Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0677500 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 0.0e+00 1082.0 535 100.0
Zm00001eb331260 Zea mays HOM05D003758 ORTHO05D004344 7.5e-106 388.7 318 59.1
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 1.6e-95 354.4 524 40.8
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.4e-88 331.3 523 37.5
TAR629G2570 Trochodendron aralioides HOM05D003758 ORTHO05D004344 3.5e-87 326.6 500 40.2
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 6.6e-86 322.4 527 38.3
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 6.6e-86 322.4 538 37.5
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 8.9e-83 312.0 532 37.6
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 6.4e-81 305.8 533 37.3
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 2.4e-80 303.9 520 37.5
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 1.6e-79 301.2 518 37.6
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 4.6e-79 299.7 520 37.1
Sc05g0000350 Simmondsia chinensis HOM05D003758 ORTHO05D004344 2.3e-78 297.4 517 36.9
ATR0693G226 Amborella trichopoda HOM05D003758 ORTHO05D004344 3.0e-78 297.0 580 35.7
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 3.9e-78 296.6 522 36.2
PSO384G2631 Papaver somniferum HOM05D003758 ORTHO05D004344 3.9e-78 296.6 524 37.2
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 5.0e-78 296.2 533 36.2
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 8.6e-78 295.4 552 37.3
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 1.1e-77 295.0 524 36.8
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 1.1e-77 295.0 510 36.9
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 1.9e-77 294.3 526 35.4
Os11g0677425 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 1.9e-77 294.3 176 84.7
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 9.5e-77 292.0 539 37.5
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 4.7e-76 289.7 513 36.1
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 1.4e-75 288.1 516 34.9
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 6.8e-75 285.8 518 37.1
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 1.2e-74 285.0 522 34.9
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 1.5e-74 284.6 541 35.7
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 2.0e-74 284.3 483 36.4
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 2.0e-74 284.3 483 36.4
arahy.Tifrunner.gnm1.ann1.CZ320C Arachis hypogaea HOM05D003758 ORTHO05D004344 2.6e-74 283.9 514 37.2
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 2.6e-74 283.9 524 36.3
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 4.4e-74 283.1 534 37.3
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 4.4e-74 283.1 521 35.9
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 1.3e-73 281.6 530 34.5
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.3e-73 281.6 530 34.5
THA.LOC104807090 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 1.7e-73 281.2 524 34.4
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 3.7e-73 280.0 511 34.1
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 4.9e-73 279.6 530 33.0
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 6.4e-73 279.3 484 37.8
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 6.4e-73 279.3 525 37.0
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 8.3e-73 278.9 524 34.9
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 1.4e-72 278.1 526 34.2
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 1.9e-72 277.7 490 35.5
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 1.2e-71 275.0 549 33.9
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 1.2e-71 275.0 521 34.5
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 2.7e-71 273.9 503 34.8
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 3.5e-71 273.5 512 34.2
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 3.5e-71 273.5 517 34.2
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 3.5e-71 273.5 519 34.1
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 3.5e-71 273.5 524 34.0
Manes.08G002202 Manihot esculenta HOM05D003758 ORTHO05D004344 4.6e-71 273.1 510 35.7
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 6.0e-71 272.7 530 34.5
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 7.8e-71 272.3 525 34.5
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 1.7e-70 271.2 522 33.9
CiPaw.05G057800 Carya illinoinensis HOM05D003758 ORTHO05D004344 2.3e-70 270.8 528 35.4
Dinv10116 Davidia involucrata HOM05D003758 ORTHO05D004344 2.3e-70 270.8 484 36.2
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 3.0e-70 270.4 520 34.8
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 3.9e-70 270.0 522 34.1
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 5.1e-70 269.6 531 33.5
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 6.6e-70 269.2 509 34.0
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 6.6e-70 269.2 516 35.1
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 6.6e-70 269.2 551 33.0
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 8.6e-70 268.9 524 35.3
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 8.6e-70 268.9 532 35.5
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 1.1e-69 268.5 509 34.4
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 1.1e-69 268.5 509 34.4
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 1.1e-69 268.5 508 34.8
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 1.1e-69 268.5 488 34.4
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 1.5e-69 268.1 528 32.8
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 1.5e-69 268.1 528 32.8
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.9e-69 267.7 530 33.8
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 1.9e-69 267.7 516 34.3
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 2.5e-69 267.3 516 34.7
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 2.5e-69 267.3 516 34.7
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 4.3e-69 266.5 528 33.0
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 5.6e-69 266.2 500 35.4
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 9.5e-69 265.4 550 34.0
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 9.5e-69 265.4 540 33.7
Cc02_g30290 Coffea canephora HOM05D003758 ORTHO05D004344 4.7e-68 263.1 549 34.4
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 6.2e-68 262.7 512 33.8
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 8.1e-68 262.3 517 33.3
Ah.02g112390 Amaranthus hybridus HOM05D003758 ORTHO05D004344 1.1e-67 261.9 512 32.4
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 1.4e-67 261.5 488 34.6
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 1.8e-67 261.2 540 33.3
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 2.4e-67 260.8 514 33.5
SalBow3G2832 Salvia bowleyana HOM05D003758 ORTHO05D004344 2.4e-67 260.8 528 31.2
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 5.2e-67 259.6 476 35.3
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 5.2e-67 259.6 476 35.3
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 5.2e-67 259.6 476 35.3
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 8.9e-67 258.8 528 33.1
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 2.6e-66 257.3 517 33.1
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 2.6e-66 257.3 525 34.5
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 3.4e-66 256.9 523 33.1
arahy.Tifrunner.gnm1.ann1.8X0TS3 Arachis hypogaea HOM05D003758 ORTHO05D004344 5.8e-66 256.1 562 33.8
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 2.9e-65 253.8 523 32.7
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 3.8e-65 253.4 503 33.4
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 4.9e-65 253.1 519 34.5
GSVIVG01038383001 Vitis vinifera HOM05D003758 ORTHO05D004344 6.4e-65 252.7 546 35.0
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 2.4e-64 250.8 527 33.8
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 1.2e-63 248.4 500 34.2
CiPaw.05G057600 Carya illinoinensis HOM05D003758 ORTHO05D004344 7.8e-63 245.7 539 34.1
Haze_16412 Corylus avellana HOM05D003758 ORTHO05D004344 2.3e-62 244.2 479 36.3
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 2.5e-61 240.7 499 32.9
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 3.3e-61 240.4 571 31.0
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 6.2e-60 236.1 516 32.0
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 8.1e-60 235.7 516 32.8
MSTRG.19341 Avicennia marina HOM05D003758 ORTHO05D004344 5.8e-58 229.6 520 31.9
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 9.9e-58 228.8 515 30.7
Gohir.D11G112900 Gossypium hirsutum HOM05D003758 ORTHO05D004344 1.7e-57 228.0 451 33.3
Prupe.3G010600 Prunus persica HOM05D003758 ORTHO05D004344 2.9e-57 227.3 395 33.9
Cc00_g01260 Coffea canephora HOM05D003758 ORTHO05D004344 3.2e-56 223.8 530 32.5
Atru.chr9.1365 Acer truncatum HOM05D003758 ORTHO05D004344 6.9e-51 206.1 366 38.3
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 5.8e-50 203.0 517 31.7
arahy.Tifrunner.gnm1.ann1.C8HKPK Arachis hypogaea HOM05D003758 ORTHO05D004344 3.2e-48 197.2 453 32.9
FAN26G0338 Fragaria x ananassa HOM05D003758 ORTHO05D004344 6.7e-46 189.5 330 35.8
CiPaw.05G057200 Carya illinoinensis HOM05D003758 ORTHO05D004344 3.3e-45 187.2 468 32.5
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 3.7e-44 183.7 612 26.8
AagrBONN_evm.TU.Sc2ySwM_344.4368 Anthoceros agrestis HOM05D003758 ORTHO05D004344 8.4e-41 172.6 380 32.9
Mapoly0039s0104 Marchantia polymorpha HOM05D003758 ORTHO05D004344 1.3e-38 165.2 417 28.8
Lj2A672T52 Lonicera japonica HOM05D003758 ORTHO05D004344 5.6e-37 159.8 316 33.5
Cpa.g.sc18.67 Carica papaya HOM05D003758 ORTHO05D004344 2.8e-36 157.5 242 38.0
TPR.G35143 Trifolium pratense HOM05D003758 ORTHO05D004344 3.7e-36 157.1 260 39.6
Pp3c2_6540 Physcomitrium patens HOM05D003758 ORTHO05D004344 5.3e-35 153.3 332 29.5
Actinidia03664 Actinidia chinensis HOM05D003758 ORTHO05D004344 3.4e-34 150.6 283 35.7
TPR.G844 Trifolium pratense HOM05D003758 ORTHO05D004344 1.1e-32 145.6 284 35.2
Eucgr.D02543 Eucalyptus grandis HOM05D003758 ORTHO05D004344 1.4e-32 145.2 341 28.7
Cpa.g.sc18.69 Carica papaya HOM05D003758 ORTHO05D004344 4.8e-28 130.2 273 31.9
Cc00_g26030 Coffea canephora HOM05D003758 ORTHO05D004344 5.0e-25 120.2 325 30.2
HanXRQChr06g0163771 Helianthus annuus HOM05D003758 ORTHO05D004344 1.1e-24 119.0 291 28.9
CDE11G0119 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 9.4e-24 115.9 271 29.5
MD17G1275600 Malus domestica HOM05D003758 ORTHO05D004344 4.3e-21 107.1 119 41.2
SalBow1G0003 Salvia bowleyana HOM05D003758 ORTHO05D004344 1.3e-20 105.5 246 32.5
TPR.G23107 Trifolium pratense HOM05D003758 ORTHO05D004344 1.1e-19 102.4 192 37.0
CBR_g22385 Chara braunii HOM05D006522 ORTHO05D008183 5.9e-18 96.7 429 22.1
MD17G1273000 Malus domestica HOM05D003758 ORTHO05D004344 1.0e-14 85.9 466 22.3
GSVIVG01038399001 Vitis vinifera HOM05D003758 ORTHO05D004344 6.7e-14 83.2 100 45.0
MD17G1275700 Malus domestica HOM05D003758 ORTHO05D004344 4.8e-12 77.0 154 35.1
AL302U10030 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 3.1e-11 74.3 157 31.2
SEGI_18930 Sequoiadendron giganteum HOM05D003758 ORTHO05D004344 2.0e-10 71.6 244 29.1
CDE11G1215 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 5.9e-10 70.1 180 29.4
Glyma.17G000100 Glycine max HOM05D003758 ORTHO05D004344 3.8e-09 67.4 127 31.5
CBR_g17052 Chara braunii HOM05D003758 ORTHO05D004344 1.9e-08 65.1 153 30.1
Cre04.g214690 Chlamydomonas reinhardtii HOM05D003758 ORTHO05D004344 3.2e-08 64.3 72 41.7
ECA236G0722 Erigeron canadensis HOM05D003758 ORTHO05D004344 1.2e-07 62.4 123 30.9
Aqoxy3G01505 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 8.0e-07 59.7 45 55.6
CBR_g41368 Chara braunii HOM05D003758 ORTHO05D004344 1.8e-06 58.5 172 26.2


User provided reference genes

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