Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os12g0102350 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 8.2e-137 490.3 240 100.0
Os11g0102700 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 8.5e-134 480.3 241 98.3
Zm00001eb413910 Zea mays HOM05D004427 ORTHO05D005381 8.0e-84 314.3 235 68.9
Os12g0127600 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 2.4e-51 206.5 230 50.9
MSTRG.21151 Avicennia marina HOM05D004427 ORTHO05D005381 3.3e-45 186.0 219 41.6
Ciclev10029217m.g Citrus clementina HOM05D004427 ORTHO05D005381 7.4e-45 184.9 230 42.6
Aqoxy4G03193 Aquilegia oxysepala HOM05D004427 ORTHO05D005381 1.3e-44 184.1 223 44.4
CSS0010329 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.3e-44 184.1 223 41.3
Medtr4g061080 Medicago truncatula HOM05D004427 ORTHO05D005381 2.1e-44 183.3 239 39.7
vmacro14479 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 2.1e-44 183.3 227 43.2
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 4.8e-44 182.2 219 44.7
Oeu062268.1 Olea europaea HOM05D004427 ORTHO05D005381 4.8e-44 182.2 222 43.2
PGSC0003DMG400013475 Solanum tuberosum HOM05D004427 ORTHO05D005381 4.8e-44 182.2 220 43.6
THA.LOC104799482 Tarenaya hassleriana HOM05D004427 ORTHO05D005381 4.8e-44 182.2 226 46.5
TPR.G2989 Trifolium pratense HOM05D004427 ORTHO05D005381 4.8e-44 182.2 234 42.7
ECA233G4215 Erigeron canadensis HOM05D004427 ORTHO05D005381 6.2e-44 181.8 219 42.9
HanXRQChr02g0051371 Helianthus annuus HOM05D004427 ORTHO05D005381 6.2e-44 181.8 219 41.1
Manes.04G026600 Manihot esculenta HOM05D004427 ORTHO05D005381 8.1e-44 181.4 230 42.2
CsaV3_6G021480 Cucumis sativus L. HOM05D004427 ORTHO05D005381 1.1e-43 181.0 230 41.7
Sopen05g001320 Solanum pennellii HOM05D004427 ORTHO05D005381 1.1e-43 181.0 225 43.1
Hma1.2p1_2156F.1_g315430 Hydrangea macrophylla HOM05D004427 ORTHO05D005381 1.4e-43 180.6 221 42.1
Sed0015128 Sechium edule HOM05D004427 ORTHO05D005381 1.8e-43 180.3 222 41.9
Eucgr.J00959 Eucalyptus grandis HOM05D004427 ORTHO05D005381 2.4e-43 179.9 229 43.7
Dinv10838 Davidia involucrata HOM05D004427 ORTHO05D005381 3.1e-43 179.5 221 42.5
Migut.N02630 Erythranthe guttata HOM05D004427 ORTHO05D005381 3.1e-43 179.5 220 40.0
Rhsim01G0221200 Rhododendron simsii HOM05D004427 ORTHO05D005381 3.1e-43 179.5 221 43.0
ClCG02G020830 Citrullus lanatus HOM05D004427 ORTHO05D005381 4.0e-43 179.1 232 42.2
MELO3C025732.2 Cucumis melo HOM05D004427 ORTHO05D005381 4.0e-43 179.1 232 42.2
CAN.G765.37 Capsicum annuum HOM05D004427 ORTHO05D005381 5.3e-43 178.7 226 41.6
Ca_19237_v3 Cicer arietinum L. HOM05D004427 ORTHO05D005381 5.3e-43 178.7 234 41.5
COL.COLO4_25263 Corchorus olitorius HOM05D004427 ORTHO05D005381 6.9e-43 178.3 229 43.7
CiPaw.14G077000 Carya illinoinensis HOM05D004427 ORTHO05D005381 9.0e-43 177.9 228 42.5
Haze_23944 Corylus avellana HOM05D004427 ORTHO05D005381 9.0e-43 177.9 227 43.2
AUR62037165 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.2e-42 177.6 227 42.7
Lj1C183T1 Lonicera japonica HOM05D004427 ORTHO05D005381 1.2e-42 177.6 219 43.8
Nn2g10653 Nelumbo nucifera HOM05D004427 ORTHO05D005381 1.5e-42 177.2 224 40.6
Glyma.12G072600 Glycine max HOM05D004427 ORTHO05D005381 2.0e-42 176.8 227 43.2
Psat7g222000 Pisum sativum HOM05D004427 ORTHO05D005381 2.0e-42 176.8 238 41.2
Cc01_g11690 Coffea canephora HOM05D004427 ORTHO05D005381 2.6e-42 176.4 220 41.8
CANSAT54G0683 Cannabis sativa HOM05D004427 ORTHO05D005381 4.5e-42 175.6 225 43.1
TWI75G0497 Tripterygium wilfordii HOM05D004427 ORTHO05D005381 4.5e-42 175.6 236 39.0
unitig_0.g1522 Utricularia gibba HOM05D004427 ORTHO05D005381 5.8e-42 175.3 221 41.2
EL10Ac9g22377 Beta vulgaris HOM05D004427 ORTHO05D005381 9.9e-42 174.5 227 39.6
Thhalv10014584m.g Eutrema salsugineum HOM05D004427 ORTHO05D005381 9.9e-42 174.5 227 41.9
SGA_v2.0_scaffold80G25743 Striga asiatica HOM05D004427 ORTHO05D005381 9.9e-42 174.5 224 42.4
Nitab4.5_0000100g0070 Nicotiana tabacum HOM05D004427 ORTHO05D005381 1.3e-41 174.1 193 46.6
Cfa011378 Carpinus fangiana HOM05D004427 ORTHO05D005381 1.7e-41 173.7 227 42.3
Nitab4.5_0000607g0030 Nicotiana tabacum HOM05D004427 ORTHO05D005381 2.2e-41 173.3 206 45.1
PGR119G1466 Punica granatum HOM05D004427 ORTHO05D005381 3.8e-41 172.6 225 41.3
SHI06027 Sapria himalayana HOM05D004427 ORTHO05D005381 3.8e-41 172.6 221 41.6
Lalb_Chr19g0137481 Lupinus albus HOM05D004427 ORTHO05D005381 4.9e-41 172.2 226 39.8
FAN16G3079 Fragaria x ananassa HOM05D004427 ORTHO05D005381 6.4e-41 171.8 225 43.6
Gohir.D05G078000 Gossypium hirsutum HOM05D004427 ORTHO05D005381 6.4e-41 171.8 237 40.5
Lsat_1_v5_gn_6_24041 Lactuca sativa HOM05D004427 ORTHO05D005381 6.4e-41 171.8 225 41.8
QL01p036593 Quercus lobata HOM05D004427 ORTHO05D005381 6.4e-41 171.8 229 41.5
FAN25G0902 Fragaria x ananassa HOM05D004427 ORTHO05D005381 8.4e-41 171.4 236 41.5
VMungo1127G1062 Vigna mungo HOM05D004427 ORTHO05D005381 1.1e-40 171.0 227 41.0
Gohir.A05G075200 Gossypium hirsutum HOM05D004427 ORTHO05D005381 1.4e-40 170.6 237 39.7
Gorai.009G079500 Gossypium raimondii HOM05D004427 ORTHO05D005381 1.4e-40 170.6 237 40.1
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 1.9e-40 170.2 226 41.2
BcaB01g04643 Brassica carinata HOM05D004427 ORTHO05D005381 2.4e-40 169.9 229 42.4
BraA03t10444Z Brassica rapa HOM05D004427 ORTHO05D005381 2.4e-40 169.9 229 41.9
CSS0013146 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.4e-40 169.9 224 37.5
AUR62025117 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.4e-40 169.9 227 40.1
FvH4_3g33710 Fragaria vesca HOM05D004427 ORTHO05D005381 2.4e-40 169.9 225 42.7
Lj3g0007721 Lotus japonicus HOM05D004427 ORTHO05D005381 2.4e-40 169.9 240 38.8
RcHm_v2.0_Chr5g0061241 Rosa chinensis HOM05D004427 ORTHO05D005381 2.4e-40 169.9 225 43.6
A03p11310 Brassica napus HOM05D004427 ORTHO05D005381 4.2e-40 169.1 229 41.9
Phvul.011G071700 Phaseolus vulgaris HOM05D004427 ORTHO05D005381 4.2e-40 169.1 226 41.2
CAN.G354.26 Capsicum annuum HOM05D004427 ORTHO05D005381 5.5e-40 168.7 221 40.7
AT5G60190 Arabidopsis thaliana HOM05D004427 ORTHO05D005381 7.1e-40 168.3 230 41.7
Duzib168G1361 Durio zibethinus HOM05D004427 ORTHO05D005381 7.1e-40 168.3 229 41.9
FAN21G1733 Fragaria x ananassa HOM05D004427 ORTHO05D005381 7.1e-40 168.3 225 42.7
CSS0042497 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.2e-39 167.5 219 38.8
Aa31LG1G12350 Aethionema arabicum HOM05D004427 ORTHO05D005381 1.6e-39 167.2 225 42.2
Ah.02g113850 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.6e-39 167.2 227 42.3
FAN11G1819 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.6e-39 167.2 225 42.7
Potri.013G002700 Populus trichocarpa HOM05D004427 ORTHO05D005381 1.6e-39 167.2 244 40.6
SEGI_39191 Sequoiadendron giganteum HOM05D004427 ORTHO05D005381 1.6e-39 167.2 221 43.0
TAR623G1453 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.6e-39 167.2 225 40.9
Duzib150G0661 Durio zibethinus HOM05D004427 ORTHO05D005381 2.7e-39 166.4 229 41.9
Sp6g21820 Schrenkiella parvula HOM05D004427 ORTHO05D005381 2.7e-39 166.4 225 41.3
AL8G36800 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 3.5e-39 166.0 230 41.3
Carub.0008s2094 Capsella rubella HOM05D004427 ORTHO05D005381 3.5e-39 166.0 223 40.8
AL817U10010 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 7.9e-39 164.9 230 41.3
Peaxi162Scf00155g00071 Petunia axillaris HOM05D004427 ORTHO05D005381 7.9e-39 164.9 179 46.4
Thecc.09G261900 Theobroma cacao HOM05D004427 ORTHO05D005381 7.9e-39 164.9 229 41.5
BcaB08g36313 Brassica carinata HOM05D004427 ORTHO05D005381 1.0e-38 164.5 226 42.9
Prupe.6G092400 Prunus persica HOM05D004427 ORTHO05D005381 1.0e-38 164.5 229 39.3
arahy.Tifrunner.gnm1.ann1.T6X9B2 Arachis hypogaea HOM05D004427 ORTHO05D005381 1.3e-38 164.1 238 38.2
MD11G1123000 Malus domestica HOM05D004427 ORTHO05D005381 1.8e-38 163.7 229 39.7
arahy.Tifrunner.gnm1.ann1.JL7YN4 Arachis hypogaea HOM05D004427 ORTHO05D005381 2.3e-38 163.3 231 39.0
QL03p001209 Quercus lobata HOM05D004427 ORTHO05D005381 2.3e-38 163.3 251 36.3
GSVIVG01025117001 Vitis vinifera HOM05D004427 ORTHO05D005381 2.3e-38 163.3 222 39.2
BolC3t13765H Brassica oleracea HOM05D004427 ORTHO05D005381 3.0e-38 162.9 229 40.6
Os12g0103580 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 3.0e-38 162.9 240 40.8
ATR0069G023 Amborella trichopoda HOM05D004427 ORTHO05D005381 6.7e-38 161.8 224 41.5
C03p13030 Brassica napus HOM05D004427 ORTHO05D005381 6.7e-38 161.8 225 40.9
Sabra13G0002300 Salix brachista HOM05D004427 ORTHO05D005381 6.7e-38 161.8 244 39.8
CARHR273870 Cardamine hirsuta HOM05D004427 ORTHO05D005381 5.6e-37 158.7 225 40.9
MD09G1211300 Malus domestica HOM05D004427 ORTHO05D005381 5.6e-37 158.7 229 39.3
CSS0008575 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 7.4e-37 158.3 187 42.2
Mapoly0009s0037 Marchantia polymorpha HOM05D004427 ORTHO05D005381 4.8e-36 155.6 237 36.7
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05D004427 ORTHO05D005381 4.0e-35 152.5 224 39.3
vmacro14781 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 1.5e-34 150.6 230 35.7
A10p17340 Brassica napus HOM05D004427 ORTHO05D005381 4.5e-34 149.1 220 40.5
CSS0048170 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 7.6e-34 148.3 216 36.6
BraA10t43818Z Brassica rapa HOM05D004427 ORTHO05D005381 2.9e-33 146.4 226 38.9
PSO210G2821 Papaver somniferum HOM05D004427 ORTHO05D005381 4.9e-33 145.6 224 37.1
Ah.02g123640 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.4e-32 144.1 230 36.5
AUR62003115 Chenopodium quinoa HOM05D004427 ORTHO05D005381 7.1e-32 141.7 225 39.6
EL10Ac8g19614 Beta vulgaris HOM05D004427 ORTHO05D005381 1.6e-31 140.6 270 33.3
TAR629G2862 Trochodendron aralioides HOM05D004427 ORTHO05D005381 6.0e-31 138.7 250 35.2
Cre01.g055050 Chlamydomonas reinhardtii HOM05D004427 ORTHO05D005381 1.9e-29 133.7 216 40.7
EL10Ac9g22643 Beta vulgaris HOM05D004427 ORTHO05D005381 5.7e-29 132.1 264 35.2
Hund22380 Selenicereus undatus HOM05D004427 ORTHO05D005381 5.7e-29 132.1 238 35.7
Ah.02g123630 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.3e-28 131.0 264 31.1
TAR371G1244 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.6e-28 130.6 260 32.3
Sc06g0007950 Simmondsia chinensis HOM05D004427 ORTHO05D005381 2.2e-28 130.2 154 43.5
Ah.03g139880 Amaranthus hybridus HOM05D004427 ORTHO05D005381 8.2e-28 128.3 265 31.3
DCAR_002673 Daucus carota HOM05D004427 ORTHO05D005381 9.0e-27 124.8 253 30.8
TAR376G0174 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.5e-26 124.0 274 32.5
Pp3c21_14830 Physcomitrium patens HOM05D004427 ORTHO05D005381 2.6e-26 123.2 231 35.5
MCO07G761 Micromonas commoda HOM05D004427 ORTHO05D005381 5.9e-26 122.1 224 33.9
SMO367G1171 Selaginella moellendorffii HOM05D002435 ORTHO05D002550 5.9e-26 122.1 204 38.2
EL10Ac5g12984 Beta vulgaris HOM05D004427 ORTHO05D005381 3.8e-25 119.4 233 33.0
FvH4_6g48790 Fragaria vesca HOM05D004427 ORTHO05D005381 6.5e-25 118.6 315 28.9
FAN02G3329 Fragaria x ananassa HOM05D004427 ORTHO05D005381 8.5e-25 118.2 161 42.9
QL01p000714 Quercus lobata HOM05D004427 ORTHO05D005381 1.4e-24 117.5 242 31.0
BcaC04g19664 Brassica carinata HOM05D004427 ORTHO05D005381 3.2e-24 116.3 226 35.4
CSS0032605 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.2e-24 116.3 218 32.6
CBR_g4323 Chara braunii HOM05D004427 ORTHO05D005381 1.2e-23 114.4 233 34.3
TAR371G1167 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.6e-23 114.0 234 31.6
Solyc05g005310.3 Solanum lycopersicum HOM05D004427 ORTHO05D005381 2.1e-23 113.6 154 42.2
FAN05G2706 Fragaria x ananassa HOM05D004427 ORTHO05D005381 3.6e-23 112.8 161 41.6
DCAR_026152 Daucus carota HOM05D004427 ORTHO05D005381 1.0e-22 111.3 221 33.9
CDE04G2448 Ceratophyllum demersum HOM05D004427 ORTHO05D005381 8.7e-22 108.2 158 36.7
AUR62032911 Chenopodium quinoa HOM05D004427 ORTHO05D005381 5.7e-21 105.5 263 27.4
C09p52680 Brassica napus HOM05D004427 ORTHO05D005381 7.4e-21 105.1 183 36.6
BolC9t58136H Brassica oleracea HOM05D004427 ORTHO05D005381 7.4e-21 105.1 183 36.6
Prupe.1G350400 Prunus persica HOM05D004427 ORTHO05D005381 9.7e-21 104.8 156 38.5
Lj3A845T93 Lonicera japonica HOM05D004427 ORTHO05D005381 1.7e-20 104.0 218 30.3
FvH4_4g37251 Fragaria vesca HOM05D004427 ORTHO05D005381 9.1e-19 98.2 149 38.3
DCAR_012615 Daucus carota HOM05D004427 ORTHO05D005381 1.2e-18 97.8 249 28.9
RcHm_v2.0_Chr4g0447061 Rosa chinensis HOM05D004427 ORTHO05D005381 3.4e-18 96.3 148 39.9
FAN17G0248 Fragaria x ananassa HOM05D004427 ORTHO05D025555 4.2e-16 89.4 143 37.8
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 5.5e-16 89.0 198 34.3
FAN12G0369 Fragaria x ananassa HOM05D028185 ORTHO05D025555 9.4e-16 88.2 143 36.4
Actinidia09505 Actinidia chinensis HOM05D004427 ORTHO05D005381 2.7e-15 86.7 145 36.6
MD00G1127100 Malus domestica HOM05D004427 ORTHO05D005381 1.0e-14 84.7 149 32.9
RcHm_v2.0_Chr4g0387651 Rosa chinensis HOM05D028185 ORTHO05D025555 1.4e-14 84.3 133 36.8
CSS0019084 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.1e-13 81.3 82 46.3
FAN09G1397 Fragaria x ananassa HOM05D004427 ORTHO05D005381 5.7e-13 79.0 218 29.8
CSS0026652 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.3e-12 77.8 82 45.1
Lj1C183G2 Lonicera japonica HOM05D004427 ORTHO05D005381 1.8e-11 73.9 108 41.7
CAN.G682.5 Capsicum annuum HOM05D004427 ORTHO05D005381 2.0e-10 70.5 116 40.5
FAN07G0825 Fragaria x ananassa HOM05D000639 ORTHO05D006731 1.0e-09 68.2 209 26.3
AUR62037167 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.9e-09 66.6 66 43.9
FAN17G0618 Fragaria x ananassa HOM05D000639 ORTHO05D006731 1.9e-08 63.9 113 32.7
Manes.11G140201 Manihot esculenta HOM05D004427 ORTHO05D005381 2.1e-07 60.5 134 32.8
Rhsim01G0258900 Rhododendron simsii HOM05D004427 ORTHO05D005381 2.1e-07 60.5 73 34.2
Cfa026731 Carpinus fangiana HOM05D004427 ORTHO05D005381 8.0e-07 58.5 113 36.3


User provided reference genes

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