Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0595200 Oryza sativa ssp. japonica HOM05D006432 ORTHO05D008257 3.7e-146 521.5 271 100.0
Zm00001eb114860 Zea mays HOM05D006432 ORTHO05D008257 2.8e-101 372.5 211 90.0
GSVIVG01027851001 Vitis vinifera HOM05D006432 ORTHO05D008257 6.1e-96 354.8 206 85.4
Thecc.04G259000 Theobroma cacao HOM05D006432 ORTHO05D008257 1.3e-93 347.1 209 80.9
CAN.G220.38 Capsicum annuum HOM05D006432 ORTHO05D008257 1.7e-93 346.7 226 78.3
Sed0005439 Sechium edule HOM05D006432 ORTHO05D008257 2.2e-93 346.3 206 83.0
Hma1.2p1_0385F.1_g141240 Hydrangea macrophylla HOM05D006432 ORTHO05D008257 3.7e-93 345.5 206 82.5
ClCG05G004210 Citrullus lanatus HOM05D006432 ORTHO05D008257 4.8e-93 345.1 253 72.3
CsaV3_3G011940 Cucumis sativus L. HOM05D006432 ORTHO05D008257 1.4e-92 343.6 243 73.7
Potri.008G169100 Populus trichocarpa HOM05D006432 ORTHO05D008257 1.4e-92 343.6 206 82.0
COL.COLO4_15916 Corchorus olitorius HOM05D006432 ORTHO05D008257 2.4e-92 342.8 209 81.3
Solyc09g090330.3 Solanum lycopersicum HOM05D006432 ORTHO05D008257 2.4e-92 342.8 209 80.9
Haze_11417 Corylus avellana HOM05D006432 ORTHO05D008257 3.1e-92 342.4 206 82.0
Cfa014742 Carpinus fangiana HOM05D006432 ORTHO05D008257 4.1e-92 342.0 206 81.1
Actinidia11356 Actinidia chinensis HOM05D006432 ORTHO05D008257 5.3e-92 341.7 206 80.6
CSS0006599 Camellia sinensis var. sinensis HOM05D006432 ORTHO05D008257 6.9e-92 341.3 201 82.1
PGR031G2997 Punica granatum HOM05D006432 ORTHO05D008257 6.9e-92 341.3 206 80.6
Cc03_g05780 Coffea canephora HOM05D006432 ORTHO05D008257 9.1e-92 340.9 206 83.5
Sabra08G0128900 Salix brachista HOM05D006432 ORTHO05D008257 9.1e-92 340.9 206 80.6
PGSC0003DMG400017164 Solanum tuberosum HOM05D006432 ORTHO05D008257 1.5e-91 340.1 209 79.9
FAN17G1327 Fragaria x ananassa HOM05D006432 ORTHO05D008257 3.4e-91 339.0 277 66.1
Glyma.20G207100 Glycine max HOM05D006432 ORTHO05D008257 5.9e-91 338.2 230 74.8
Actinidia39914 Actinidia chinensis HOM05D006432 ORTHO05D008257 1.0e-90 337.4 216 77.3
MELO3C006407.2 Cucumis melo HOM05D006432 ORTHO05D008257 1.0e-90 337.4 239 73.2
Peaxi162Scf00392g00732 Petunia axillaris HOM05D006432 ORTHO05D008257 1.0e-90 337.4 204 81.9
Manes.15G043100 Manihot esculenta HOM05D006432 ORTHO05D008257 1.3e-90 337.0 206 80.1
Sc13g0005860 Simmondsia chinensis HOM05D006432 ORTHO05D008257 1.3e-90 337.0 206 80.6
EL10Ac3g04982 Beta vulgaris HOM05D006432 ORTHO05D008257 2.2e-90 336.3 238 72.7
MD16G1221800 Malus domestica HOM05D006432 ORTHO05D008257 2.2e-90 336.3 216 76.9
Nitab4.5_0000044g0560 Nicotiana tabacum HOM05D006432 ORTHO05D008257 2.2e-90 336.3 220 77.3
Dinv27072 Davidia involucrata HOM05D006432 ORTHO05D008257 3.8e-90 335.5 206 80.1
RcHm_v2.0_Chr4g0394281 Rosa chinensis HOM05D006432 ORTHO05D008257 5.0e-90 335.1 236 73.3
Ah.13g072590 Amaranthus hybridus HOM05D006432 ORTHO05D008257 8.5e-90 334.3 225 76.0
FAN22G0893 Fragaria x ananassa HOM05D006432 ORTHO05D008257 8.5e-90 334.3 274 66.1
TWI73G0471 Tripterygium wilfordii HOM05D006432 ORTHO05D008257 8.5e-90 334.3 209 77.5
FAN12G0128 Fragaria x ananassa HOM05D006432 ORTHO05D008257 1.1e-89 334.0 277 65.0
MBI07_g31085_MAGBIO Magnolia biondii HOM05D006432 ORTHO05D008257 1.1e-89 334.0 206 79.6
Prupe.1G042200 Prunus persica HOM05D006432 ORTHO05D008257 1.9e-89 333.2 235 72.3
Nitab4.5_0000596g0040 Nicotiana tabacum HOM05D006432 ORTHO05D008257 2.5e-89 332.8 245 72.7
Hund11907 Selenicereus undatus HOM05D006432 ORTHO05D008257 2.5e-89 332.8 221 76.0
Atru.chr4.2005 Acer truncatum HOM05D006432 ORTHO05D008257 3.2e-89 332.4 211 80.6
Ciclev10007095m.g Citrus clementina HOM05D006432 ORTHO05D008257 3.2e-89 332.4 204 80.4
Sopen09g033230 Solanum pennellii HOM05D006432 ORTHO05D008257 4.2e-89 332.0 196 83.2
TPR.G10084 Trifolium pratense HOM05D006432 ORTHO05D008257 4.2e-89 332.0 207 78.7
vmacro15458 Vaccinium macrocarpon HOM05D006432 ORTHO05D008257 5.5e-89 331.6 204 79.9
AUR62015546 Chenopodium quinoa HOM05D006432 ORTHO05D008257 1.6e-88 330.1 195 83.6
QL06p019206 Quercus lobata HOM05D006432 ORTHO05D008257 2.1e-88 329.7 201 81.1
VMungo0720G1276 Vigna mungo HOM05D006432 ORTHO05D008257 2.1e-88 329.7 217 77.0
Rhsim02G0041500 Rhododendron simsii HOM05D006432 ORTHO05D008257 2.7e-88 329.3 198 80.3
MSTRG.9882 Avicennia marina HOM05D006432 ORTHO05D008257 3.6e-88 328.9 208 78.4
AUR62002163 Chenopodium quinoa HOM05D006432 ORTHO05D008257 6.1e-88 328.2 195 83.1
Migut.N00285 Erythranthe guttata HOM05D006432 ORTHO05D008257 1.0e-87 327.4 265 67.2
Gohir.D09G229900 Gossypium hirsutum HOM05D006432 ORTHO05D008257 1.4e-87 327.0 209 76.6
HanXRQChr14g0434951 Helianthus annuus HOM05D006432 ORTHO05D008257 1.4e-87 327.0 239 70.3
Duzib052G0458 Durio zibethinus HOM05D006432 ORTHO05D008257 1.8e-87 326.6 200 81.0
Ca_09849_v3 Cicer arietinum L. HOM05D006432 ORTHO05D008257 2.3e-87 326.2 206 77.2
Gohir.A09G228800 Gossypium hirsutum HOM05D006432 ORTHO05D008257 5.1e-87 325.1 209 76.1
Gorai.006G252600 Gossypium raimondii HOM05D006432 ORTHO05D008257 5.1e-87 325.1 209 76.6
CiPaw.01G181700 Carya illinoinensis HOM05D006432 ORTHO05D008257 6.7e-87 324.7 206 78.2
Lalb_Chr21g0312161 Lupinus albus HOM05D006432 ORTHO05D008257 8.8e-87 324.3 240 69.2
AL3G38060 Arabidopsis lyrata HOM05D006432 ORTHO05D008257 4.4e-86 322.0 213 73.2
CANSAT78G0744 Cannabis sativa HOM05D006432 ORTHO05D008257 4.4e-86 322.0 209 75.6
Lj5g0003574 Lotus japonicus HOM05D006432 ORTHO05D008257 5.7e-86 321.6 209 77.5
Aa31LG8G9890 Aethionema arabicum HOM05D006432 ORTHO05D008257 7.4e-86 321.2 210 72.4
A07p09040 Brassica napus HOM05D006432 ORTHO05D008257 9.7e-86 320.9 210 73.8
CDE04G3487 Ceratophyllum demersum HOM05D006432 ORTHO05D008257 9.7e-86 320.9 206 77.2
Psat6g122560 Pisum sativum HOM05D006432 ORTHO05D008257 9.7e-86 320.9 268 65.3
Lsat_1_v5_gn_2_40021 Lactuca sativa HOM05D006432 ORTHO05D008257 1.7e-85 320.1 206 75.2
Medtr1g075660 Medicago truncatula HOM05D006432 ORTHO05D008257 1.7e-85 320.1 231 70.6
AT3G23400 Arabidopsis thaliana HOM05D006432 ORTHO05D008257 2.2e-85 319.7 208 74.5
Eucgr.H00144 Eucalyptus grandis HOM05D006432 ORTHO05D008257 4.8e-85 318.5 221 74.2
Oeu059409.1 Olea europaea HOM05D006432 ORTHO05D008257 4.8e-85 318.5 209 75.1
PSO478G2331 Papaver somniferum HOM05D006432 ORTHO05D008257 4.8e-85 318.5 198 78.3
Sp3g21070 Schrenkiella parvula HOM05D006432 ORTHO05D008257 1.4e-84 317.0 268 61.9
Carub.0003s2366 Capsella rubella HOM05D006432 ORTHO05D008257 1.8e-84 316.6 213 72.3
Aqoxy5G00185 Aquilegia oxysepala HOM05D006432 ORTHO05D008257 2.4e-84 316.2 201 77.1
Lalb_Chr06g0169201 Lupinus albus HOM05D006432 ORTHO05D008257 2.4e-84 316.2 239 69.0
BraA07t28698Z Brassica rapa HOM05D006432 ORTHO05D008257 3.1e-84 315.8 210 72.4
ECA240G3223 Erigeron canadensis HOM05D002023 ORTHO05D002049 4.1e-84 315.5 227 70.0
BolC7t41898H Brassica oleracea HOM05D006432 ORTHO05D008257 7.0e-84 314.7 208 73.1
BcaC06g35517 Brassica carinata HOM05D006432 ORTHO05D008257 1.2e-83 313.9 208 73.1
Thhalv10021276m.g Eutrema salsugineum HOM05D006432 ORTHO05D008257 2.0e-83 313.2 266 63.5
PSO017G5682 Papaver somniferum HOM05D006432 ORTHO05D008257 2.0e-83 313.2 198 76.8
C07p14010 Brassica napus HOM05D006432 ORTHO05D008257 5.9e-83 311.6 208 72.6
CARHR099370 Cardamine hirsuta HOM05D006432 ORTHO05D008257 5.9e-83 311.6 204 73.5
ATR0582G319 Amborella trichopoda HOM05D006432 ORTHO05D008257 7.7e-83 311.2 195 79.0
THA.LOC104804760 Tarenaya hassleriana HOM05D006432 ORTHO05D008257 1.0e-82 310.8 224 67.9
Lj3A686T58 Lonicera japonica HOM05D006432 ORTHO05D008257 8.5e-82 307.8 202 75.2
Nn3g19719 Nelumbo nucifera HOM05D006432 ORTHO05D008257 4.4e-78 295.4 208 73.1
Hma1.2p1_0385F.1_g141230 Hydrangea macrophylla HOM05D006432 ORTHO05D008257 1.7e-77 293.5 178 80.9
Glyma.10G182900 Glycine max HOM05D006432 ORTHO05D008257 3.1e-76 289.3 169 81.7
HPP92_005402 Vanilla planifolia HOM05D006432 ORTHO05D008257 2.1e-72 276.6 204 69.1
MD13G1216500 Malus domestica HOM05D006432 ORTHO05D008257 1.8e-71 273.5 230 63.5
unitig_0.g1188 Utricularia gibba HOM05D006432 ORTHO05D008257 2.2e-69 266.5 183 73.8
Pp3c11_17240 Physcomitrium patens HOM05D006432 ORTHO05D008257 6.3e-69 265.0 248 56.5
SEGI_38471 Sequoiadendron giganteum HOM05D006432 ORTHO05D008257 4.2e-65 252.3 213 60.6
AagrBONN_evm.TU.Sc2ySwM_228.2035 Anthoceros agrestis HOM05D006432 ORTHO05D008257 4.7e-64 248.8 251 53.4
SMO141G0176 Selaginella moellendorffii HOM05D006432 ORTHO05D008257 2.4e-60 236.5 232 55.6
Nn1g02871 Nelumbo nucifera HOM05D006432 ORTHO05D008257 5.0e-58 228.8 153 73.2
BcaB05g22938 Brassica carinata HOM05D006432 ORTHO05D008257 1.9e-57 226.9 177 64.4
Oeu055241.1 Olea europaea HOM05D000508 ORTHO05D000371 6.8e-55 218.4 207 56.5
arahy.Tifrunner.gnm1.ann1.508QQU Arachis hypogaea HOM05D006432 ORTHO05D008257 5.9e-51 205.3 114 84.2
Cpa.g.sc44.36 Carica papaya HOM05D006432 ORTHO05D008257 5.9e-51 205.3 110 87.3
arahy.Tifrunner.gnm1.ann1.X8C4EZ Arachis hypogaea HOM05D006432 ORTHO05D008257 7.8e-51 204.9 114 83.3
SGA_v2.0_scaffold43G16214 Striga asiatica HOM05D006432 ORTHO05D008257 1.7e-50 203.8 114 82.5
Mapoly0012s0134 Marchantia polymorpha HOM05D006432 ORTHO05D008257 6.1e-48 195.3 283 44.5
Dinv29840 Davidia involucrata HOM05D006432 ORTHO05D008257 1.0e-47 194.5 120 78.3
SGA_v2.0_scaffold370G50119 Striga asiatica HOM05D006432 ORTHO05D008257 1.2e-43 181.0 105 79.0
CBR_g30839 Chara braunii HOM05D006432 ORTHO05D008257 1.6e-43 180.6 249 43.4
CDE03G0089 Ceratophyllum demersum HOM05D006432 ORTHO05D008257 3.3e-41 172.9 114 72.8
Cpa.g.sc44.33 Carica papaya HOM05D006432 ORTHO05D008257 2.5e-33 146.7 92 82.6
FvH4_4g04000 Fragaria vesca HOM05D003789 ORTHO05D004158 4.3e-33 146.0 173 54.3
Phvul.010G070111 Phaseolus vulgaris HOM05D006432 ORTHO05D008257 4.4e-30 136.0 119 63.0
Cre02.g143667 Chlamydomonas reinhardtii HOM05D006432 ORTHO05D008257 1.7e-29 134.0 274 35.8
BcaB04g17238 Brassica carinata HOM05D006432 ORTHO05D008257 4.9e-29 132.5 107 61.7
BcaB01g01688 Brassica carinata HOM05D006432 ORTHO05D008257 2.4e-28 130.2 114 56.1
BcaB02g08931 Brassica carinata HOM05D006432 ORTHO05D008257 3.2e-28 129.8 80 71.2
Nn1g02875 Nelumbo nucifera HOM05D006432 ORTHO05D008257 1.4e-23 114.4 85 74.1
MCO05G338 Micromonas commoda HOM05D006432 ORTHO05D008257 7.6e-22 108.6 207 37.2
BcaB07g33946 Brassica carinata HOM05D006432 ORTHO05D008257 1.3e-18 97.8 62 67.7
Os05g0304200 Oryza sativa ssp. japonica HOM05D006432 ORTHO05D008257 6.6e-18 95.5 73 71.2
ATR0684G013 Amborella trichopoda HOM05D003483 ORTHO05D004101 1.6e-11 74.3 195 32.8
arahy.Tifrunner.gnm1.ann1.MUYK2J Arachis hypogaea HOM05D003483 ORTHO05D004101 1.3e-10 71.2 197 33.5
TAR376G1167 Trochodendron aralioides HOM05D003483 ORTHO05D004101 1.3e-10 71.2 195 32.3
Pp3c23_15450 Physcomitrium patens HOM05D003483 ORTHO05D004101 3.9e-10 69.7 199 29.6
Glyma.15G047700 Glycine max HOM05D003483 ORTHO05D004101 8.7e-10 68.6 197 32.0
PRCOL_00002195 Prasinoderma coloniale HOM05D006432 ORTHO05D008257 1.9e-09 67.4 155 36.8
arahy.Tifrunner.gnm1.ann1.G5V2PN Arachis hypogaea HOM05D003483 ORTHO05D004101 2.5e-09 67.0 197 32.0
Cre03.g197650 Chlamydomonas reinhardtii HOM05D006432 ORTHO05D044141 2.5e-09 67.0 222 28.8
Glyma.08G185000 Glycine max HOM05D003483 ORTHO05D004101 2.5e-09 67.0 197 31.5
Nn1g08897 Nelumbo nucifera HOM05D003483 ORTHO05D004101 2.5e-09 67.0 195 30.8
Sabra10G0037800 Salix brachista HOM05D006432 ORTHO05D008257 3.3e-09 66.6 41 68.3
Cc02_g22350 Coffea canephora HOM05D003483 ORTHO05D004101 1.3e-08 64.7 200 30.5
CDE02G1133 Ceratophyllum demersum HOM05D003483 ORTHO05D004101 1.6e-08 64.3 195 32.3
CsaV3_1G045010 Cucumis sativus L. HOM05D003483 ORTHO05D004101 2.1e-08 63.9 197 32.0
Sed0016447 Sechium edule HOM05D003483 ORTHO05D004101 2.1e-08 63.9 197 32.5
MELO3C010097.2 Cucumis melo HOM05D003483 ORTHO05D004101 2.8e-08 63.5 197 31.0
Eucgr.I02715 Eucalyptus grandis HOM05D003483 ORTHO05D004101 2.8e-08 63.5 227 29.5
Medtr2g007640 Medicago truncatula HOM05D003483 ORTHO05D004101 2.8e-08 63.5 206 31.1
SMO347G0483 Selaginella moellendorffii HOM05D003483 ORTHO05D004101 2.8e-08 63.5 197 30.5
MCO15G394 Micromonas commoda HOM05D003483 ORTHO05D004101 3.6e-08 63.2 215 28.8
Actinidia39049 Actinidia chinensis HOM05D003483 ORTHO05D004101 4.8e-08 62.8 197 31.5
MBI03_g28296_MAGBIO Magnolia biondii HOM05D003483 ORTHO05D004101 4.8e-08 62.8 194 30.9
PGR142G1721 Punica granatum HOM05D003483 ORTHO05D004101 6.2e-08 62.4 195 30.3
GSVIVG01022998001 Vitis vinifera HOM05D003483 ORTHO05D004101 8.1e-08 62.0 195 29.7
MCO03G426 Micromonas commoda HOM05D003483 ORTHO05D004101 1.1e-07 61.6 207 30.9
Potri.003G020700 Populus trichocarpa HOM05D003483 ORTHO05D004101 1.1e-07 61.6 205 29.8
CANSAT11G2020 Cannabis sativa HOM05D003483 ORTHO05D004101 1.4e-07 61.2 200 30.0
Ca_00085_v3 Cicer arietinum L. HOM05D003483 ORTHO05D004101 1.4e-07 61.2 223 29.6
PRCOL_00005437 Prasinoderma coloniale HOM05D003483 ORTHO05D004101 1.4e-07 61.2 198 31.8
CSS0026849 Camellia sinensis var. sinensis HOM05D003483 ORTHO05D004101 1.8e-07 60.8 195 30.8
Manes.07G014500 Manihot esculenta HOM05D003483 ORTHO05D004101 1.8e-07 60.8 205 30.7
Medtr2g007300 Medicago truncatula HOM05D003483 ORTHO05D004101 1.8e-07 60.8 196 28.1
AagrBONN_evm.TU.Sc2ySwM_344.1832 Anthoceros agrestis HOM05D003483 ORTHO05D004101 2.4e-07 60.5 199 27.1
Ciclev10002308m.g Citrus clementina HOM05D003483 ORTHO05D004101 2.4e-07 60.5 197 29.4
Eucgr.I02716 Eucalyptus grandis HOM05D003483 ORTHO05D004101 2.4e-07 60.5 208 31.2
FAN18G3047 Fragaria x ananassa HOM05D003483 ORTHO05D004101 2.4e-07 60.5 197 28.9
COL.COLO4_17881 Corchorus olitorius HOM05D003483 ORTHO05D004101 3.1e-07 60.1 197 28.9
THA.LOC104824018 Tarenaya hassleriana HOM05D003483 ORTHO05D004101 3.1e-07 60.1 205 28.8
Phvul.006G213100 Phaseolus vulgaris HOM05D003483 ORTHO05D004101 4.0e-07 59.7 200 30.0
vmacro01768 Vaccinium macrocarpon HOM05D003483 ORTHO05D004101 4.0e-07 59.7 197 29.4
MD15G1421400 Malus domestica HOM05D003483 ORTHO05D004101 5.3e-07 59.3 214 27.6
PSO017G4111 Papaver somniferum HOM05D003483 ORTHO05D004101 5.3e-07 59.3 194 29.4
PGR142G0005 Punica granatum HOM05D003483 ORTHO05D004101 5.3e-07 59.3 217 28.1
VMungo0540G1714 Vigna mungo HOM05D003483 ORTHO05D004101 5.3e-07 59.3 200 30.0
Aqoxy5G02410 Aquilegia oxysepala HOM05D003483 ORTHO05D004101 9.0e-07 58.5 198 28.3
Lj6g0009955 Lotus japonicus HOM05D003483 ORTHO05D004101 1.2e-06 58.2 196 29.1
THA.LOC104818465 Tarenaya hassleriana HOM05D005663 ORTHO05D007258 1.2e-06 58.2 210 24.3
Lj9A307T41 Lonicera japonica HOM05D003483 ORTHO05D004101 1.5e-06 57.8 194 27.8
Migut.N01039 Erythranthe guttata HOM05D003483 ORTHO05D004101 2.0e-06 57.4 195 27.2
TWI59G0863 Tripterygium wilfordii HOM05D007122 ORTHO05D008918 2.0e-06 57.4 224 27.2
Zm00001eb054390 Zea mays HOM05D003483 ORTHO05D004101 2.6e-06 57.0 288 27.8
Actinidia33027 Actinidia chinensis HOM05D007122 ORTHO05D008918 3.4e-06 56.6 232 26.3
ECA240G0807 Erigeron canadensis HOM05D003483 ORTHO05D004101 3.4e-06 56.6 195 28.7
Gorai.012G160700 Gossypium raimondii HOM05D003483 ORTHO05D004101 3.4e-06 56.6 197 29.4
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 3.4e-06 56.6 165 27.9
THA.LOC104825685 Tarenaya hassleriana HOM05D003483 ORTHO05D004101 3.4e-06 56.6 202 26.7
MSTRG.5236 Avicennia marina HOM05D003483 ORTHO05D004101 4.5e-06 56.2 204 27.5
PGR042G2951 Punica granatum HOM05D007122 ORTHO05D008918 4.5e-06 56.2 175 30.9
Aa31LG2G6290 Aethionema arabicum HOM05D003483 ORTHO05D004101 5.8e-06 55.8 194 28.4
Cfa005534 Carpinus fangiana HOM05D003483 ORTHO05D004101 7.6e-06 55.5 195 27.7
HanXRQChr03g0066831 Helianthus annuus HOM05D003483 ORTHO05D004101 7.6e-06 55.5 195 28.2
Manes.01G237100 Manihot esculenta HOM05D007122 ORTHO05D008918 7.6e-06 55.5 204 26.5
PGSC0003DMG400023753 Solanum tuberosum HOM05D003483 ORTHO05D004101 7.6e-06 55.5 197 28.9
GSVIVG01022995001 Vitis vinifera HOM05D003483 ORTHO05D004101 9.9e-06 55.1 195 29.7
GSVIVG01027487001 Vitis vinifera HOM05D007122 ORTHO05D008918 9.9e-06 55.1 222 25.2


User provided reference genes

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