Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0473100 Oryza sativa ssp. japonica HOM05D005762 ORTHO05D006823 4.8e-95 351.3 196 100.0
Os06g0171700 Oryza sativa ssp. japonica HOM05D005762 ORTHO05D006823 3.4e-80 302.0 187 88.2
Zm00001eb215170 Zea mays HOM05D005762 ORTHO05D006823 9.8e-80 300.4 186 87.6
Zm00001eb375400 Zea mays HOM05D005762 ORTHO05D006823 9.8e-80 300.4 186 87.6
Aqoxy6G02656 Aquilegia oxysepala HOM05D005762 ORTHO05D006823 4.7e-50 201.8 202 58.4
Lj2g0011355 Lotus japonicus HOM05D005762 ORTHO05D006823 1.1e-49 200.7 186 62.9
Lalb_Chr16g0380631 Lupinus albus HOM05D005762 ORTHO05D006823 1.1e-49 200.7 188 61.7
HPP92_021390 Vanilla planifolia HOM05D005762 ORTHO05D006823 1.1e-49 200.7 192 60.4
Sed0006648 Sechium edule HOM05D005762 ORTHO05D006823 1.8e-49 199.9 186 62.4
TAR625G0504 Trochodendron aralioides HOM05D005762 ORTHO05D006823 1.8e-49 199.9 190 60.5
Dinv42823 Davidia involucrata HOM05D005762 ORTHO05D006823 6.9e-49 198.0 200 60.5
Dinv43277 Davidia involucrata HOM05D005762 ORTHO05D006823 6.9e-49 198.0 200 60.5
Prupe.7G266400 Prunus persica HOM05D005762 ORTHO05D006823 6.9e-49 198.0 190 60.5
Eucgr.C02513 Eucalyptus grandis HOM05D005762 ORTHO05D006823 3.4e-48 195.7 186 61.8
Eucgr.L01546 Eucalyptus grandis HOM05D005762 ORTHO05D006823 3.4e-48 195.7 186 61.8
Hma1.2p1_0222F.1_g093870 Hydrangea macrophylla HOM05D005762 ORTHO05D006823 3.4e-48 195.7 188 62.2
TWI34G1522 Tripterygium wilfordii HOM05D005762 ORTHO05D006823 7.6e-48 194.5 186 60.2
arahy.Tifrunner.gnm1.ann1.0D8FTQ Arachis hypogaea HOM05D005762 ORTHO05D006823 9.9e-48 194.1 185 60.0
ClCG06G012630 Citrullus lanatus HOM05D005762 ORTHO05D006823 1.3e-47 193.7 186 61.3
PSO761G0310 Papaver somniferum HOM05D005762 ORTHO05D006823 1.7e-47 193.4 187 59.9
ATR0767G248 Amborella trichopoda HOM05D005762 ORTHO05D006823 2.9e-47 192.6 190 58.4
Gohir.D12G082500 Gossypium hirsutum HOM05D005762 ORTHO05D006823 3.8e-47 192.2 193 60.1
Rhsim01G0024500 Rhododendron simsii HOM05D005762 ORTHO05D006823 4.9e-47 191.8 190 61.1
Duzib147G0575 Durio zibethinus HOM05D005762 ORTHO05D006823 8.4e-47 191.0 188 60.6
COL.COLO4_27292 Corchorus olitorius HOM05D005762 ORTHO05D006823 1.1e-46 190.7 195 57.9
Lalb_Chr05g0215351 Lupinus albus HOM05D005762 ORTHO05D006823 1.1e-46 190.7 187 59.9
Thecc.01G095900 Theobroma cacao HOM05D005762 ORTHO05D006823 1.1e-46 190.7 193 60.1
arahy.Tifrunner.gnm1.ann1.3SV7H4 Arachis hypogaea HOM05D005762 ORTHO05D006823 1.4e-46 190.3 185 58.9
Gorai.008G090500 Gossypium raimondii HOM05D005762 ORTHO05D006823 1.9e-46 189.9 193 59.1
MBI02_g32399_MAGBIO Magnolia biondii HOM05D005762 ORTHO05D006823 1.9e-46 189.9 192 57.8
Gohir.A12G083500 Gossypium hirsutum HOM05D005762 ORTHO05D006823 2.4e-46 189.5 193 59.1
CDE02G2562 Ceratophyllum demersum HOM05D005762 ORTHO05D006823 7.1e-46 188.0 185 54.6
Nitab4.5_0000032g0060 Nicotiana tabacum HOM05D005762 ORTHO05D006823 7.1e-46 188.0 197 57.9
TWI63G0575 Tripterygium wilfordii HOM05D005762 ORTHO05D006823 9.3e-46 187.6 187 58.3
Manes.14G112900 Manihot esculenta HOM05D005762 ORTHO05D006823 1.2e-45 187.2 183 59.6
Phvul.004G044600 Phaseolus vulgaris HOM05D005762 ORTHO05D006823 1.2e-45 187.2 187 57.8
Nn8g40046 Nelumbo nucifera HOM05D005762 ORTHO05D006823 2.1e-45 186.4 179 62.6
Cc00_g06610 Coffea canephora HOM05D005762 ORTHO05D006823 4.6e-45 185.3 189 57.1
Sed0007428 Sechium edule HOM05D005762 ORTHO05D006823 4.6e-45 185.3 186 58.1
Glyma.19G036900 Glycine max HOM05D005762 ORTHO05D006823 1.0e-44 184.1 186 58.6
GSVIVG01023684001 Vitis vinifera HOM05D005762 ORTHO05D006823 1.7e-44 183.3 198 56.6
Atru.chr7.1163 Acer truncatum HOM05D005762 ORTHO05D006823 3.9e-44 182.2 194 56.2
Sopen04g027270 Solanum pennellii HOM05D005762 ORTHO05D006823 5.1e-44 181.8 187 55.6
PGSC0003DMG400024111 Solanum tuberosum HOM05D005762 ORTHO05D006823 6.6e-44 181.4 187 55.6
MSTRG.25456 Avicennia marina HOM05D005762 ORTHO05D006823 1.9e-43 179.9 190 56.3
Solyc04g071310.3 Solanum lycopersicum HOM05D005762 ORTHO05D006823 2.5e-43 179.5 187 55.1
SGA_v2.0_scaffold118G32537 Striga asiatica HOM05D005762 ORTHO05D006823 4.3e-43 178.7 187 55.1
PSO357G0319 Papaver somniferum HOM05D005762 ORTHO05D006823 7.3e-43 177.9 185 57.3
Peaxi162Scf00765g00313 Petunia axillaris HOM05D005762 ORTHO05D006823 7.3e-43 177.9 187 57.2
PSO170G6399 Papaver somniferum HOM05D005762 ORTHO05D006823 9.6e-43 177.6 185 57.3
HanXRQChr09g0244521 Helianthus annuus HOM05D005762 ORTHO05D006823 1.6e-42 176.8 191 56.0
SalBow7G3475 Salvia bowleyana HOM05D005762 ORTHO05D006823 2.1e-42 176.4 187 55.6
CiPaw.16G107100 Carya illinoinensis HOM05D005762 ORTHO05D006823 2.8e-42 176.0 187 56.7
HanXRQChr03g0066031 Helianthus annuus HOM05D005762 ORTHO05D006823 3.6e-42 175.6 187 54.0
Psat1g057520 Pisum sativum HOM05D005762 ORTHO05D006823 3.6e-42 175.6 186 56.5
MELO3C010201.2 Cucumis melo HOM05D005762 ORTHO05D006823 8.1e-42 174.5 186 57.5
Lsat_1_v5_gn_7_49601 Lactuca sativa HOM05D005762 ORTHO05D006823 1.1e-41 174.1 187 54.5
CAN.G268.6 Capsicum annuum HOM05D005762 ORTHO05D006823 1.8e-41 173.3 188 54.8
Actinidia24370 Actinidia chinensis HOM05D000058 ORTHO05D000077 2.4e-41 172.9 190 56.8
Sabra06G0137900 Salix brachista HOM05D005762 ORTHO05D006823 2.4e-41 172.9 187 55.6
Lj2g0017040 Lotus japonicus HOM05D005762 ORTHO05D006823 3.1e-41 172.6 179 57.5
VMungo1215G2009 Vigna mungo HOM05D005762 ORTHO05D006823 5.3e-41 171.8 185 54.1
CDE06G1965 Ceratophyllum demersum HOM05D005762 ORTHO05D006823 6.9e-41 171.4 185 51.4
vmacro06054 Vaccinium macrocarpon HOM05D005762 ORTHO05D006823 9.0e-41 171.0 189 55.6
Ciclev10009604m.g Citrus clementina HOM05D005762 ORTHO05D006823 1.2e-40 170.6 189 55.0
Migut.C01281 Erythranthe guttata HOM05D005762 ORTHO05D006823 1.5e-40 170.2 188 54.8
Potri.006G180900 Populus trichocarpa HOM05D005762 ORTHO05D006823 2.6e-40 169.5 183 55.2
QL02p094110 Quercus lobata HOM05D005762 ORTHO05D006823 2.6e-40 169.5 187 57.2
DCAR_014801 Daucus carota HOM05D005762 ORTHO05D006823 4.9e-39 165.2 184 52.7
FvH4_1g00560 Fragaria vesca HOM05D005762 ORTHO05D006823 4.9e-39 165.2 186 53.8
CSS0036647 Camellia sinensis var. sinensis HOM05D005762 ORTHO05D006823 1.4e-38 163.7 185 54.6
Haze_19144 Corylus avellana HOM05D005762 ORTHO05D006823 7.1e-38 161.4 174 59.2
DCAR_019992 Daucus carota HOM05D005762 ORTHO05D006823 7.1e-38 161.4 184 49.5
SEGI_01916 Sequoiadendron giganteum HOM05D005762 ORTHO05D006823 7.1e-38 161.4 185 52.4
THA.LOC104814737 Tarenaya hassleriana HOM05D005762 ORTHO05D006823 2.1e-37 159.8 188 51.6
MD15G1148500 Malus domestica HOM05D005762 ORTHO05D006823 3.5e-37 159.1 189 51.9
PGR102G1062 Punica granatum HOM05D005762 ORTHO05D006823 3.5e-37 159.1 186 52.2
FAN26G0640 Fragaria x ananassa HOM05D005762 ORTHO05D006823 1.0e-36 157.5 186 52.2
unitig_0.g206 Utricularia gibba HOM05D005762 ORTHO05D006823 3.9e-36 155.6 185 49.7
TPR.G14135 Trifolium pratense HOM05D005762 ORTHO05D006823 5.1e-36 155.2 184 52.2
unitig_60.g25712 Utricularia gibba HOM05D005762 ORTHO05D006823 8.7e-36 154.5 183 50.3
Mapoly0025s0086 Marchantia polymorpha HOM05D005762 ORTHO05D006823 1.5e-35 153.7 188 48.4
CSS0014952 Camellia sinensis var. sinensis HOM05D005762 ORTHO05D006823 2.5e-35 152.9 184 51.6
BcaB03g12662 Brassica carinata HOM05D005762 ORTHO05D006823 3.3e-35 152.5 184 52.7
Cpa.g.sc199.22 Carica papaya HOM05D005762 ORTHO05D006823 4.3e-35 152.1 172 54.7
Potri.018G103200 Populus trichocarpa HOM05D005762 ORTHO05D006823 4.3e-35 152.1 188 52.7
CANSAT11G0529 Cannabis sativa HOM05D005762 ORTHO05D006823 7.4e-35 151.4 186 50.0
AagrBONN_evm.TU.Sc2ySwM_344.3285 Anthoceros agrestis HOM05D005762 ORTHO05D006823 9.6e-35 151.0 188 47.3
Medtr6g006900 Medicago truncatula HOM05D005762 ORTHO05D006823 9.6e-35 151.0 184 51.6
CARHR238660 Cardamine hirsuta HOM05D005762 ORTHO05D006823 1.6e-34 150.2 190 48.9
Ca_04188_v3 Cicer arietinum L. HOM05D005762 ORTHO05D006823 3.7e-34 149.1 184 51.6
RcHm_v2.0_Chr2g0085191 Rosa chinensis HOM05D005762 ORTHO05D006823 4.8e-34 148.7 186 50.5
Sp7g28690 Schrenkiella parvula HOM05D005762 ORTHO05D006823 1.1e-33 147.5 184 50.5
ECA240G2400 Erigeron canadensis HOM05D006258 ORTHO05D007961 6.9e-33 144.8 174 51.7
Sabra18G0088700 Salix brachista HOM05D000058 ORTHO05D000077 1.2e-32 144.1 171 50.9
SHI02837 Sapria himalayana HOM05D005762 ORTHO05D006823 1.2e-32 144.1 195 47.7
AT4G30820 Arabidopsis thaliana HOM05D005762 ORTHO05D006823 7.6e-32 141.4 184 47.3
SGA_v2.0_scaffold69G23111 Striga asiatica HOM05D005762 ORTHO05D006823 7.6e-32 141.4 208 45.7
Carub.0007s0975 Capsella rubella HOM05D005762 ORTHO05D006823 1.3e-31 140.6 180 47.2
SMO356G0316 Selaginella moellendorffii HOM05D005762 ORTHO05D006823 1.7e-31 140.2 188 46.8
BcaNung02738 Brassica carinata HOM05D005762 ORTHO05D006823 2.2e-31 139.8 197 44.7
Dinv41344 Davidia involucrata HOM05D005762 ORTHO05D006823 3.8e-31 139.0 149 57.7
Pp3c7_18190 Physcomitrium patens HOM05D005762 ORTHO05D006823 3.8e-31 139.0 185 45.9
BraA08t33867Z Brassica rapa HOM05D005762 ORTHO05D006823 1.2e-29 134.0 185 48.1
Rhsim03G0259100 Rhododendron simsii HOM05D005762 ORTHO05D006823 3.9e-28 129.0 148 55.4
Lj9A721G60 Lonicera japonica HOM05D005762 ORTHO05D006823 1.1e-27 127.5 150 54.0
CBR_g45648 Chara braunii HOM05D005762 ORTHO05D006823 1.9e-27 126.7 196 43.9
C03p88490 Brassica napus HOM05D005762 ORTHO05D006823 2.5e-27 126.3 182 46.7
C07p58230 Brassica napus HOM05D000058 ORTHO05D000077 1.1e-25 120.9 180 42.8
BolC7t46281H Brassica oleracea HOM05D000058 ORTHO05D000077 1.1e-25 120.9 180 42.8
Sc18g0003110 Simmondsia chinensis HOM05D005762 ORTHO05D006823 1.1e-25 120.9 147 53.7
BcaNung01558 Brassica carinata HOM05D005762 ORTHO05D006823 1.8e-25 120.2 193 41.5
BcaC01g01136 Brassica carinata HOM05D005762 ORTHO05D006823 9.0e-25 117.9 180 42.2
A08p19060 Brassica napus HOM05D005762 ORTHO05D006823 1.2e-24 117.5 213 41.3
A03p60360 Brassica napus HOM05D005762 ORTHO05D006823 1.3e-23 114.0 180 41.7
THA.LOC104804493 Tarenaya hassleriana HOM05D005762 ORTHO05D006823 7.1e-22 108.2 142 50.0
AUR62025367 Chenopodium quinoa HOM05D005762 ORTHO05D006823 3.0e-20 102.8 76 68.4
Thhalv10026542m.g Eutrema salsugineum HOM05D005762 ORTHO05D006823 5.1e-20 102.1 149 47.7
EL10Ac8g18914 Beta vulgaris HOM05D005762 ORTHO05D006823 8.7e-20 101.3 76 67.1
AL7G21310 Arabidopsis lyrata HOM05D005762 ORTHO05D006823 1.1e-19 100.9 150 46.0
AUR62028383 Chenopodium quinoa HOM05D005762 ORTHO05D006823 1.9e-19 100.1 76 65.8
BraA03t15075Z Brassica rapa HOM05D005762 ORTHO05D006823 2.5e-19 99.8 168 41.1
Oeu026957.1 Olea europaea HOM05D005762 ORTHO05D006823 1.3e-18 97.4 120 47.5
vmacro13053 Vaccinium macrocarpon HOM05D005762 ORTHO05D006823 4.8e-18 95.5 78 65.4
Cfa020788 Carpinus fangiana HOM05D005762 ORTHO05D006823 1.1e-17 94.4 113 55.8
CBR_g3032 Chara braunii HOM05D005762 ORTHO05D006823 1.8e-17 93.6 81 54.3
CsaV3_1G029180 Cucumis sativus L. HOM05D005762 ORTHO05D006823 6.9e-17 91.7 59 74.6
SMO004G0001 Selaginella moellendorffii HOM05D028982 ORTHO05D006823 6.9e-17 91.7 73 58.9
Dinv09756 Davidia involucrata HOM05D000667 ORTHO05D002614 2.9e-15 86.3 97 56.7
BolC3t21157H Brassica oleracea HOM05D005762 ORTHO05D006823 2.5e-14 83.2 163 39.9
vmacro13054 Vaccinium macrocarpon HOM05D006258 ORTHO05D007961 1.2e-13 80.9 88 56.8
Nitab4.5_0008759g0010 Nicotiana tabacum HOM05D005762 ORTHO05D006823 7.9e-13 78.2 87 54.0
Rhsim01G0060600 Rhododendron simsii HOM05D005762 ORTHO05D006823 2.3e-12 76.6 103 47.6
PSO357G0231 Papaver somniferum HOM05D005762 ORTHO05D006823 6.7e-12 75.1 132 41.7
SGA_v2.0_scaffold63G21769 Striga asiatica HOM05D005762 ORTHO05D006823 1.3e-10 70.9 69 53.6
MCO02G015 Micromonas commoda HOM05D005762 ORTHO05D006823 4.8e-10 68.9 198 34.3
Cre16.g672753 Chlamydomonas reinhardtii HOM05D005762 ORTHO05D006823 5.3e-09 65.5 182 32.4
Aa31LG2G19570 Aethionema arabicum HOM05D005762 ORTHO05D006823 7.7e-08 61.6 84 50.0
Oeu064081.1 Olea europaea HOM05D005762 ORTHO05D006823 1.3e-07 60.8 53 62.3


User provided reference genes

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