Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0594400 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 7.7e-283 976.5 493 100.0
Os11g0593100 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 1.2e-65 255.0 487 35.5
Os08g0164100 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 8.5e-64 248.8 486 36.8
Os11g0593700 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 1.0e-61 241.9 474 34.0
Os11g0593500 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 4.0e-61 240.0 511 33.9
Os11g0593600 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 1.7e-56 224.6 476 32.6
Os12g0152200 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 1.8e-42 177.9 476 30.5
Os12g0153400 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 1.8e-42 177.9 476 30.5
Zm00001eb070040 Zea mays HOM05D000151 ORTHO05D000074 8.9e-37 159.1 465 28.2
Zm00001eb069880 Zea mays HOM05D000151 ORTHO05D000074 1.5e-36 158.3 462 28.4
Zm00001eb069750 Zea mays HOM05D000151 ORTHO05D000074 5.8e-36 156.4 462 27.5
Zm00001eb069960 Zea mays HOM05D000151 ORTHO05D000074 5.8e-36 156.4 462 27.5
Os01g0328300 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 3.7e-35 153.7 488 27.7
Zm00001eb069540 Zea mays HOM05D000151 ORTHO05D000074 4.9e-35 153.3 462 26.8
Os11g0584100 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 6.4e-35 152.9 475 26.1
Zm00001eb069820 Zea mays HOM05D000151 ORTHO05D000074 1.9e-34 151.4 463 27.4
Os11g0582700 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 9.2e-34 149.1 465 26.5
Os03g0720400 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 6.0e-33 146.4 465 25.6
Os11g0579600 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 1.7e-32 144.8 466 24.5
Os01g0327900 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 5.0e-32 143.3 443 27.3
Os03g0802100 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 3.3e-31 140.6 466 24.9
Zm00001eb070030 Zea mays HOM05D000151 ORTHO05D000074 7.5e-28 129.4 204 32.8
Zm00001eb049550 Zea mays HOM05D000151 ORTHO05D000074 9.8e-28 129.0 469 25.6
Zm00001eb049440 Zea mays HOM05D000151 ORTHO05D000074 3.7e-27 127.1 472 25.4
Zm00001eb049420 Zea mays HOM05D000151 ORTHO05D000074 8.3e-27 125.9 472 25.4
Os12g0607800 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 1.1e-23 115.5 495 25.9
Zm00001eb272730 Zea mays HOM05D000151 ORTHO05D000074 3.6e-22 110.5 509 26.9
Os06g0707300 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 1.2e-20 105.5 501 25.0
Zm00001eb049520 Zea mays HOM05D000151 ORTHO05D000074 7.1e-18 96.3 179 33.0
Cc10_g00920 Coffea canephora HOM05D000151 ORTHO05D000074 1.6e-17 95.1 471 24.0
Os03g0601100 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 3.0e-16 90.9 479 25.9
Os11g0574725 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 3.0e-16 90.9 133 36.1
Os11g0578700 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 1.9e-15 88.2 162 30.9
Os11g0598000 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 1.9e-15 88.2 118 33.1
TAR636G1120 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.9e-15 88.2 483 24.2
Os08g0426100 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 2.5e-15 87.8 155 36.8
Os03g0708200 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 2.8e-14 84.3 253 29.6
Os03g0600800 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 8.1e-14 82.8 216 31.9
TWI56G0068 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 1.1e-13 82.4 205 28.8
Zm00001eb069560 Zea mays HOM05D000151 ORTHO05D000074 1.1e-13 82.4 111 36.9
Zm00001eb049400 Zea mays HOM05D000151 ORTHO05D000074 1.4e-13 82.0 123 32.5
TAR636G2770 Trochodendron aralioides HOM05D000151 ORTHO05D000074 8.9e-13 79.3 469 23.0
Manes.05G141800 Manihot esculenta HOM05D000151 ORTHO05D000074 1.2e-12 79.0 486 22.6
TWI12G0155 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 1.5e-12 78.6 214 27.6
TWI56G0047 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 2.6e-12 77.8 207 28.5
TAR636G0604 Trochodendron aralioides HOM05D000151 ORTHO05D000074 4.4e-12 77.0 469 23.7
Rhsim12G0122800 Rhododendron simsii HOM05D000151 ORTHO05D000074 5.8e-12 76.6 508 23.0
PGR031G1696 Punica granatum HOM05D000151 ORTHO05D000074 1.7e-11 75.1 487 24.0
CANSAT25G2327 Cannabis sativa HOM05D000151 ORTHO05D000074 2.2e-11 74.7 220 25.9
Actinidia15471 Actinidia chinensis HOM05D000151 ORTHO05D000074 1.1e-10 72.4 215 26.0
PGSC0003DMG400018077 Solanum tuberosum HOM05D000151 ORTHO05D000074 1.1e-10 72.4 488 22.3
Zm00001eb247770 Zea mays HOM05D000151 ORTHO05D000074 1.1e-10 72.4 302 25.8
CiPaw.06G077200 Carya illinoinensis HOM05D000151 ORTHO05D000074 1.9e-10 71.6 481 21.8
MBI06_g17230_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 1.9e-10 71.6 207 29.0
TAR636G0046 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.9e-10 71.6 425 24.7
Thecc.08G054100 Theobroma cacao HOM05D000151 ORTHO05D000074 2.4e-10 71.2 212 24.1
MD10G1231500 Malus domestica HOM05D000151 ORTHO05D000074 4.2e-10 70.5 131 31.3
TAR636G0632 Trochodendron aralioides HOM05D000151 ORTHO05D000074 7.1e-10 69.7 469 22.0
COL.COLO4_26063 Corchorus olitorius HOM05D000151 ORTHO05D000074 1.6e-09 68.6 220 24.5
Eucgr.F03527 Eucalyptus grandis HOM05D000151 ORTHO05D000074 1.6e-09 68.6 220 28.2
MD08G1006100 Malus domestica HOM05D000151 ORTHO05D000074 2.1e-09 68.2 220 26.8
Os01g0942200 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 2.1e-09 68.2 494 23.7
Peaxi162Scf00045g01536 Petunia axillaris HOM05D000151 ORTHO05D000074 2.1e-09 68.2 209 25.8
TAR636G2287 Trochodendron aralioides HOM05D000151 ORTHO05D000074 2.1e-09 68.2 485 22.7
CiPaw.06G046500 Carya illinoinensis HOM05D000151 ORTHO05D000074 2.7e-09 67.8 467 22.3
Oeu017909.1 Olea europaea HOM05D000151 ORTHO05D000074 3.5e-09 67.4 213 25.4
TAR636G1293 Trochodendron aralioides HOM05D000151 ORTHO05D000074 3.5e-09 67.4 475 21.9
MBI15_g47572_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 4.6e-09 67.0 210 27.1
MELO3C017000.2 Cucumis melo HOM05D000151 ORTHO05D000074 7.8e-09 66.2 207 25.1
MBI15_g35731_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 1.0e-08 65.9 207 26.6
MD15G1005500 Malus domestica HOM05D000151 ORTHO05D000074 1.0e-08 65.9 220 26.8
TWI63G1457 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 1.0e-08 65.9 331 22.1
Dinv01675 Davidia involucrata HOM05D000151 ORTHO05D000074 2.3e-08 64.7 207 26.6
TAR628G1200 Trochodendron aralioides HOM05D000151 ORTHO05D000074 2.3e-08 64.7 214 26.2
TAR636G3348 Trochodendron aralioides HOM05D000151 ORTHO05D000074 2.3e-08 64.7 473 22.0
MSTRG.1137 Avicennia marina HOM05D000151 ORTHO05D000074 3.0e-08 64.3 207 25.1
PGSC0003DMG400018078 Solanum tuberosum HOM05D000151 ORTHO05D000074 3.0e-08 64.3 485 22.5
TAR636G0252 Trochodendron aralioides HOM05D000151 ORTHO05D000074 3.9e-08 63.9 475 21.7
TAR636G3671 Trochodendron aralioides HOM05D000151 ORTHO05D000074 3.9e-08 63.9 469 21.5
Nn6g31858 Nelumbo nucifera HOM05D000151 ORTHO05D000074 5.1e-08 63.5 211 26.5
Nitab4.5_0003259g0030 Nicotiana tabacum HOM05D000151 ORTHO05D000074 5.1e-08 63.5 193 25.4
Dinv27133 Davidia involucrata HOM05D000151 ORTHO05D000074 6.6e-08 63.2 126 31.0
Migut.C00911 Erythranthe guttata HOM05D000151 ORTHO05D000074 8.7e-08 62.8 206 24.8
Peaxi162Scf00017g00215 Petunia axillaris HOM05D000151 ORTHO05D000074 8.7e-08 62.8 485 23.9
Prupe.1G358000 Prunus persica HOM05D000151 ORTHO05D000074 8.7e-08 62.8 218 23.9
TAR636G2826 Trochodendron aralioides HOM05D000151 ORTHO05D000074 8.7e-08 62.8 378 23.5
QL05p064445 Quercus lobata HOM05D000151 ORTHO05D000074 1.1e-07 62.4 208 23.6
CSS0022996 Camellia sinensis var. sinensis HOM05D000151 ORTHO05D000074 1.5e-07 62.0 279 22.6
DCAR_023003 Daucus carota HOM05D000151 ORTHO05D000074 1.5e-07 62.0 211 24.2
Duzib116G0495 Durio zibethinus HOM05D000151 ORTHO05D000074 1.5e-07 62.0 207 25.1
TAR626G1895 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.5e-07 62.0 487 22.4
CiPaw.08G070000 Carya illinoinensis HOM05D000151 ORTHO05D000074 1.9e-07 61.6 283 21.9
Hma1.2p1_0792F.1_g218540 Hydrangea macrophylla HOM05D000151 ORTHO05D000074 1.9e-07 61.6 476 21.2
Nitab4.5_0000025g0120 Nicotiana tabacum HOM05D000151 ORTHO05D000074 1.9e-07 61.6 191 25.1
Nitab4.5_0000789g0030 Nicotiana tabacum HOM05D000151 ORTHO05D000074 1.9e-07 61.6 392 23.0
Prupe.6G184200 Prunus persica HOM05D000151 ORTHO05D000074 1.9e-07 61.6 122 28.7
QL02p013380 Quercus lobata HOM05D000151 ORTHO05D000074 1.9e-07 61.6 210 23.3
RcHm_v2.0_Chr6g0303821 Rosa chinensis HOM05D000151 ORTHO05D000074 1.9e-07 61.6 209 23.0
PGSC0003DMG402009543 Solanum tuberosum HOM05D000151 ORTHO05D000074 1.9e-07 61.6 209 24.4
CsaV3_4G037010 Cucumis sativus L. HOM05D000151 ORTHO05D000074 2.5e-07 61.2 207 25.1
Lj2P493T31 Lonicera japonica HOM05D000151 ORTHO05D000074 3.3e-07 60.8 172 28.5
Rhsim09G0042100 Rhododendron simsii HOM05D000151 ORTHO05D000074 3.3e-07 60.8 396 23.0
TWI63G0828 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 3.3e-07 60.8 222 21.2
Aqoxy5G01063 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 4.3e-07 60.5 221 26.2
Lj1P1142T22 Lonicera japonica HOM05D000151 ORTHO05D000074 4.3e-07 60.5 165 29.1
MD16G1228400 Malus domestica HOM05D000151 ORTHO05D000074 4.3e-07 60.5 243 24.3
Manes.07G048800 Manihot esculenta HOM05D000151 ORTHO05D000074 4.3e-07 60.5 217 23.5
Solyc08g006180.4 Solanum lycopersicum HOM05D000151 ORTHO05D000074 4.3e-07 60.5 216 23.6
HPP92_008148 Vanilla planifolia HOM05D000151 ORTHO05D000074 4.3e-07 60.5 506 21.7
Cfa014025 Carpinus fangiana HOM05D000151 ORTHO05D000074 5.6e-07 60.1 263 24.7
Lj2P549T12 Lonicera japonica HOM05D000151 ORTHO05D000074 5.6e-07 60.1 212 25.9
Manes.07G048850 Manihot esculenta HOM05D000151 ORTHO05D000074 5.6e-07 60.1 217 21.7
Prupe.6G184600 Prunus persica HOM05D000151 ORTHO05D000074 5.6e-07 60.1 122 28.7
ClCG05G015310 Citrullus lanatus HOM05D000151 ORTHO05D000074 7.3e-07 59.7 207 24.6
Lj2C486T7 Lonicera japonica HOM05D000151 ORTHO05D000074 7.3e-07 59.7 479 22.3
Manes.07G051600 Manihot esculenta HOM05D000151 ORTHO05D000074 7.3e-07 59.7 251 21.5
RcHm_v2.0_Chr5g0020191 Rosa chinensis HOM05D000151 ORTHO05D000074 7.3e-07 59.7 141 29.8
Sopen04g035710 Solanum pennellii HOM05D000151 ORTHO05D000074 9.6e-07 59.3 210 22.9
PGSC0003DMG400009960 Solanum tuberosum HOM05D000151 ORTHO05D000074 9.6e-07 59.3 210 22.9
TWI14G0380 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 9.6e-07 59.3 217 26.3
AL2G18850 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 1.3e-06 58.9 141 28.4
Dinv39566 Davidia involucrata HOM05D000151 ORTHO05D000074 1.3e-06 58.9 218 25.2
Sopen08g002150 Solanum pennellii HOM05D000151 ORTHO05D000074 1.3e-06 58.9 212 24.5
TAR626G0819 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.3e-06 58.9 223 23.3
TAR636G2429 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.3e-06 58.9 210 24.3
Aqoxy5G03594 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 1.6e-06 58.5 215 24.2
CiPaw.08G069900 Carya illinoinensis HOM05D000151 ORTHO05D000074 1.6e-06 58.5 327 22.9
FAN20G1383 Fragaria x ananassa HOM05D000151 ORTHO05D000074 1.6e-06 58.5 290 21.7
Manes.07G048900 Manihot esculenta HOM05D000151 ORTHO05D000074 1.6e-06 58.5 217 21.7
Solyc04g082060.4 Solanum lycopersicum HOM05D000151 ORTHO05D000074 1.6e-06 58.5 204 22.5
TWI38G0386 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 1.6e-06 58.5 211 24.6
Cfa018639 Carpinus fangiana HOM05D000151 ORTHO05D000074 2.1e-06 58.2 211 25.6
Cc08_g14740 Coffea canephora HOM05D000151 ORTHO05D000074 2.1e-06 58.2 274 24.5
Lj2P494T39 Lonicera japonica HOM05D000151 ORTHO05D000074 2.8e-06 57.8 122 29.5
Nitab4.5_0003280g0060 Nicotiana tabacum HOM05D000151 ORTHO05D000074 2.8e-06 57.8 214 24.3
MD13G1223500 Malus domestica HOM05D000151 ORTHO05D000074 3.6e-06 57.4 487 21.6
TWI31G0298 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 4.8e-06 57.0 280 24.3
TAR636G0534 Trochodendron aralioides HOM05D000151 ORTHO05D000074 4.8e-06 57.0 231 25.1
Os10g0520100 Oryza sativa ssp. japonica HOM05D037664 ORTHO05D037072 6.2e-06 56.6 150 36.7
RcHm_v2.0_Chr4g0430571 Rosa chinensis HOM05D014495 ORTHO05D014615 6.2e-06 56.6 233 25.3
PGSC0003DMG400018086 Solanum tuberosum HOM05D000151 ORTHO05D000074 6.2e-06 56.6 474 20.7
TWI14G1335 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 6.2e-06 56.6 217 25.8
Carub.0007s1915 Capsella rubella HOM05D001487 ORTHO05D001365 8.1e-06 56.2 135 31.1
Dinv15578 Davidia involucrata HOM05D000151 ORTHO05D000074 8.1e-06 56.2 324 21.6


User provided reference genes

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