376 ORTHO05D008821 3.6e-17 92.0 99 48.5
PSO170G0682 Papaver somniferum HOM05D002376 ORTHO05D008821 3.6e-17 92.0 95 49.5
Lj1A123G47 Lonicera japonica HOM05D002376 ORTHO05D008821 4.7e-17 91.7 94 52.1
vmacro02895 Vaccinium macrocarpon HOM05D002376 ORTHO05D008821 6.2e-17 91.3 94 48.9
CSS0028475 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 8.1e-17 90.9 94 50.0
ATR0586G003 Amborella trichopoda HOM05D002376 ORTHO05D008821 1.1e-16 90.5 97 51.5
CsaV3_6G019000 Cucumis sativus L. HOM05D002376 ORTHO05D008821 1.1e-16 90.5 94 50.0
Lsat_1_v5_gn_5_175460 Lactuca sativa HOM05D002376 ORTHO05D008821 1.1e-16 90.5 92 47.8
SalBow2G2295 Salvia bowleyana HOM05D002376 ORTHO05D008821 1.1e-16 90.5 94 47.9
ClCG02G019170 Citrullus lanatus HOM05D002376 ORTHO05D008821 1.4e-16 90.1 94 48.9
DCAR_014464 Daucus carota HOM05D002376 ORTHO05D008821 1.4e-16 90.1 92 47.8
Phvul.008G249600 Phaseolus vulgaris HOM05D002376 ORTHO05D008821 1.4e-16 90.1 99 49.5
TWI75G1859 Tripterygium wilfordii HOM05D002376 ORTHO05D008821 1.4e-16 90.1 92 50.0
Cc01_g09100 Coffea canephora HOM05D002376 ORTHO05D008821 1.8e-16 89.7 94 51.1
Glyma.02G234100 Glycine max HOM05D002376 ORTHO05D008821 1.8e-16 89.7 99 49.5
AL4G25190 Arabidopsis lyrata HOM05D002376 ORTHO05D008821 2.3e-16 89.4 98 46.9
AT2G30330 Arabidopsis thaliana HOM05D002376 ORTHO05D008821 2.3e-16 89.4 92 48.9
Ciclev10017044m.g Citrus clementina HOM05D002376 ORTHO05D008821 2.3e-16 89.4 97 50.5
QL03p067094 Quercus lobata HOM05D002376 ORTHO05D008821 2.3e-16 89.4 94 52.1
HPP92_009016 Vanilla planifolia HOM05D002376 ORTHO05D008821 3.1e-16 89.0 92 48.9
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 3.1e-16 89.0 99 48.5
CDE06G1730 Ceratophyllum demersum HOM05D002376 ORTHO05D008821 6.8e-16 87.8 92 46.7
Eucgr.B02271 Eucalyptus grandis HOM05D002376 ORTHO05D008821 6.8e-16 87.8 73 57.5
Eucgr.L02725 Eucalyptus grandis HOM05D002376 ORTHO05D008821 6.8e-16 87.8 73 57.5
PSO017G2121 Papaver somniferum HOM05D002376 ORTHO05D008821 8.9e-16 87.4 95 47.4
LjContig00141g0012114 Lotus japonicus HOM05D002376 ORTHO05D008821 1.5e-15 86.7 92 50.0
Sabra13G0126300 Salix brachista HOM05D002376 ORTHO05D008821 1.5e-15 86.7 97 48.5
Atru.chr6.2418 Acer truncatum HOM05D002376 ORTHO05D008821 2.0e-15 86.3 98 46.9
Ca_05691_v3 Cicer arietinum L. HOM05D002376 ORTHO05D008821 2.0e-15 86.3 99 46.5
Oeu064671.1 Olea europaea HOM05D000883 ORTHO05D002942 2.0e-15 86.3 92 50.0
unitig_22.g5204 Utricularia gibba HOM05D006159 ORTHO05D007624 2.0e-15 86.3 95 45.3
Potri.013G156700 Populus trichocarpa HOM05D002376 ORTHO05D008821 2.6e-15 85.9 95 48.4
arahy.Tifrunner.gnm1.ann1.6WW78Y Arachis hypogaea HOM05D002376 ORTHO05D008821 5.8e-15 84.7 95 46.3
Hund18966 Selenicereus undatus HOM05D002376 ORTHO05D008821 5.8e-15 84.7 98 44.9
Sed0011436 Sechium edule HOM05D002376 ORTHO05D008821 7.6e-15 84.3 99 45.5
Nitab4.5_0000755g0130 Nicotiana tabacum HOM05D002376 ORTHO05D008821 9.9e-15 84.0 92 47.8
Medtr5g074880 Medicago truncatula HOM05D002376 ORTHO05D008821 2.2e-14 82.8 92 47.8
Peaxi162Scf00003g00413 Petunia axillaris HOM05D002376 ORTHO05D008821 2.2e-14 82.8 92 46.7
TPR.G17753 Trifolium pratense HOM05D002376 ORTHO05D008821 2.9e-14 82.4 92 47.8
arahy.Tifrunner.gnm1.ann1.F02FPT Arachis hypogaea HOM05D002376 ORTHO05D008821 4.9e-14 81.6 92 45.7
MBI15_g06972_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 6.4e-14 81.3 91 49.5
Nitab4.5_0009324g0020 Nicotiana tabacum HOM05D002376 ORTHO05D008821 6.4e-14 81.3 92 46.7
Solyc11g068450.2 Solanum lycopersicum HOM05D002376 ORTHO05D008821 6.4e-14 81.3 92 46.7
Sopen11g027160 Solanum pennellii HOM05D002376 ORTHO05D008821 6.4e-14 81.3 92 46.7
Psat2g052040 Pisum sativum HOM05D002376 ORTHO05D008821 1.4e-13 80.1 69 53.6
PGSC0003DMG400026358 Solanum tuberosum HOM05D002376 ORTHO05D008821 1.4e-13 80.1 92 45.7
MBI07_g35969_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 4.1e-13 78.6 76 50.0
Lalb_Chr10g0103701 Lupinus albus HOM05D002376 ORTHO05D008821 1.6e-12 76.6 92 43.5
Actinidia32596 Actinidia chinensis HOM05D002376 ORTHO05D008821 3.5e-12 75.5 70 51.4
Lalb_Chr17g0345531 Lupinus albus HOM05D002376 ORTHO05D008821 3.5e-12 75.5 92 42.4
Pp3c20_8500 Physcomitrium patens HOM05D002376 ORTHO05D008821 7.8e-12 74.3 94 40.4
CAN.G1358.8 Capsicum annuum HOM05D002376 ORTHO05D008821 1.0e-11 73.9 70 50.0
AUR62009722 Chenopodium quinoa HOM05D002376 ORTHO05D008821 1.0e-11 73.9 92 39.1
AUR62036225 Chenopodium quinoa HOM05D002376 ORTHO05D008821 5.1e-11 71.6 84 40.5
EL10Ac7g15863 Beta vulgaris HOM05D002376 ORTHO05D008821 6.6e-11 71.2 92 37.0
Prupe.6G095400 Prunus persica HOM05D002376 ORTHO05D008821 8.6e-11 70.9 92 41.3
Ah.15g096510 Amaranthus hybridus HOM05D002376 ORTHO05D008821 1.5e-10 70.1 98 36.7
AagrBONN_evm.TU.Sc2ySwM_228.448 Anthoceros agrestis HOM05D002376 ORTHO05D008821 4.3e-10 68.6 96 40.6
Mapoly0069s0031 Marchantia polymorpha HOM05D002376 ORTHO05D008821 2.1e-09 66.2 69 47.8
CBR_g4891 Chara braunii HOM05D006348 ORTHO05D008261 4.0e-08 62.0 73 35.6
SMO361G0428 Selaginella moellendorffii HOM05D002376 ORTHO05D008821 4.0e-08 62.0 89 34.8
SHI19244 Sapria himalayana HOM05D002376 ORTHO05D008821 2.6e-07 59.3 101 38.6
MD03G1059100 Malus domestica HOM05D002376 ORTHO05D008821 9.9e-07 57.4 104 39.4


User provided reference genes

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