Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0623601 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D004391 2.9e-44 181.4 86 100.0
Os02g0194100 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D004391 1.5e-16 89.4 60 70.0
Os11g0538900 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D004391 1.5e-16 89.4 60 70.0
Zm00001eb206100 Zea mays HOM05D002030 ORTHO05D004391 1.3e-15 86.3 60 68.3
Aa31LG1G25930 Aethionema arabicum HOM05D002030 ORTHO05D004391 1.4e-14 82.8 60 65.0
Nn2g15681 Nelumbo nucifera HOM05D002030 ORTHO05D004391 1.8e-14 82.4 66 60.6
Zm00001eb236450 Zea mays HOM05D002030 ORTHO05D004391 1.8e-14 82.4 60 65.0
vmacro13609 Vaccinium macrocarpon HOM05D002030 ORTHO05D004391 2.4e-14 82.0 60 65.0
AL4G43330 Arabidopsis lyrata HOM05D002030 ORTHO05D004391 3.1e-14 81.6 60 65.0
AT2G44350 Arabidopsis thaliana HOM05D002030 ORTHO05D004391 3.1e-14 81.6 60 65.0
Cpa.g.sc189.5 Carica papaya HOM05D002030 ORTHO05D004391 3.1e-14 81.6 60 63.3
EL10Ac4g10124 Beta vulgaris HOM05D002030 ORTHO05D004391 4.1e-14 81.3 60 63.3
EL10Ac4g10165 Beta vulgaris HOM05D002030 ORTHO05D004391 4.1e-14 81.3 60 63.3
EL10Ac9g21933 Beta vulgaris HOM05D002030 ORTHO05D004391 4.1e-14 81.3 60 63.3
BcaB01g03317 Brassica carinata HOM05D002030 ORTHO05D004391 4.1e-14 81.3 60 65.0
BcaB06g29369 Brassica carinata HOM05D002030 ORTHO05D004391 4.1e-14 81.3 60 65.0
BcaC01g05172 Brassica carinata HOM05D002030 ORTHO05D004391 4.1e-14 81.3 60 65.0
A03p24780 Brassica napus HOM05D002030 ORTHO05D004391 4.1e-14 81.3 60 65.0
A04p33270 Brassica napus HOM05D002030 ORTHO05D004391 4.1e-14 81.3 60 65.0
C03p29550 Brassica napus HOM05D002030 ORTHO05D004391 4.1e-14 81.3 60 65.0
C04p70970 Brassica napus HOM05D002030 ORTHO05D004391 4.1e-14 81.3 60 65.0
BolC3t15304H Brassica oleracea HOM05D002030 ORTHO05D004391 4.1e-14 81.3 60 65.0
BolC4t28600H Brassica oleracea HOM05D002030 ORTHO05D004391 4.1e-14 81.3 60 65.0
BraA03t11685Z Brassica rapa HOM05D002030 ORTHO05D004391 4.1e-14 81.3 60 65.0
BraA04t18788Z Brassica rapa HOM05D002030 ORTHO05D004391 4.1e-14 81.3 60 65.0
AUR62000179 Chenopodium quinoa HOM05D002030 ORTHO05D007413 4.1e-14 81.3 60 63.3
AUR62011552 Chenopodium quinoa HOM05D002030 ORTHO05D004391 4.1e-14 81.3 60 63.3
AUR62016372 Chenopodium quinoa HOM05D002030 ORTHO05D004391 4.1e-14 81.3 60 63.3
AUR62039829 Chenopodium quinoa HOM05D002030 ORTHO05D004391 4.1e-14 81.3 60 63.3
Haze_03285 Corylus avellana HOM05D002030 ORTHO05D004391 4.1e-14 81.3 60 65.0
Thhalv10001384m.g Eutrema salsugineum HOM05D002030 ORTHO05D004391 4.1e-14 81.3 60 65.0
MBI01_g01369_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D004391 4.1e-14 81.3 66 60.6
Mapoly0063s0010 Marchantia polymorpha HOM05D002030 ORTHO05D004391 4.1e-14 81.3 66 57.6
Mapoly0200s0007 Marchantia polymorpha HOM05D002030 ORTHO05D004391 4.1e-14 81.3 66 57.6
Mapoly0216s0011 Marchantia polymorpha HOM05D002030 ORTHO05D004391 4.1e-14 81.3 66 57.6
Sp4g26410 Schrenkiella parvula HOM05D002030 ORTHO05D004391 4.1e-14 81.3 60 65.0
CDE06G2277 Ceratophyllum demersum HOM05D002030 ORTHO05D004391 5.4e-14 80.9 66 59.1
Mapoly0383s0001 Marchantia polymorpha HOM05D002030 ORTHO05D004391 5.4e-14 80.9 66 57.6
Pp3c1_40030 Physcomitrium patens HOM05D002030 ORTHO05D004391 5.4e-14 80.9 66 56.1
Aa31LG10G14260 Aethionema arabicum HOM05D002030 ORTHO05D004391 9.1e-14 80.1 60 63.3
CSS0004924 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D004391 9.1e-14 80.1 60 63.3
CSS0014563 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D004391 9.1e-14 80.1 60 63.3
CSS0020062 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D004391 9.1e-14 80.1 60 63.3
CiPaw.16G066900 Carya illinoinensis HOM05D002030 ORTHO05D004391 9.1e-14 80.1 60 63.3
Lsat_1_v5_gn_1_87220 Lactuca sativa HOM05D002030 ORTHO05D004391 9.1e-14 80.1 60 60.0
Prupe.2G002900 Prunus persica HOM05D002030 ORTHO05D004391 9.1e-14 80.1 60 60.0
Carub.0004s2693 Capsella rubella HOM05D002030 ORTHO05D004391 1.2e-13 79.7 60 63.3
CARHR139510 Cardamine hirsuta HOM05D002030 ORTHO05D004391 1.2e-13 79.7 60 63.3
Pp3c13_21410 Physcomitrium patens HOM05D002030 ORTHO05D004391 1.2e-13 79.7 66 54.5
Zm00001eb206090 Zea mays HOM05D002030 ORTHO05D004391 1.2e-13 79.7 60 60.0
Actinidia05845 Actinidia chinensis HOM05D002030 ORTHO05D004391 1.6e-13 79.3 60 61.7
ATR0006G067 Amborella trichopoda HOM05D002030 ORTHO05D004391 1.6e-13 79.3 66 59.1
Aqoxy2G00078 Aquilegia oxysepala HOM05D002030 ORTHO05D004391 1.6e-13 79.3 60 63.3
Atru.chr11.2703 Acer truncatum HOM05D002030 ORTHO05D004391 2.0e-13 79.0 60 60.0
BcaC02g10111 Brassica carinata HOM05D002030 ORTHO05D004391 2.0e-13 79.0 60 61.7
C04p32630 Brassica napus HOM05D002030 ORTHO05D004391 2.0e-13 79.0 60 61.7
BolC4t24830H Brassica oleracea HOM05D002030 ORTHO05D004391 2.0e-13 79.0 60 61.7
COL.COLO4_26822 Corchorus olitorius HOM05D002030 ORTHO05D004391 2.0e-13 79.0 60 61.7
Dinv43498 Davidia involucrata HOM05D002030 ORTHO05D004391 2.0e-13 79.0 60 61.7
Eucgr.G03412 Eucalyptus grandis HOM05D002030 ORTHO05D004391 2.0e-13 79.0 66 56.1
Gohir.D05G162800 Gossypium hirsutum HOM05D002030 ORTHO05D004391 2.0e-13 79.0 60 61.7
Gorai.009G167800 Gossypium raimondii HOM05D002030 ORTHO05D004391 2.0e-13 79.0 60 61.7
MBI04_g33965_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D004391 2.0e-13 79.0 66 59.1
MD00G1055300 Malus domestica HOM05D002030 ORTHO05D004391 2.0e-13 79.0 60 60.0
PGR044G1446 Punica granatum HOM05D002030 ORTHO05D004391 2.0e-13 79.0 60 61.7
QL04p001335 Quercus lobata HOM05D002030 ORTHO05D004391 2.0e-13 79.0 60 61.7
QL04p001534 Quercus lobata HOM05D002030 ORTHO05D004391 2.0e-13 79.0 60 61.7
Rhsim07G0049800 Rhododendron simsii HOM05D002030 ORTHO05D004391 2.0e-13 79.0 60 61.7
Thecc.01G416600 Theobroma cacao HOM05D002030 ORTHO05D004391 2.0e-13 79.0 60 61.7
TWI09G1279 Tripterygium wilfordii HOM05D002030 ORTHO05D004391 2.0e-13 79.0 60 61.7
GSVIVG01001358001 Vitis vinifera HOM05D002030 ORTHO05D004391 2.0e-13 79.0 60 61.7
AL5G42300 Arabidopsis lyrata HOM05D002030 ORTHO05D004391 2.7e-13 78.6 60 61.7
BcaB02g08193 Brassica carinata HOM05D002030 ORTHO05D004391 2.7e-13 78.6 60 61.7
Carub.0005s2683 Capsella rubella HOM05D002030 ORTHO05D004391 2.7e-13 78.6 60 61.7
ClCG09G003730 Citrullus lanatus HOM05D002030 ORTHO05D004391 2.7e-13 78.6 60 61.7
Ciclev10031423m.g Citrus clementina HOM05D002030 ORTHO05D004391 2.7e-13 78.6 60 60.0
Thhalv10005966m.g Eutrema salsugineum HOM05D002030 ORTHO05D004391 2.7e-13 78.6 60 61.7
Gohir.A05G160100 Gossypium hirsutum HOM05D002030 ORTHO05D004391 2.7e-13 78.6 60 61.7
HanXRQChr16g0520361 Helianthus annuus HOM05D002030 ORTHO05D004391 2.7e-13 78.6 60 61.7
Manes.10G152000 Manihot esculenta HOM05D002030 ORTHO05D004391 2.7e-13 78.6 60 61.7
Potri.001G230500 Populus trichocarpa HOM05D002030 ORTHO05D004391 2.7e-13 78.6 60 61.7
RcHm_v2.0_Chr1g0313271 Rosa chinensis HOM05D002030 ORTHO05D004391 2.7e-13 78.6 60 60.0
Sabra16G0138000 Salix brachista HOM05D002030 ORTHO05D004391 2.7e-13 78.6 60 61.7
SalBow5G3889 Salvia bowleyana HOM05D002030 ORTHO05D004391 2.7e-13 78.6 60 60.0
Sp5g03110 Schrenkiella parvula HOM05D002030 ORTHO05D004391 2.7e-13 78.6 60 61.7
THA.LOC104817150 Tarenaya hassleriana HOM05D002030 ORTHO05D004391 2.7e-13 78.6 60 61.7
AagrBONN_evm.TU.Sc2ySwM_117.1175 Anthoceros agrestis HOM05D002030 ORTHO05D004391 3.5e-13 78.2 66 56.1
AagrBONN_evm.TU.Sc2ySwM_228.5639 Anthoceros agrestis HOM05D002030 ORTHO05D004391 3.5e-13 78.2 66 56.1
ECA234G1190 Erigeron canadensis HOM05D002030 ORTHO05D004391 3.5e-13 78.2 60 61.7
ECA248G2977 Erigeron canadensis HOM05D002030 ORTHO05D004391 3.5e-13 78.2 60 61.7
HanXRQChr01g0018081 Helianthus annuus HOM05D002030 ORTHO05D004391 3.5e-13 78.2 60 61.7
Sc02g0003780 Simmondsia chinensis HOM05D002030 ORTHO05D004391 3.5e-13 78.2 60 60.0
MSTRG.4998 Avicennia marina HOM05D002030 ORTHO05D004391 4.5e-13 77.8 60 60.0
MELO3C023506.2 Cucumis melo HOM05D002030 ORTHO05D004391 4.5e-13 77.8 60 61.7
CsaV3_7G031480 Cucumis sativus L. HOM05D002030 ORTHO05D004391 4.5e-13 77.8 60 61.7
MD02G1319300 Malus domestica HOM05D002030 ORTHO05D004391 4.5e-13 77.8 60 60.0
AT3G60100 Arabidopsis thaliana HOM05D002030 ORTHO05D004391 5.9e-13 77.4 60 61.7
A04p01870 Brassica napus HOM05D002030 ORTHO05D004391 5.9e-13 77.4 60 60.0
BraA04t15910Z Brassica rapa HOM05D002030 ORTHO05D004391 5.9e-13 77.4 60 60.0
CARHR170410 Cardamine hirsuta HOM05D002030 ORTHO05D004391 5.9e-13 77.4 60 60.0
PSO339G0144 Papaver somniferum HOM05D002030 ORTHO05D004391 5.9e-13 77.4 66 54.5
PSO384G2681 Papaver somniferum HOM05D002030 ORTHO05D004391 5.9e-13 77.4 66 54.5
TWI73G0973 Tripterygium wilfordii HOM05D002030 ORTHO05D004391 5.9e-13 77.4 60 60.0
Duzib168G0303 Durio zibethinus HOM05D002030 ORTHO05D004391 7.7e-13 77.0 60 60.0
Lj9A621G49 Lonicera japonica HOM05D002030 ORTHO05D004391 7.7e-13 77.0 60 60.0
TAR623G1248 Trochodendron aralioides HOM05D002030 ORTHO05D004391 7.7e-13 77.0 66 56.1
TAR633G1299 Trochodendron aralioides HOM05D002030 ORTHO05D004391 7.7e-13 77.0 66 56.1
CANSAT11G1376 Cannabis sativa HOM05D002030 ORTHO05D004391 1.0e-12 76.6 60 61.7
Migut.N01657 Erythranthe guttata HOM05D002030 ORTHO05D004391 1.0e-12 76.6 60 60.0
Migut.O00475 Erythranthe guttata HOM05D002030 ORTHO05D004391 1.0e-12 76.6 60 60.0
FvH4_7g00080 Fragaria vesca HOM05D002030 ORTHO05D004391 1.0e-12 76.6 60 60.0
FAN01G0191 Fragaria x ananassa HOM05D002030 ORTHO05D004391 1.0e-12 76.6 60 60.0
FAN01G3098 Fragaria x ananassa HOM05D002030 ORTHO05D004391 1.0e-12 76.6 60 60.0
FAN03G0965 Fragaria x ananassa HOM05D002030 ORTHO05D004391 1.0e-12 76.6 60 60.0
FAN06G4832 Fragaria x ananassa HOM05D002030 ORTHO05D004391 1.0e-12 76.6 60 60.0
FAN10G1580 Fragaria x ananassa HOM05D002030 ORTHO05D004391 1.0e-12 76.6 60 60.0
Manes.07G000500 Manihot esculenta HOM05D002030 ORTHO05D004391 1.0e-12 76.6 60 58.3
Sed0004903 Sechium edule HOM05D002030 ORTHO05D004391 1.0e-12 76.6 60 60.0
SEGI_39166 Sequoiadendron giganteum HOM05D002030 ORTHO05D004391 1.0e-12 76.6 66 54.5
HPP92_022742 Vanilla planifolia HOM05D002030 ORTHO05D004391 1.0e-12 76.6 66 57.6
HPP92_022773 Vanilla planifolia HOM05D002030 ORTHO05D004391 1.0e-12 76.6 66 57.6
CAN.G129.46 Capsicum annuum HOM05D002030 ORTHO05D004391 1.3e-12 76.3 60 60.0
Cc02_g26940 Coffea canephora HOM05D002030 ORTHO05D004391 1.3e-12 76.3 60 60.0
DCAR_029593 Daucus carota HOM05D002030 ORTHO05D004391 1.3e-12 76.3 60 56.7
Nitab4.5_0023974g0010 Nicotiana tabacum HOM05D002030 ORTHO05D004391 1.3e-12 76.3 60 60.0
Solyc01g073740.4 Solanum lycopersicum HOM05D002030 ORTHO05D004391 1.3e-12 76.3 60 60.0
Sopen01g033350 Solanum pennellii HOM05D002030 ORTHO05D004391 1.3e-12 76.3 60 60.0
PGSC0003DMG400028982 Solanum tuberosum HOM05D002030 ORTHO05D004391 1.3e-12 76.3 60 60.0
ATR0626G367 Amborella trichopoda HOM05D002030 ORTHO05D004391 1.7e-12 75.9 66 54.5
Actinidia15851 Actinidia chinensis HOM05D002030 ORTHO05D004391 2.3e-12 75.5 60 58.3
Cfa010689 Carpinus fangiana HOM05D002030 ORTHO05D004391 2.3e-12 75.5 58 62.1
Oeu024931.4 Olea europaea HOM05D002030 ORTHO05D004391 2.3e-12 75.5 60 58.3
SGA_v2.0_scaffold4G02232 Striga asiatica HOM05D002030 ORTHO05D004391 2.3e-12 75.5 60 60.0
SGA_v2.0_scaffold95G28770 Striga asiatica HOM05D002030 ORTHO05D004391 2.9e-12 75.1 60 58.3
Lsat_1_v5_gn_4_46541 Lactuca sativa HOM05D002030 ORTHO05D004391 3.8e-12 74.7 60 58.3
Oeu032787.1 Olea europaea HOM05D002030 ORTHO05D004391 3.8e-12 74.7 60 56.7
MSTRG.17066 Avicennia marina HOM05D002030 ORTHO05D004391 5.0e-12 74.3 60 58.3
Nitab4.5_0000468g0060 Nicotiana tabacum HOM05D002030 ORTHO05D004391 5.0e-12 74.3 60 58.3
Hma1.2p1_0293F.1_g116260 Hydrangea macrophylla HOM05D002030 ORTHO05D004391 1.1e-11 73.2 57 57.9
Cre12.g514750 Chlamydomonas reinhardtii HOM05D002030 ORTHO05D004391 1.5e-11 72.8 66 50.0
MCO01G768 Micromonas commoda HOM05D002030 ORTHO05D004391 1.5e-11 72.8 66 51.5
Oeu000987.1 Olea europaea HOM05D002030 ORTHO05D004391 1.5e-11 72.8 60 56.7
Hma1.2p1_0505F.1_g168140 Hydrangea macrophylla HOM05D002030 ORTHO05D004391 3.3e-11 71.6 54 59.3
Haze_26913 Corylus avellana HOM05D002030 ORTHO05D004391 4.2e-11 71.2 63 54.0
unitig_61.g26437 Utricularia gibba HOM05D002030 ORTHO05D004391 5.5e-11 70.9 58 56.9
ATR0626G052 Amborella trichopoda HOM05D002030 ORTHO05D004391 7.2e-11 70.5 58 58.6
Lalb_Chr25g0283641 Lupinus albus HOM05D002030 ORTHO05D004391 9.5e-11 70.1 61 54.1
Psat1g127120 Pisum sativum HOM05D002030 ORTHO05D004391 1.2e-10 69.7 61 52.5
Sed0005598 Sechium edule HOM05D002030 ORTHO05D004391 1.2e-10 69.7 60 56.7
arahy.Tifrunner.gnm1.ann1.PFQ45M Arachis hypogaea HOM05D002030 ORTHO05D004391 1.6e-10 69.3 61 54.1
arahy.Tifrunner.gnm1.ann1.X24NYN Arachis hypogaea HOM05D002030 ORTHO05D004391 1.6e-10 69.3 61 54.1
Lj3g0024225 Lotus japonicus HOM05D002030 ORTHO05D004391 1.6e-10 69.3 61 52.5
Medtr2g061630 Medicago truncatula HOM05D002030 ORTHO05D004391 1.6e-10 69.3 61 54.1
Lalb_Chr20g0108201 Lupinus albus HOM05D002030 ORTHO05D004391 2.1e-10 68.9 61 52.5
SMO118G0428 Selaginella moellendorffii HOM05D002030 ORTHO05D004391 2.1e-10 68.9 66 51.5
Cfa026498 Carpinus fangiana HOM05D002030 ORTHO05D004391 2.8e-10 68.6 66 48.5
Glyma.08G157700 Glycine max HOM05D002030 ORTHO05D004391 4.7e-10 67.8 61 52.5
Glyma.15G268500 Glycine max HOM05D002030 ORTHO05D004391 4.7e-10 67.8 61 52.5
Phvul.005G041600 Phaseolus vulgaris HOM05D002030 ORTHO05D004391 4.7e-10 67.8 61 52.5
TPR.G16151 Trifolium pratense HOM05D002030 ORTHO05D004391 8.0e-10 67.0 61 52.5
Ca_02885_v3 Cicer arietinum L. HOM05D002030 ORTHO05D004391 1.0e-09 66.6 61 52.5
Ca_02887_v3 Cicer arietinum L. HOM05D002030 ORTHO05D004391 1.0e-09 66.6 61 52.5
VMungo1080G0649 Vigna mungo HOM05D002030 ORTHO05D004391 1.0e-09 66.6 61 50.8
CBR_g11008 Chara braunii HOM05D002030 ORTHO05D004391 1.4e-09 66.2 59 49.2
PRCOL_00005650 Prasinoderma coloniale HOM05D002030 ORTHO05D004391 1.4e-09 66.2 63 47.6
Peaxi162Scf00402g00612 Petunia axillaris HOM05D002030 ORTHO05D004391 6.3e-07 57.4 98 36.7
Cfa027058 Carpinus fangiana HOM05D002030 ORTHO05D004391 1.1e-06 56.6 66 43.9


User provided reference genes

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