Gene: AT2G46280

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G46280
  • Transcript Identifier AT2G46280.2
  • Gene Type Coding gene
  • Location Chr2 : 19003656-19005393 : negative

Gene Family Information

  • ID HOM05D001715
  • #Genes/#Species 378/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G46280.2
  • symbol TRIP-1
  • Alias TIF3I1,TRIP1
  • uniprot Q38884

Descriptions

  • Description TGF-beta receptor interacting protein 1
  • Computational description TGF-beta receptor interacting protein 1 (TRIP-1); FUNCTIONS IN: protein binding, nucleotide binding; INVOLVED IN: response to cadmium ion, response to salt stress; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: male gametophyte, guard cell, root, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT2G46290.1); Has 49007 Blast hits to 22277 proteins in 692 species: Archae - 72; Bacteria - 7331; Metazoa - 19078; Fungi - 11080; Plants - 5389; Viruses - 0; Other Eukaryotes - 6057 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006413
IEA
GOA Databasetranslational initiation
GO:0006412
IEA
GOA Databasetranslation
GO:0046686
IEP
GOA Databaseresponse to cadmium ion
GO:0002183
IEA
GOA Databasecytoplasmic translational initiation
GO:0002183
IBA
Gene Ontologycytoplasmic translational initiation1
GO:0001732
IEA
GOA Databaseformation of cytoplasmic translation initiation complex

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding2
GO:0005515
IEA
InterProprotein binding
GO:0003743
IEA
GOA Databasetranslation initiation factor activity
GO:0003743
IBA
Gene Ontologytranslation initiation factor activity1
GO:0003723
IBA
Gene OntologyRNA binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016282
IEA
GOA Databaseeukaryotic 43S preinitiation complex
GO:0005829
IDA
GOA Databasecytosol
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0005852
IEA
GOA Databaseeukaryotic translation initiation factor 3 complex
GO:0005634
ISM
Gene Ontologynucleus
GO:0033290
IEA
GOA Databaseeukaryotic 48S preinitiation complex
GO:0071541
IBA
Gene Ontologyeukaryotic translation initiation factor 3 complex, eIF3m1
GO:0080008
IPI
Gene OntologyCul4-RING E3 ubiquitin ligase complex3

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR020472 G-protein beta WD-40 repeat
IPR001680 WD40 repeat
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR036322 WD40-repeat-containing domain superfamily
Mapman id Description
17.4.1.3.9 Protein biosynthesis.translation initiation.Pre-Initiation Complex (PIC) module.eIF3 mRNA-to-PIC binding complex.component eIF3i