Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0534100 Oryza sativa ssp. japonica HOM05D007245 ORTHO05D009049 5.9e-121 438.0 294 100.0
Zm00001eb113550 Zea mays HOM05D007245 ORTHO05D009049 2.1e-54 216.9 304 56.2
HPP92_006441 Vanilla planifolia HOM05D007245 ORTHO05D009049 2.6e-20 103.6 182 37.9
CSS0018621 Camellia sinensis var. sinensis HOM05D007245 ORTHO05D009049 2.6e-15 87.0 184 36.4
CSS0002235 Camellia sinensis var. sinensis HOM05D007245 ORTHO05D009049 4.4e-15 86.3 184 36.4
Haze_14957 Corylus avellana HOM05D007245 ORTHO05D009049 2.8e-14 83.6 184 35.3
Potri.002G237200 Populus trichocarpa HOM05D007245 ORTHO05D009049 3.7e-14 83.2 185 34.6
TWI32G1326 Tripterygium wilfordii HOM05D007245 ORTHO05D009049 3.7e-14 83.2 183 35.0
Sp6g30110 Schrenkiella parvula HOM05D007245 ORTHO05D009049 4.8e-14 82.8 180 34.4
PGSC0003DMG400030518 Solanum tuberosum HOM05D007245 ORTHO05D009049 4.8e-14 82.8 135 38.5
PGR142G1730 Punica granatum HOM05D007245 ORTHO05D009049 1.1e-13 81.6 136 36.8
Thhalv10014197m.g Eutrema salsugineum HOM05D007245 ORTHO05D009049 1.4e-13 81.3 175 34.9
Sed0008898 Sechium edule HOM05D007245 ORTHO05D009049 1.4e-13 81.3 138 40.6
AL6G24530 Arabidopsis lyrata HOM05D007245 ORTHO05D009049 1.8e-13 80.9 180 33.3
Carub.0006s1208 Capsella rubella HOM05D007245 ORTHO05D009049 1.8e-13 80.9 180 34.4
CARHR199540 Cardamine hirsuta HOM05D007245 ORTHO05D009049 2.4e-13 80.5 180 33.9
Hma1.2p1_0421F.1_g149920 Hydrangea macrophylla HOM05D007245 ORTHO05D009049 2.4e-13 80.5 189 32.8
MD09G1001100 Malus domestica HOM05D007245 ORTHO05D009049 2.4e-13 80.5 138 35.5
TAR629G1424 Trochodendron aralioides HOM05D007245 ORTHO05D009049 2.4e-13 80.5 135 35.6
Oeu050155.1 Olea europaea HOM05D007245 ORTHO05D009049 3.1e-13 80.1 183 32.8
Sopen05g004430 Solanum pennellii HOM05D007245 ORTHO05D009049 3.1e-13 80.1 138 37.7
BcaC04g19069 Brassica carinata HOM05D007245 ORTHO05D009049 4.1e-13 79.7 180 33.9
C09p63210 Brassica napus HOM05D007245 ORTHO05D009049 4.1e-13 79.7 180 33.9
BolC9t59157H Brassica oleracea HOM05D007245 ORTHO05D009049 4.1e-13 79.7 180 33.9
Phvul.001G099200 Phaseolus vulgaris HOM05D007245 ORTHO05D009049 4.1e-13 79.7 135 39.3
Aa31LG11G15470 Aethionema arabicum HOM05D007245 ORTHO05D009049 5.3e-13 79.3 180 33.9
AT5G13890 Arabidopsis thaliana HOM05D007245 ORTHO05D009049 5.3e-13 79.3 180 33.3
CAN.G1489.19 Capsicum annuum HOM05D007245 ORTHO05D009049 5.3e-13 79.3 183 34.4
Peaxi162Scf00950g00032 Petunia axillaris HOM05D007245 ORTHO05D009049 5.3e-13 79.3 135 37.8
Sed0013025 Sechium edule HOM05D007245 ORTHO05D009049 5.3e-13 79.3 138 39.1
BraA10t44512Z Brassica rapa HOM05D007245 ORTHO05D009049 7.0e-13 79.0 180 33.3
ClCG05G012490 Citrullus lanatus HOM05D007245 ORTHO05D009049 7.0e-13 79.0 138 37.7
MELO3C014761.2 Cucumis melo HOM05D007245 ORTHO05D009049 7.0e-13 79.0 138 37.7
CsaV3_3G020030 Cucumis sativus L. HOM05D007245 ORTHO05D009049 7.0e-13 79.0 138 37.7
A10p24470 Brassica napus HOM05D007245 ORTHO05D009049 9.1e-13 78.6 180 33.3
VMungo1383G3535 Vigna mungo HOM05D007245 ORTHO05D009049 9.1e-13 78.6 135 38.5
Ciclev10016068m.g Citrus clementina HOM05D007245 ORTHO05D009049 1.2e-12 78.2 139 36.7
Prupe.7G011800 Prunus persica HOM05D007245 ORTHO05D009049 1.2e-12 78.2 138 36.2
DCAR_000961 Daucus carota HOM05D007245 ORTHO05D009049 1.6e-12 77.8 179 33.5
MD17G1004200 Malus domestica HOM05D007245 ORTHO05D009049 1.6e-12 77.8 138 37.7
vmacro18400 Vaccinium macrocarpon HOM05D007245 ORTHO05D009049 1.6e-12 77.8 138 32.6
BcaC04g24245 Brassica carinata HOM05D007245 ORTHO05D009049 2.0e-12 77.4 180 33.9
THA.LOC104822428 Tarenaya hassleriana HOM05D007245 ORTHO05D009049 2.0e-12 77.4 180 33.3
Duzib187G0347 Durio zibethinus HOM05D007245 ORTHO05D009049 2.6e-12 77.0 183 33.3
Glyma.19G106200 Glycine max HOM05D007245 ORTHO05D009049 3.5e-12 76.6 135 37.8
Nitab4.5_0005095g0010 Nicotiana tabacum HOM05D007245 ORTHO05D009049 3.5e-12 76.6 138 37.0
Duzib147G1224 Durio zibethinus HOM05D007245 ORTHO05D009049 4.5e-12 76.3 135 38.5
HanXRQChr09g0245251 Helianthus annuus HOM05D007245 ORTHO05D009049 4.5e-12 76.3 135 34.8
Lalb_Chr24g0402921 Lupinus albus HOM05D007245 ORTHO05D009049 4.5e-12 76.3 135 36.3
Manes.04G095000 Manihot esculenta HOM05D007245 ORTHO05D009049 4.5e-12 76.3 177 34.5
CiPaw.03G000500 Carya illinoinensis HOM05D007245 ORTHO05D009049 5.9e-12 75.9 135 38.5
Nitab4.5_0005411g0120 Nicotiana tabacum HOM05D007245 ORTHO05D009049 5.9e-12 75.9 180 33.9
Psat3g091920 Pisum sativum HOM05D007245 ORTHO05D009049 5.9e-12 75.9 134 37.3
Actinidia37711 Actinidia chinensis HOM05D007245 ORTHO05D009049 7.7e-12 75.5 138 36.2
TPR.G31664 Trifolium pratense HOM05D007245 ORTHO05D009049 7.7e-12 75.5 134 35.1
CANSAT64G0979 Cannabis sativa HOM05D007245 ORTHO05D009049 1.0e-11 75.1 184 33.2
Cc09_g07550 Coffea canephora HOM05D007245 ORTHO05D009049 1.0e-11 75.1 178 33.1
COL.COLO4_13398 Corchorus olitorius HOM05D005263 ORTHO05D006891 1.3e-11 74.7 135 37.8
Thecc.04G050800 Theobroma cacao HOM05D007245 ORTHO05D009049 1.7e-11 74.3 183 32.8
ATR0582G351 Amborella trichopoda HOM05D007245 ORTHO05D009049 2.2e-11 73.9 138 37.0
Lsat_1_v5_gn_2_60460 Lactuca sativa HOM05D007245 ORTHO05D009049 2.2e-11 73.9 139 36.0
Atru.chr6.2722 Acer truncatum HOM05D007245 ORTHO05D009049 2.9e-11 73.6 135 34.1
Gohir.A11G062100 Gossypium hirsutum HOM05D007245 ORTHO05D009049 2.9e-11 73.6 135 37.8
Manes.11G073800 Manihot esculenta HOM05D007245 ORTHO05D009049 3.8e-11 73.2 183 33.9
Nn3g16217 Nelumbo nucifera HOM05D007245 ORTHO05D009049 5.0e-11 72.8 328 27.7
RcHm_v2.0_Chr2g0176701 Rosa chinensis HOM05D007245 ORTHO05D009049 5.0e-11 72.8 135 36.3
SGA_v2.0_scaffold47G17641 Striga asiatica HOM05D007245 ORTHO05D009049 5.0e-11 72.8 138 34.1
AUR62042868 Chenopodium quinoa HOM05D007245 ORTHO05D009049 6.5e-11 72.4 133 34.6
Lj1g0022763 Lotus japonicus HOM05D007245 ORTHO05D009049 6.5e-11 72.4 135 35.6
Sabra02G0180800 Salix brachista HOM05D007245 ORTHO05D009049 6.5e-11 72.4 280 28.2
Sc03g0005330 Simmondsia chinensis HOM05D007245 ORTHO05D009049 8.5e-11 72.0 138 35.5
PSO017G6414 Papaver somniferum HOM05D007245 ORTHO05D009049 1.1e-10 71.6 138 34.8
SGA_v2.0_scaffold34G13684 Striga asiatica HOM05D007245 ORTHO05D009049 1.1e-10 71.6 138 33.3
Ah.03g136550 Amaranthus hybridus HOM05D001378 ORTHO05D001249 1.5e-10 71.2 133 36.8
Lj7P619T29 Lonicera japonica HOM05D007245 ORTHO05D009049 1.5e-10 71.2 134 35.1
PSO478G0086 Papaver somniferum HOM05D007245 ORTHO05D009049 1.9e-10 70.9 138 34.8
Aqoxy2G01225 Aquilegia oxysepala HOM05D007245 ORTHO05D009049 2.5e-10 70.5 135 35.6
MSTRG.15573 Avicennia marina HOM05D007245 ORTHO05D009049 3.2e-10 70.1 138 34.1
SalBow7G3959 Salvia bowleyana HOM05D007245 ORTHO05D009049 4.2e-10 69.7 135 34.1
Rhsim08G0037800 Rhododendron simsii HOM05D007245 ORTHO05D009049 5.5e-10 69.3 140 31.4
Migut.K01486 Erythranthe guttata HOM05D007245 ORTHO05D009049 9.4e-10 68.6 141 31.9
QL02p068579 Quercus lobata HOM05D007245 ORTHO05D009049 9.4e-10 68.6 134 35.8
Ca_08230_v3 Cicer arietinum L. HOM05D007245 ORTHO05D009049 1.2e-09 68.2 134 35.1
ECA238G1127 Erigeron canadensis HOM05D007245 ORTHO05D009049 1.2e-09 68.2 175 31.4
SMO329G0038 Selaginella moellendorffii HOM05D007245 ORTHO05D009049 1.2e-09 68.2 134 34.3
FvH4_6g31080 Fragaria vesca HOM05D007245 ORTHO05D009049 1.6e-09 67.8 135 33.3
FAN05G2831 Fragaria x ananassa HOM05D007245 ORTHO05D009049 1.6e-09 67.8 135 33.3
Oeu045577.1 Olea europaea HOM05D007245 ORTHO05D009049 2.1e-09 67.4 183 30.1
Dinv33262 Davidia involucrata HOM05D007245 ORTHO05D009049 3.6e-09 66.6 136 33.8
Gohir.D11G065900 Gossypium hirsutum HOM05D007245 ORTHO05D009049 3.6e-09 66.6 91 41.8
Gorai.007G071400 Gossypium raimondii HOM05D007245 ORTHO05D009049 3.6e-09 66.6 91 41.8
RcHm_v2.0_Chr2g0137761 Rosa chinensis HOM05D007245 ORTHO05D009049 4.7e-09 66.2 138 33.3
SHI23073 Sapria himalayana HOM05D000105 ORTHO05D000023 4.7e-09 66.2 85 41.2
Dinv25610 Davidia involucrata HOM05D007245 ORTHO05D009049 8.0e-09 65.5 295 28.1
Cpa.g.sc70.41 Carica papaya HOM05D007245 ORTHO05D009049 3.0e-08 63.5 135 35.6
CDE02G4767 Ceratophyllum demersum HOM05D007245 ORTHO05D009049 3.0e-08 63.5 104 38.5
MBI11_g03703_MAGBIO Magnolia biondii HOM05D007245 ORTHO05D009049 2.6e-07 60.5 313 28.4
Medtr7g084610 Medicago truncatula HOM05D007245 ORTHO05D009049 2.6e-07 60.5 135 31.9
unitig_0.g2407 Utricularia gibba HOM05D007245 ORTHO05D009049 7.5e-07 58.9 138 31.2
AagrBONN_evm.TU.Sc2ySwM_369.440 Anthoceros agrestis HOM05D007245 ORTHO05D009049 6.3e-06 55.8 83 42.2
Pp3c8_3270 Physcomitrium patens HOM05D007245 ORTHO05D009049 8.2e-06 55.5 79 40.5


User provided reference genes

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