Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 0.0e+00 1906.0 979 100.0
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 0.0e+00 1238.8 818 77.1
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 0.0e+00 1194.5 810 76.5
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 2.2e-273 946.0 1009 53.0
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 2.1e-271 939.5 1007 53.2
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 7.9e-271 937.6 1007 52.9
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 5.1e-270 934.9 995 52.8
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 5.1e-270 934.9 1015 53.7
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 6.7e-270 934.5 995 52.3
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 1.5e-269 933.3 982 53.6
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 1.9e-269 932.9 983 53.3
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 7.4e-269 931.0 997 52.9
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 7.4e-269 931.0 984 53.3
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 6.3e-268 927.9 999 53.8
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 1.1e-267 927.2 1009 53.5
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 9.0e-267 924.1 979 53.2
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 9.0e-267 924.1 989 53.1
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 2.0e-266 922.9 1010 51.8
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 4.5e-266 921.8 994 52.1
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 5.9e-266 921.4 991 53.1
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 1.7e-265 919.8 1005 52.4
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 1.7e-265 919.8 994 52.5
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 2.2e-265 919.5 994 52.7
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 2.2e-265 919.5 994 52.7
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 3.8e-265 918.7 991 53.3
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 8.5e-265 917.5 988 52.7
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 8.5e-265 917.5 990 52.4
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 8.5e-265 917.5 989 53.2
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 1.1e-264 917.1 987 53.1
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 9.4e-264 914.1 992 53.5
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 1.2e-263 913.7 999 52.5
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 2.1e-263 912.9 1032 51.5
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 2.1e-263 912.9 994 52.5
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 2.7e-263 912.5 980 52.9
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 4.6e-263 911.8 998 51.7
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 4.6e-263 911.8 990 52.8
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 1.0e-262 910.6 991 52.8
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 1.0e-262 910.6 1011 51.6
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 3.9e-262 908.7 987 51.8
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 6.7e-262 907.9 985 52.7
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 6.7e-262 907.9 992 52.2
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 8.8e-262 907.5 992 51.8
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 1.5e-261 906.7 990 52.2
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 2.0e-261 906.4 997 51.8
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 2.0e-261 906.4 994 51.6
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 3.3e-261 905.6 990 52.3
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 5.7e-261 904.8 990 52.5
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 5.7e-261 904.8 990 52.7
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 9.7e-261 904.0 991 52.9
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 2.8e-260 902.5 1006 51.4
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 2.8e-260 902.5 954 52.6
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 4.8e-260 901.7 993 52.2
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 4.8e-260 901.7 1004 51.8
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 6.3e-260 901.4 996 51.5
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 6.3e-260 901.4 1003 51.6
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 1.8e-259 899.8 1003 52.2
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 1.8e-259 899.8 1002 51.3
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 2.4e-259 899.4 1012 51.8
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 3.1e-259 899.0 990 51.8
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 3.1e-259 899.0 993 50.8
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 5.3e-259 898.3 992 52.3
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 5.9e-258 894.8 1011 51.4
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 5.9e-258 894.8 1005 51.2
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 1.0e-257 894.0 982 52.3
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 2.9e-257 892.5 999 51.9
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 2.9e-257 892.5 994 51.4
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 1.1e-256 890.6 997 51.3
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 1.4e-256 890.2 1009 51.4
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 1.4e-256 890.2 1002 52.1
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 4.2e-256 888.6 992 51.0
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 5.5e-256 888.3 984 51.3
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 5.5e-256 888.3 1014 51.0
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 5.5e-256 888.3 1012 50.8
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 9.4e-256 887.5 991 52.2
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 1.2e-255 887.1 994 50.6
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 1.6e-255 886.7 990 51.7
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 4.7e-255 885.2 980 51.9
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 6.1e-255 884.8 994 51.0
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 1.4e-254 883.6 1034 49.8
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 1.8e-254 883.2 985 52.2
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 3.0e-254 882.5 994 50.8
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 3.9e-254 882.1 1002 50.9
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 2.0e-253 879.8 991 51.9
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 1.7e-252 876.7 999 52.0
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 1.7e-252 876.7 999 52.0
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 3.7e-252 875.5 994 51.0
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 3.7e-252 875.5 991 50.9
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 6.3e-252 874.8 988 50.7
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 1.1e-251 874.0 999 51.9
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 1.4e-251 873.6 1002 51.0
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 4.1e-251 872.1 989 50.7
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 4.1e-251 872.1 979 51.1
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 2.6e-250 869.4 1000 50.4
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 2.6e-250 869.4 953 51.7
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 3.5e-250 869.0 1034 49.4
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 4.5e-250 868.6 986 51.1
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 1.0e-249 867.5 1010 50.1
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 2.9e-249 865.9 974 50.7
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 2.9e-249 865.9 998 51.4
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 5.0e-249 865.1 973 50.7
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 6.5e-249 864.8 998 50.6
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 8.5e-249 864.4 989 50.8
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 1.1e-248 864.0 974 50.5
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 1.5e-248 863.6 1004 51.2
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 8.0e-247 857.8 969 50.6
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 1.8e-246 856.7 999 49.5
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 2.3e-246 856.3 994 50.9
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 3.0e-246 855.9 876 54.2
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 1.3e-244 850.5 999 49.0
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 1.3e-244 850.5 914 52.6
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 3.7e-244 849.0 874 54.0
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 1.1e-243 847.4 990 50.4
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 4.1e-243 845.5 983 49.9
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 7.0e-243 844.7 999 49.9
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 1.6e-242 843.6 1011 50.0
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 4.5e-242 842.0 991 49.6
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 4.5e-242 842.0 995 49.5
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 1.0e-241 840.9 989 49.7
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 3.8e-241 839.0 985 49.9
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 9.4e-240 834.3 1000 49.8
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 2.7e-239 832.8 1001 49.2
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 2.7e-239 832.8 991 49.8
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 1.4e-238 830.5 973 50.1
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 1.7e-236 823.5 912 52.4
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 6.5e-233 811.6 926 50.2
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 7.7e-226 788.1 992 46.8
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 2.1e-223 780.0 962 48.5
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 3.7e-220 769.2 1007 45.8
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 1.5e-213 747.3 795 54.1
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 1.9e-211 740.3 991 46.1
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 2.3e-209 733.4 1000 45.1
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 1.5e-208 730.7 841 49.5
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 1.2e-207 727.6 824 50.6
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 5.6e-192 675.6 1009 42.2
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 2.1e-191 673.7 876 45.3
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 4.3e-184 649.4 977 41.2
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 1.3e-183 647.9 732 52.9
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 3.6e-183 646.4 963 41.4
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.7e-180 637.5 976 40.4
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 3.3e-168 596.7 999 41.2
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 3.8e-164 583.2 707 49.1
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 9.3e-163 578.6 810 46.3
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 6.0e-162 575.9 879 40.3
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 1.5e-149 534.6 976 38.1
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 1.0e-140 505.4 922 35.9
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 3.9e-137 493.4 617 47.2
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 1.4e-134 485.0 626 46.6
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 1.6e-133 481.5 691 46.3
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 1.4e-126 458.4 621 44.9
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 8.8e-121 439.1 616 44.2
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 2.8e-114 417.5 1163 31.6
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.5e-112 411.8 610 43.1
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 5.6e-99 366.7 630 39.5
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 3.4e-72 277.7 264 56.8
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 5.1e-68 263.8 683 32.1
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 1.3e-66 259.2 317 48.9
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 7.6e-64 250.0 226 59.3
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 4.2e-62 244.2 273 52.4
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 4.6e-61 240.7 379 38.5
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 1.6e-53 215.7 512 32.8
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 6.5e-47 193.7 534 31.3
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 7.1e-46 190.3 244 47.1
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 5.1e-44 184.1 936 24.1
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 7.4e-35 153.7 176 44.9
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 1.4e-28 132.9 163 48.5
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 7.4e-19 100.5 192 34.4
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 3.1e-17 95.1 212 30.2
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 5.3e-17 94.4 177 34.5
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 1.2e-16 93.2 158 36.1
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 7.2e-14 84.0 62 69.4
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.7e-10 72.8 140 37.1
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 1.0e-07 63.5 91 39.6
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 1.3e-07 63.2 117 33.3
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 1.7e-07 62.8 85 42.4
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 8.5e-07 60.5 107 32.7


User provided reference genes

Program Settings