Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0606300 Oryza sativa ssp. japonica HOM05D001715 ORTHO05D003849 7.5e-35 149.8 69 100.0
Os05g0256000 Oryza sativa ssp. japonica HOM05D001715 ORTHO05D003849 1.1e-20 102.8 97 60.8
Os08g0308100 Oryza sativa ssp. japonica HOM05D001715 ORTHO05D003849 1.1e-20 102.8 97 60.8
AUR62023731 Chenopodium quinoa HOM05D001715 ORTHO05D003849 5.2e-20 100.5 67 74.6
Zm00001eb117170 Zea mays HOM05D001715 ORTHO05D003849 5.2e-20 100.5 97 58.8
Zm00001eb300780 Zea mays HOM05D001715 ORTHO05D003849 5.2e-20 100.5 97 58.8
Hma1.2p1_0188F.1_g082460 Hydrangea macrophylla HOM05D001715 ORTHO05D003849 3.4e-19 97.8 97 58.8
PSO339G4281 Papaver somniferum HOM05D001715 ORTHO05D003849 9.9e-19 96.3 97 57.7
PSO384G1200 Papaver somniferum HOM05D001715 ORTHO05D003849 9.9e-19 96.3 97 57.7
TAR628G1324 Trochodendron aralioides HOM05D001715 ORTHO05D003849 9.9e-19 96.3 97 57.7
MBI06_g32166_MAGBIO Magnolia biondii HOM05D001715 ORTHO05D003849 2.2e-18 95.1 97 56.7
HPP92_019310 Vanilla planifolia HOM05D001715 ORTHO05D003849 2.2e-18 95.1 97 57.7
Nn4g22327 Nelumbo nucifera HOM05D001715 ORTHO05D003849 2.9e-18 94.7 97 56.7
TAR376G0581 Trochodendron aralioides HOM05D001715 ORTHO05D003849 2.9e-18 94.7 97 56.7
Peaxi162Scf00207g01049 Petunia axillaris HOM05D001715 ORTHO05D003849 3.8e-18 94.4 97 56.7
CiPaw.05G161400 Carya illinoinensis HOM05D001715 ORTHO05D003849 4.9e-18 94.0 97 56.7
Nn5g27381 Nelumbo nucifera HOM05D001715 ORTHO05D003849 4.9e-18 94.0 97 55.7
HPP92_011166 Vanilla planifolia HOM05D001715 ORTHO05D003849 4.9e-18 94.0 97 56.7
FvH4_4g35950 Fragaria vesca HOM05D001715 ORTHO05D003849 6.4e-18 93.6 97 55.7
FAN07G0137 Fragaria x ananassa HOM05D001715 ORTHO05D003849 6.4e-18 93.6 97 55.7
FAN12G3604 Fragaria x ananassa HOM05D001715 ORTHO05D003849 6.4e-18 93.6 97 55.7
FAN17G1769 Fragaria x ananassa HOM05D001715 ORTHO05D003849 6.4e-18 93.6 97 55.7
FAN22G0615 Fragaria x ananassa HOM05D001715 ORTHO05D003849 6.4e-18 93.6 97 55.7
RcHm_v2.0_Chr4g0445591 Rosa chinensis HOM05D001715 ORTHO05D003849 6.4e-18 93.6 97 55.7
arahy.Tifrunner.gnm1.ann1.Y0PXUN Arachis hypogaea HOM05D001715 ORTHO05D003849 1.1e-17 92.8 99 56.6
Sabra10G0072700 Salix brachista HOM05D001715 ORTHO05D003849 1.4e-17 92.4 99 53.5
ATR0716G044 Amborella trichopoda HOM05D001715 ORTHO05D003849 1.9e-17 92.0 97 54.6
Pp3c14_22340 Physcomitrium patens HOM05D001715 ORTHO05D003849 1.9e-17 92.0 97 54.6
Aqoxy2G04128 Aquilegia oxysepala HOM05D001715 ORTHO05D003849 2.4e-17 91.7 54 81.5
arahy.Tifrunner.gnm1.ann1.WSL47M Arachis hypogaea HOM05D001715 ORTHO05D003849 2.4e-17 91.7 97 56.7
Haze_23525 Corylus avellana HOM05D001715 ORTHO05D003849 2.4e-17 91.7 97 54.6
COL.COLO4_18345 Corchorus olitorius HOM05D001715 ORTHO05D003849 3.2e-17 91.3 100 55.0
Atru.chr11.1039 Acer truncatum HOM05D001715 ORTHO05D003849 4.2e-17 90.9 97 55.7
Actinidia29380 Actinidia chinensis HOM05D001715 ORTHO05D003849 4.2e-17 90.9 97 55.7
CSS0000267 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D003849 4.2e-17 90.9 97 55.7
CSS0047432 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D003849 4.2e-17 90.9 97 55.7
Ciclev10015917m.g Citrus clementina HOM05D001715 ORTHO05D003849 4.2e-17 90.9 97 55.7
Dinv37405 Davidia involucrata HOM05D001715 ORTHO05D003849 4.2e-17 90.9 97 55.7
Eucgr.F02830 Eucalyptus grandis HOM05D001715 ORTHO05D003849 4.2e-17 90.9 97 55.7
Gohir.A05G102200 Gossypium hirsutum HOM05D001715 ORTHO05D003849 4.2e-17 90.9 97 55.7
Gohir.D05G101900 Gossypium hirsutum HOM05D001715 ORTHO05D003849 4.2e-17 90.9 97 55.7
Gorai.009G106100 Gossypium raimondii HOM05D001715 ORTHO05D003849 4.2e-17 90.9 97 55.7
HanXRQChr09g0266861 Helianthus annuus HOM05D001715 ORTHO05D003849 4.2e-17 90.9 97 54.6
Lj7A418T46 Lonicera japonica HOM05D001715 ORTHO05D003849 4.2e-17 90.9 97 55.7
Potri.008G141400 Populus trichocarpa HOM05D001715 ORTHO05D003849 4.2e-17 90.9 97 54.6
Sabra08G0107300 Salix brachista HOM05D001715 ORTHO05D003849 4.2e-17 90.9 97 54.6
GSVIVG01011562001 Vitis vinifera HOM05D001715 ORTHO05D003849 4.2e-17 90.9 97 54.6
CSS0028339 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D003849 5.4e-17 90.5 97 54.6
CANSAT78G1863 Cannabis sativa HOM05D001715 ORTHO05D003849 5.4e-17 90.5 97 55.7
ClCG10G015390 Citrullus lanatus HOM05D001715 ORTHO05D003849 5.4e-17 90.5 97 55.7
Glyma.09G234100 Glycine max HOM05D001715 ORTHO05D003849 5.4e-17 90.5 97 55.7
Glyma.12G002900 Glycine max HOM05D001715 ORTHO05D003849 5.4e-17 90.5 97 55.7
Medtr2g087640 Medicago truncatula HOM05D001715 ORTHO05D003849 5.4e-17 90.5 97 55.7
Potri.010G100101 Populus trichocarpa HOM05D001715 ORTHO05D003849 5.4e-17 90.5 97 53.6
Rhsim12G0002400 Rhododendron simsii HOM05D001715 ORTHO05D003849 5.4e-17 90.5 99 53.5
Haze_23745 Corylus avellana HOM05D001715 ORTHO05D003849 7.1e-17 90.1 53 79.2
Aqoxy2G01757 Aquilegia oxysepala HOM05D001715 ORTHO05D003849 9.3e-17 89.7 54 79.6
Cpa.g.sc10.260 Carica papaya HOM05D001715 ORTHO05D003849 9.3e-17 89.7 97 54.6
Duzib150G0287 Durio zibethinus HOM05D001715 ORTHO05D003849 9.3e-17 89.7 97 54.6
Duzib168G2366 Durio zibethinus HOM05D001715 ORTHO05D003849 9.3e-17 89.7 97 54.6
ECA246G1236 Erigeron canadensis HOM05D001715 ORTHO05D003849 9.3e-17 89.7 97 54.6
MBI03_g31840_MAGBIO Magnolia biondii HOM05D001715 ORTHO05D003849 9.3e-17 89.7 102 53.9
Peaxi162Scf00495g00212 Petunia axillaris HOM05D001715 ORTHO05D003849 9.3e-17 89.7 97 54.6
Pp3c17_19090 Physcomitrium patens HOM05D001715 ORTHO05D003849 9.3e-17 89.7 54 77.8
Pp3c1_37340 Physcomitrium patens HOM05D001715 ORTHO05D003849 9.3e-17 89.7 54 77.8
QL03p040982 Quercus lobata HOM05D001715 ORTHO05D003849 9.3e-17 89.7 97 54.6
Sc06g0006940 Simmondsia chinensis HOM05D001715 ORTHO05D003849 9.3e-17 89.7 97 54.6
Thecc.09G339300 Theobroma cacao HOM05D001715 ORTHO05D003849 9.3e-17 89.7 97 54.6
vmacro00944 Vaccinium macrocarpon HOM05D001715 ORTHO05D003849 9.3e-17 89.7 97 54.6
Cpa.g.sc2.77 Carica papaya HOM05D001715 ORTHO05D003849 1.2e-16 89.4 97 54.6
MELO3C009841.2 Cucumis melo HOM05D001715 ORTHO05D003849 1.2e-16 89.4 97 54.6
CsaV3_3G041110 Cucumis sativus L. HOM05D001715 ORTHO05D003849 1.2e-16 89.4 97 54.6
HanXRQChr05g0150981 Helianthus annuus HOM05D001715 ORTHO05D003849 1.2e-16 89.4 97 53.6
Lsat_1_v5_gn_6_110981 Lactuca sativa HOM05D001715 ORTHO05D003849 1.2e-16 89.4 97 53.6
MD13G1013500 Malus domestica HOM05D001715 ORTHO05D003849 1.2e-16 89.4 97 53.6
Manes.15G140500 Manihot esculenta HOM05D001715 ORTHO05D003849 1.2e-16 89.4 97 54.6
Prupe.1G340200 Prunus persica HOM05D001715 ORTHO05D003849 1.2e-16 89.4 97 53.6
EL10As1g23124 Beta vulgaris HOM05D001715 ORTHO05D003849 1.6e-16 89.0 97 53.6
Carub.0004s2899 Capsella rubella HOM05D001715 ORTHO05D003849 1.6e-16 89.0 97 53.6
Oeu028628.1 Olea europaea HOM05D001715 ORTHO05D003849 1.6e-16 89.0 66 66.7
Psat6g005120 Pisum sativum HOM05D001715 ORTHO05D003849 1.6e-16 89.0 95 54.7
CARHR141560 Cardamine hirsuta HOM05D001715 ORTHO05D003849 2.1e-16 88.6 97 53.6
ECA234G3447 Erigeron canadensis HOM05D001715 ORTHO05D003849 2.1e-16 88.6 97 53.6
Migut.C01323 Erythranthe guttata HOM05D001715 ORTHO05D003849 2.1e-16 88.6 97 53.6
Migut.C01390 Erythranthe guttata HOM05D001715 ORTHO05D003849 2.1e-16 88.6 97 53.6
Glyma.01G029600 Glycine max HOM05D001715 ORTHO05D003849 2.1e-16 88.6 97 53.6
Gohir.D08G214200 Gossypium hirsutum HOM05D001715 ORTHO05D003849 2.1e-16 88.6 97 53.6
Lj1g0009588 Lotus japonicus HOM05D001715 ORTHO05D003849 2.1e-16 88.6 97 53.6
Lalb_Chr12g0209191 Lupinus albus HOM05D001715 ORTHO05D003849 2.1e-16 88.6 97 53.6
Phvul.002G070400 Phaseolus vulgaris HOM05D001715 ORTHO05D003849 2.1e-16 88.6 97 53.6
Psat1g055120 Pisum sativum HOM05D001715 ORTHO05D003849 2.1e-16 88.6 95 54.7
Sp2g16660 Schrenkiella parvula HOM05D001715 ORTHO05D003849 2.1e-16 88.6 97 53.6
VMungo1215G1757 Vigna mungo HOM05D001715 ORTHO05D003849 2.1e-16 88.6 97 53.6
AagrBONN_evm.TU.Sc2ySwM_368.2541 Anthoceros agrestis HOM05D001715 ORTHO05D003849 2.7e-16 88.2 97 52.6
BcaC03g17465 Brassica carinata HOM05D001715 ORTHO05D003849 2.7e-16 88.2 97 53.6
Thhalv10004580m.g Eutrema salsugineum HOM05D001715 ORTHO05D003849 2.7e-16 88.2 97 53.6
Gohir.A08G197000 Gossypium hirsutum HOM05D001715 ORTHO05D003849 2.7e-16 88.2 97 53.6
Gorai.004G228300 Gossypium raimondii HOM05D001715 ORTHO05D003849 2.7e-16 88.2 97 53.6
Nitab4.5_0000159g0120 Nicotiana tabacum HOM05D001715 ORTHO05D003849 2.7e-16 88.2 97 53.6
Nitab4.5_0000531g0060 Nicotiana tabacum HOM05D001715 ORTHO05D003849 2.7e-16 88.2 97 53.6
PGR042G0006 Punica granatum HOM05D001715 ORTHO05D003849 2.7e-16 88.2 97 54.6
TPR.G39026 Trifolium pratense HOM05D001715 ORTHO05D003849 2.7e-16 88.2 97 53.6
Aa31LG2G5170 Aethionema arabicum HOM05D001715 ORTHO05D003849 3.5e-16 87.8 54 77.8
BcaB07g30156 Brassica carinata HOM05D001715 ORTHO05D003849 3.5e-16 87.8 97 52.6
TWI53G0712 Tripterygium wilfordii HOM05D001715 ORTHO05D003849 3.5e-16 87.8 97 52.6
Ah.16g103720 Amaranthus hybridus HOM05D001715 ORTHO05D003849 4.6e-16 87.4 97 53.6
AagrBONN_evm.TU.Sc2ySwM_362.2638 Anthoceros agrestis HOM05D001715 ORTHO05D003849 4.6e-16 87.4 57 73.7
BcaC06g30989 Brassica carinata HOM05D001715 ORTHO05D003849 4.6e-16 87.4 97 53.6
BcaC06g33818 Brassica carinata HOM05D001715 ORTHO05D003849 4.6e-16 87.4 97 53.6
A02p35490 Brassica napus HOM05D001715 ORTHO05D003849 4.6e-16 87.4 99 52.5
C02p54210 Brassica napus HOM05D001715 ORTHO05D003849 4.6e-16 87.4 99 52.5
BraA02t08550Z Brassica rapa HOM05D001715 ORTHO05D003849 4.6e-16 87.4 99 52.5
CBR_g31442 Chara braunii HOM05D001715 ORTHO05D003849 4.6e-16 87.4 54 74.1
Ca_04152_v3 Cicer arietinum L. HOM05D001715 ORTHO05D003849 4.6e-16 87.4 54 79.6
Ca_08066_v3 Cicer arietinum L. HOM05D001715 ORTHO05D003849 4.6e-16 87.4 54 79.6
Sp4g28330 Schrenkiella parvula HOM05D001715 ORTHO05D003849 4.6e-16 87.4 97 52.6
Sed0005188 Sechium edule HOM05D001715 ORTHO05D003849 4.6e-16 87.4 54 77.8
Sed0027787 Sechium edule HOM05D001715 ORTHO05D003849 4.6e-16 87.4 54 77.8
Hund08580 Selenicereus undatus HOM05D001715 ORTHO05D003849 4.6e-16 87.4 97 53.6
SGA_v2.0_scaffold443G51684 Striga asiatica HOM05D001715 ORTHO05D003849 4.6e-16 87.4 97 53.6
unitig_578.g16115 Utricularia gibba HOM05D002356 ORTHO05D003849 4.6e-16 87.4 97 53.6
Lalb_Chr07g0188201 Lupinus albus HOM05D001715 ORTHO05D003849 6.0e-16 87.0 97 52.6
Mapoly0109s0034 Marchantia polymorpha HOM05D001715 ORTHO05D003849 6.0e-16 87.0 54 77.8
Solyc11g017070.2 Solanum lycopersicum HOM05D001715 ORTHO05D003849 6.0e-16 87.0 97 53.6
Sopen11g009060 Solanum pennellii HOM05D001715 ORTHO05D003849 6.0e-16 87.0 97 53.6
PGSC0003DMG400009231 Solanum tuberosum HOM05D001715 ORTHO05D003849 6.0e-16 87.0 97 53.6
THA.LOC104800464 Tarenaya hassleriana HOM05D001715 ORTHO05D003849 6.0e-16 87.0 97 53.6
TWI74G1126 Tripterygium wilfordii HOM05D001715 ORTHO05D003849 6.0e-16 87.0 97 53.6
Ah.07g201370 Amaranthus hybridus HOM05D001715 ORTHO05D003849 7.8e-16 86.7 97 53.6
AUR62002458 Chenopodium quinoa HOM05D001715 ORTHO05D003849 7.8e-16 86.7 97 52.6
Cc10_g14000 Coffea canephora HOM05D001715 ORTHO05D003849 7.8e-16 86.7 95 52.6
Cc10_g15990 Coffea canephora HOM05D001715 ORTHO05D003849 7.8e-16 86.7 95 52.6
Manes.17G091600 Manihot esculenta HOM05D001715 ORTHO05D003849 7.8e-16 86.7 97 53.6
AL4G45560 Arabidopsis lyrata HOM05D001715 ORTHO05D003849 1.0e-15 86.3 54 77.8
AT2G46280 Arabidopsis thaliana HOM05D001715 ORTHO05D003849 1.0e-15 86.3 54 77.8
SEGI_36259 Sequoiadendron giganteum HOM05D001715 ORTHO05D003849 1.0e-15 86.3 54 75.9
THA.LOC104826461 Tarenaya hassleriana HOM05D001715 ORTHO05D003849 1.0e-15 86.3 97 52.6
SalBow7G1220 Salvia bowleyana HOM05D001715 ORTHO05D003849 1.3e-15 85.9 97 52.6
AagrBONN_evm.TU.Sc2ySwM_228.65 Anthoceros agrestis HOM05D001715 ORTHO05D003849 1.7e-15 85.5 54 74.1
PGR042G0252 Punica granatum HOM05D001715 ORTHO05D003849 1.7e-15 85.5 97 52.6
A06p41160 Brassica napus HOM05D001715 ORTHO05D003849 2.3e-15 85.1 54 77.8
C07p36500 Brassica napus HOM05D001715 ORTHO05D003849 2.3e-15 85.1 54 77.8
BolC7t44169H Brassica oleracea HOM05D001715 ORTHO05D003849 2.3e-15 85.1 54 77.8
BraA06t27039Z Brassica rapa HOM05D001715 ORTHO05D003849 2.3e-15 85.1 54 77.8
MD16G1010400 Malus domestica HOM05D001715 ORTHO05D003849 2.3e-15 85.1 54 75.9
SalBow2G1213 Salvia bowleyana HOM05D001715 ORTHO05D003849 2.3e-15 85.1 54 75.9
MSTRG.1603 Avicennia marina HOM05D001715 ORTHO05D003849 3.0e-15 84.7 55 74.5
PSO081G0127 Papaver somniferum HOM05D001715 ORTHO05D003849 5.1e-15 84.0 97 51.5
PSO170G5376 Papaver somniferum HOM05D001715 ORTHO05D003849 5.1e-15 84.0 97 51.5
Hund08577 Selenicereus undatus HOM05D001715 ORTHO05D003849 5.1e-15 84.0 54 75.9
SGA_v2.0_scaffold118G32631 Striga asiatica HOM05D001715 ORTHO05D003849 5.1e-15 84.0 54 75.9
AL355U10020 Arabidopsis lyrata HOM05D001715 ORTHO05D003849 1.1e-14 82.8 54 74.1
AL4G45590 Arabidopsis lyrata HOM05D001715 ORTHO05D003849 1.1e-14 82.8 54 74.1
PSO170G2454 Papaver somniferum HOM05D001715 ORTHO05D003849 1.5e-14 82.4 97 50.5
AT2G46290 Arabidopsis thaliana HOM05D001715 ORTHO05D003849 1.9e-14 82.0 54 74.1
SMO329G0061 Selaginella moellendorffii HOM05D001715 ORTHO05D003849 1.9e-14 82.0 54 70.4
PSO832G3721 Papaver somniferum HOM05D001715 ORTHO05D003849 4.3e-14 80.9 97 51.5
PSO170G2486 Papaver somniferum HOM05D001715 ORTHO05D003849 5.6e-14 80.5 97 49.5
VMungo1127G0991 Vigna mungo HOM05D001715 ORTHO05D003849 9.6e-14 79.7 54 75.9
MCO09G836 Micromonas commoda HOM05D001715 ORTHO05D003849 1.6e-13 79.0 54 63.0
Cre03.g194400 Chlamydomonas reinhardtii HOM05D001715 ORTHO05D003849 2.1e-13 78.6 72 55.6
RcHm_v2.0_Chr5g0012021 Rosa chinensis HOM05D001715 ORTHO05D003849 2.8e-13 78.2 54 68.5
CSS0032952 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D003849 3.6e-13 77.8 53 71.7
CSS0011302 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D003849 1.8e-12 75.5 48 75.0
PRCOL_00000448 Prasinoderma coloniale HOM05D001715 ORTHO05D003849 1.8e-12 75.5 54 59.3
AUR62023724 Chenopodium quinoa HOM05D001715 ORTHO05D003849 5.3e-12 73.9 54 68.5
Haze_02911 Corylus avellana HOM05D001715 ORTHO05D003849 5.3e-12 73.9 126 41.3
CSS0043226 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D003849 1.5e-11 72.4 48 72.9
ECA232G4326 Erigeron canadensis HOM05D001715 ORTHO05D003849 1.4e-09 65.9 87 48.3
unitig_8.g4902 Utricularia gibba HOM05D001715 ORTHO05D003849 1.5e-06 55.8 41 68.3
Zm00001eb380710 Zea mays HOM05D001893 ORTHO05D443206 2.5e-06 55.1 53 54.7


User provided reference genes

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