Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 4.6e-289 997.3 541 100.0
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 3.2e-221 771.9 475 79.4
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 1.3e-201 706.8 462 74.5
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 2.1e-201 706.1 462 73.4
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 1.7e-198 696.4 495 70.1
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 3.2e-197 692.2 461 72.2
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 4.2e-197 691.8 462 72.7
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 5.5e-197 691.4 462 72.1
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 7.1e-197 691.0 477 71.3
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 2.1e-196 689.5 462 71.6
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 2.3e-195 686.0 462 71.0
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 2.3e-195 686.0 489 69.7
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 3.9e-195 685.3 462 71.6
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 1.5e-194 683.3 462 71.2
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 5.6e-194 681.4 461 71.6
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 7.4e-194 681.0 487 69.4
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 2.8e-193 679.1 462 70.8
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 2.8e-193 679.1 462 72.1
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 2.8e-193 679.1 462 71.0
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 6.2e-193 677.9 492 68.3
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 8.1e-193 677.6 496 67.5
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 1.1e-192 677.2 462 70.3
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 1.1e-192 677.2 493 68.8
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 1.1e-192 677.2 462 71.2
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 2.4e-192 676.0 462 71.0
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 2.4e-192 676.0 494 68.0
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 3.1e-192 675.6 461 70.9
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 3.1e-192 675.6 493 68.6
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 4.0e-192 675.2 462 70.1
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 4.0e-192 675.2 462 70.3
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 5.8e-191 671.4 462 70.6
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 1.0e-190 670.6 462 69.9
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 2.2e-190 669.5 462 69.3
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 2.9e-190 669.1 462 70.1
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 4.9e-190 668.3 493 67.5
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 6.5e-190 667.9 464 69.4
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 1.1e-189 667.2 462 70.1
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 1.4e-189 666.8 473 69.6
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 1.9e-189 666.4 460 70.0
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 3.2e-189 665.6 491 66.2
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 3.2e-189 665.6 494 66.6
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 9.3e-189 664.1 462 70.3
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 9.3e-189 664.1 458 70.1
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 2.1e-188 662.9 460 69.3
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 2.1e-188 662.9 460 69.3
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 3.5e-188 662.1 490 67.6
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 6.0e-188 661.4 461 69.6
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 1.0e-187 660.6 460 69.1
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 1.0e-187 660.6 490 66.7
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 1.3e-187 660.2 460 69.1
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 1.3e-187 660.2 460 67.8
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 3.9e-187 658.7 462 69.5
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 6.7e-187 657.9 462 69.7
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 6.7e-187 657.9 462 69.7
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 8.7e-187 657.5 461 69.4
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 8.7e-187 657.5 458 69.0
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 1.9e-186 656.4 460 68.7
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 4.3e-186 655.2 462 69.9
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 5.7e-186 654.8 458 69.9
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 9.6e-186 654.1 490 65.3
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 9.6e-186 654.1 462 70.3
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 1.3e-185 653.7 491 66.0
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 2.1e-185 652.9 490 66.3
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 3.7e-185 652.1 491 65.4
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 8.2e-185 651.0 472 68.4
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 2.4e-184 649.4 494 65.0
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 4.1e-184 648.7 463 69.1
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 1.5e-183 646.7 491 65.6
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 2.6e-183 646.0 490 65.3
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 4.5e-183 645.2 461 69.2
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 5.9e-183 644.8 500 64.2
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 7.6e-183 644.4 461 69.2
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 5.0e-182 641.7 462 65.8
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 6.5e-182 641.3 462 67.7
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 8.5e-182 641.0 487 66.3
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 1.1e-181 640.6 480 66.9
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 1.4e-181 640.2 472 66.9
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 1.4e-181 640.2 364 86.0
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 5.5e-181 638.3 462 68.6
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 7.2e-181 637.9 391 79.8
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 1.6e-180 636.7 474 65.8
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 2.1e-180 636.3 461 68.3
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 2.1e-180 636.3 476 66.8
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 6.1e-180 634.8 462 67.3
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 1.1e-178 630.6 483 63.8
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 4.3e-178 628.6 460 66.7
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 5.7e-178 628.2 458 68.1
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 7.4e-178 627.9 455 65.5
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 7.4e-178 627.9 462 65.6
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 3.7e-177 625.5 490 63.5
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 1.8e-176 623.2 490 63.3
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 4.1e-176 622.1 469 65.5
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 9.1e-176 620.9 471 66.9
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.0e-175 619.8 462 66.9
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 4.5e-175 618.6 474 65.0
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 7.7e-175 617.8 457 66.1
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 7.7e-175 617.8 462 67.3
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 8.5e-174 614.4 490 61.6
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 4.2e-173 612.1 462 63.9
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 4.2e-173 612.1 461 65.7
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 1.2e-172 610.5 462 63.6
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 2.1e-172 609.8 461 66.6
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 2.1e-172 609.8 515 63.3
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 3.6e-172 609.0 469 64.6
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 6.1e-172 608.2 456 65.8
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 7.9e-172 607.8 462 63.4
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 1.0e-171 607.4 508 62.2
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 1.8e-171 606.7 459 66.7
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 2.3e-171 606.3 524 58.6
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 2.0e-170 603.2 462 63.6
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 1.1e-168 597.4 602 53.8
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 1.8e-168 596.7 482 63.1
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 1.2e-167 594.0 462 64.5
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.3e-166 590.5 456 64.5
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 1.1e-162 577.4 498 58.6
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 1.2e-159 567.4 467 60.0
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 2.1e-156 556.6 461 62.5
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 3.0e-155 552.7 362 74.0
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.4e-152 543.9 365 71.8
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 1.6e-151 540.4 461 61.8
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 1.4e-144 517.3 465 54.6
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 3.1e-144 516.2 488 53.7
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 9.2e-136 488.0 462 53.7
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 1.7e-134 483.8 380 65.0
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 5.6e-133 478.8 469 54.4
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 1.1e-128 464.5 462 54.8
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 4.6e-127 459.1 361 64.5
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 6.6e-126 455.3 324 68.5
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 2.9e-121 439.9 310 67.4
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 6.0e-119 432.2 289 72.7
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 2.6e-106 390.2 486 45.7
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 1.4e-104 384.4 480 45.4
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 7.3e-101 372.1 243 71.6
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 1.9e-96 357.5 266 65.0
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 2.7e-95 353.6 270 64.1
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 8.1e-92 342.0 216 74.1
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 3.1e-91 340.1 211 76.8
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 1.2e-90 338.2 218 75.2
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 6.4e-89 332.4 456 42.8
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 3.8e-81 306.6 221 65.6
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 5.5e-80 302.8 221 67.9
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.6e-79 301.2 240 65.0
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 6.7e-78 295.8 221 65.2
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 8.7e-78 295.4 293 54.9
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 3.4e-74 283.5 461 36.2
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 7.6e-74 282.3 270 51.9
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 8.7e-70 268.9 195 65.1
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 2.2e-68 264.2 184 72.8
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 3.1e-59 233.8 527 34.3
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.9e-56 224.6 277 46.2
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 1.4e-54 218.4 153 69.3
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 4.4e-53 213.4 270 47.4
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 2.2e-52 211.1 188 61.7
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 2.6e-50 204.1 184 58.2
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 2.1e-47 194.5 139 69.8
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 1.0e-41 175.6 124 66.1
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 3.2e-40 170.6 137 58.4
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 7.2e-40 169.5 125 61.6
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 3.6e-39 167.2 113 68.1
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 7.2e-32 142.9 155 50.3
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 2.1e-31 141.4 102 72.5
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.5e-29 135.2 80 73.8
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 3.4e-29 134.0 85 71.8
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 9.8e-29 132.5 76 81.6
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 7.0e-27 126.3 81 72.8
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 1.1e-24 119.0 76 75.0
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 2.5e-24 117.9 81 64.2
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 3.3e-24 117.5 314 30.6
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 3.6e-23 114.0 62 87.1
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 4.7e-23 113.6 310 29.4
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 4.0e-22 110.5 63 81.0
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 8.9e-22 109.4 80 68.8
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 5.7e-21 106.7 84 59.5
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 1.8e-19 101.7 158 42.4
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 7.8e-18 96.3 130 43.1
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 2.3e-17 94.7 57 71.9
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 8.6e-17 92.8 64 59.4
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 3.3e-16 90.9 64 62.5
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.4e-14 85.5 159 38.4
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 2.9e-12 77.8 79 53.2
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 5.4e-11 73.6 64 50.0
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 9.2e-11 72.8 51 60.8
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 3.5e-10 70.9 105 42.9
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 4.6e-10 70.5 48 70.8
SMO164G0195 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 4.7e-07 60.5 156 29.5


User provided reference genes

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