Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0303050 Oryza sativa ssp. japonica HOM05D003220 ORTHO05D003944 4.5e-97 357.8 171 100.0
Zm00001eb411740 Zea mays HOM05D003220 ORTHO05D003944 7.1e-58 227.6 127 87.4
Os12g0235800 Oryza sativa ssp. japonica HOM05D003220 ORTHO05D003944 3.5e-57 225.3 127 85.8
Sed0014346 Sechium edule HOM05D003220 ORTHO05D003944 5.2e-53 211.5 127 81.1
CDE09G1413 Ceratophyllum demersum HOM05D003220 ORTHO05D003944 1.2e-52 210.3 127 79.5
CsaV3_1G009560 Cucumis sativus L. HOM05D003220 ORTHO05D003944 1.5e-52 209.9 127 81.1
HanXRQChr08g0229301 Helianthus annuus HOM05D003220 ORTHO05D003944 2.0e-52 209.5 127 79.5
HPP92_001246 Vanilla planifolia HOM05D003220 ORTHO05D003944 2.6e-52 209.1 127 81.1
ECA246G3064 Erigeron canadensis HOM05D003220 ORTHO05D003944 3.4e-52 208.8 127 79.5
Atru.chr9.1087 Acer truncatum HOM05D003220 ORTHO05D003944 4.4e-52 208.4 127 79.5
ClCG03G003660 Citrullus lanatus HOM05D003220 ORTHO05D003944 4.4e-52 208.4 127 80.3
ClCG03G003670 Citrullus lanatus HOM05D003220 ORTHO05D003944 4.4e-52 208.4 127 80.3
Lsat_1_v5_gn_5_13561 Lactuca sativa HOM05D003220 ORTHO05D003944 5.8e-52 208.0 127 78.7
HPP92_001262 Vanilla planifolia HOM05D003220 ORTHO05D003944 5.8e-52 208.0 127 80.3
Oeu054655.1 Olea europaea HOM05D003220 ORTHO05D003944 1.3e-51 206.8 127 77.2
QL10p004159 Quercus lobata HOM05D003220 ORTHO05D003944 1.3e-51 206.8 127 78.7
TAR629G1627 Trochodendron aralioides HOM05D003220 ORTHO05D003944 1.3e-51 206.8 127 78.0
MELO3C002352.2 Cucumis melo HOM05D003220 ORTHO05D003944 1.7e-51 206.5 127 79.5
HanXRQChr05g0155091 Helianthus annuus HOM05D003220 ORTHO05D003944 1.7e-51 206.5 127 78.7
RcHm_v2.0_Chr7g0190471 Rosa chinensis HOM05D003220 ORTHO05D003944 1.7e-51 206.5 127 78.0
TAR371G0289 Trochodendron aralioides HOM05D003220 ORTHO05D003944 1.7e-51 206.5 127 79.5
AUR62042443 Chenopodium quinoa HOM05D003220 ORTHO05D003944 2.2e-51 206.1 127 78.7
RcHm_v2.0_Chr7g0190481 Rosa chinensis HOM05D003220 ORTHO05D003944 2.2e-51 206.1 127 77.2
AUR62009263 Chenopodium quinoa HOM05D003220 ORTHO05D003944 2.9e-51 205.7 127 78.7
EL10Ac2g04001 Beta vulgaris HOM05D003220 ORTHO05D003944 4.9e-51 204.9 127 78.0
Cc00_g12840 Coffea canephora HOM05D003220 ORTHO05D003944 4.9e-51 204.9 127 77.2
Hund03392 Selenicereus undatus HOM05D003220 ORTHO05D003944 6.4e-51 204.5 127 78.7
FvH4_5g07910 Fragaria vesca HOM05D003220 ORTHO05D003944 8.3e-51 204.1 127 77.2
FAN18G1033 Fragaria x ananassa HOM05D003220 ORTHO05D003944 8.3e-51 204.1 127 77.2
Glyma.05G046700 Glycine max HOM05D003220 ORTHO05D003944 8.3e-51 204.1 127 78.0
MBI08_g11776_MAGBIO Magnolia biondii HOM05D003220 ORTHO05D003944 8.3e-51 204.1 127 78.0
CiPaw.11G009400 Carya illinoinensis HOM05D003220 ORTHO05D003944 1.1e-50 203.8 127 78.0
ECA247G1256 Erigeron canadensis HOM05D003220 ORTHO05D003944 1.1e-50 203.8 127 78.0
ECA247G3880 Erigeron canadensis HOM05D003220 ORTHO05D003944 1.1e-50 203.8 127 78.0
FAN04G2217 Fragaria x ananassa HOM05D003220 ORTHO05D003944 1.1e-50 203.8 127 77.2
QL10p004209 Quercus lobata HOM05D003220 ORTHO05D003944 1.1e-50 203.8 127 78.0
Hund19502 Selenicereus undatus HOM05D003220 ORTHO05D003944 1.1e-50 203.8 127 78.0
CsaV3_1G009540 Cucumis sativus L. HOM05D003220 ORTHO05D003944 1.4e-50 203.4 127 78.0
Duzib068G0624 Durio zibethinus HOM05D003220 ORTHO05D003944 1.4e-50 203.4 127 77.2
Duzib205G1890 Durio zibethinus HOM05D003220 ORTHO05D003944 1.4e-50 203.4 127 78.7
DCAR_007481 Daucus carota HOM05D003220 ORTHO05D003944 1.9e-50 203.0 127 76.4
Glyma.05G236000 Glycine max HOM05D003220 ORTHO05D003944 1.9e-50 203.0 127 77.2
Gohir.A07G051900 Gossypium hirsutum HOM05D003220 ORTHO05D003944 1.9e-50 203.0 127 78.7
Gohir.D07G056400 Gossypium hirsutum HOM05D003220 ORTHO05D003944 1.9e-50 203.0 127 78.7
Gorai.001G059900 Gossypium raimondii HOM05D003220 ORTHO05D003944 1.9e-50 203.0 127 78.7
Lalb_Chr06g0172311 Lupinus albus HOM05D003220 ORTHO05D003944 1.9e-50 203.0 127 77.2
Lalb_Chr07g0183341 Lupinus albus HOM05D003220 ORTHO05D003944 1.9e-50 203.0 127 77.2
Potri.010G239000 Populus trichocarpa HOM05D003220 ORTHO05D003944 1.9e-50 203.0 127 78.7
SEGI_40301 Sequoiadendron giganteum HOM05D003220 ORTHO05D003944 1.9e-50 203.0 128 78.9
SGA_v2.0_scaffold334G49089 Striga asiatica HOM05D003220 ORTHO05D003944 1.9e-50 203.0 127 76.4
Aqoxy6G02806 Aquilegia oxysepala HOM05D003220 ORTHO05D003944 2.4e-50 202.6 127 74.8
Aqoxy7G03930 Aquilegia oxysepala HOM05D003220 ORTHO05D003944 2.4e-50 202.6 127 74.8
Lalb_Chr13g0297361 Lupinus albus HOM05D003220 ORTHO05D003944 2.4e-50 202.6 127 76.4
Medtr5g042880 Medicago truncatula HOM05D003220 ORTHO05D003944 2.4e-50 202.6 127 77.2
Ah.03g136360 Amaranthus hybridus HOM05D003220 ORTHO05D003944 3.2e-50 202.2 127 77.2
arahy.Tifrunner.gnm1.ann1.HUK63J Arachis hypogaea HOM05D003220 ORTHO05D003944 3.2e-50 202.2 127 76.4
MSTRG.18081 Avicennia marina HOM05D003220 ORTHO05D003944 3.2e-50 202.2 127 77.2
CANSAT64G0212 Cannabis sativa HOM05D003220 ORTHO05D003944 3.2e-50 202.2 127 77.2
FAN08G0954 Fragaria x ananassa HOM05D003220 ORTHO05D003944 3.2e-50 202.2 127 76.4
FAN13G0994 Fragaria x ananassa HOM05D003220 ORTHO05D003944 3.2e-50 202.2 127 76.4
Pp3c1_33150 Physcomitrium patens HOM05D003220 ORTHO05D003944 3.2e-50 202.2 128 78.9
SEGI_19712 Sequoiadendron giganteum HOM05D003220 ORTHO05D003944 3.2e-50 202.2 128 78.1
CSS0036065 Camellia sinensis var. sinensis HOM05D003220 ORTHO05D003944 4.1e-50 201.8 127 77.2
Carub.0007s1622 Capsella rubella HOM05D003220 ORTHO05D003944 4.1e-50 201.8 127 77.2
Glyma.17G128600 Glycine max HOM05D003220 ORTHO05D003944 4.1e-50 201.8 127 77.2
Prupe.5G153100 Prunus persica HOM05D003220 ORTHO05D003944 4.1e-50 201.8 127 74.8
MD06G1144100 Malus domestica HOM05D003220 ORTHO05D003944 5.4e-50 201.4 127 75.6
Thecc.03G126500 Theobroma cacao HOM05D003220 ORTHO05D003944 5.4e-50 201.4 127 76.4
arahy.Tifrunner.gnm1.ann1.VD0ABX Arachis hypogaea HOM05D003220 ORTHO05D003944 7.1e-50 201.1 127 76.4
Glyma.05G046900 Glycine max HOM05D003220 ORTHO05D003944 7.1e-50 201.1 127 76.4
TPR.G30011 Trifolium pratense HOM05D003220 ORTHO05D003944 7.1e-50 201.1 127 76.4
VMungo1215G0590 Vigna mungo HOM05D003220 ORTHO05D003944 7.1e-50 201.1 127 76.4
CSS0002367 Camellia sinensis var. sinensis HOM05D003220 ORTHO05D003944 9.2e-50 200.7 127 75.6
Dinv11156 Davidia involucrata HOM05D003220 ORTHO05D003944 9.2e-50 200.7 127 75.6
Migut.D00060 Erythranthe guttata HOM05D003220 ORTHO05D003944 9.2e-50 200.7 127 75.6
PSO478G5055 Papaver somniferum HOM05D003220 ORTHO05D003944 9.2e-50 200.7 127 76.4
PSO782G5387 Papaver somniferum HOM05D003220 ORTHO05D003944 9.2e-50 200.7 127 76.4
SGA_v2.0_scaffold376G50300 Striga asiatica HOM05D003220 ORTHO05D001798 9.2e-50 200.7 127 76.4
AL7G28350 Arabidopsis lyrata HOM05D003220 ORTHO05D003944 1.2e-49 200.3 127 76.4
AT4G24830 Arabidopsis thaliana HOM05D003220 ORTHO05D003944 1.2e-49 200.3 127 76.4
FAN08G0739 Fragaria x ananassa HOM05D003220 ORTHO05D003944 1.2e-49 200.3 127 74.8
Hma1.2p1_1439F.1_g283510 Hydrangea macrophylla HOM05D003220 ORTHO05D003944 1.2e-49 200.3 127 75.6
MD14G1159300 Malus domestica HOM05D003220 ORTHO05D003944 1.2e-49 200.3 127 74.8
Potri.008G020200 Populus trichocarpa HOM05D003220 ORTHO05D003944 1.2e-49 200.3 127 78.0
Solyc05g012270.3 Solanum lycopersicum HOM05D003220 ORTHO05D003944 1.6e-49 199.9 127 75.6
Sopen05g007100 Solanum pennellii HOM05D003220 ORTHO05D003944 1.6e-49 199.9 127 75.6
Nitab4.5_0000231g0280 Nicotiana tabacum HOM05D003220 ORTHO05D003944 2.1e-49 199.5 127 75.6
Nitab4.5_0001487g0130 Nicotiana tabacum HOM05D003220 ORTHO05D003944 2.1e-49 199.5 127 75.6
Peaxi162Scf00175g00120 Petunia axillaris HOM05D003220 ORTHO05D003944 2.1e-49 199.5 126 75.4
Aa31LG7G11010 Aethionema arabicum HOM05D003220 ORTHO05D003944 2.7e-49 199.1 127 75.6
Dinv04868 Davidia involucrata HOM05D003220 ORTHO05D003944 2.7e-49 199.1 127 74.8
Eucgr.K02738 Eucalyptus grandis HOM05D003220 ORTHO05D003944 2.7e-49 199.1 127 75.6
FvH4_5g30030 Fragaria vesca HOM05D003220 ORTHO05D003944 2.7e-49 199.1 127 74.0
Sed0017817 Sechium edule HOM05D003220 ORTHO05D003944 2.7e-49 199.1 127 74.0
THA.LOC104811595 Tarenaya hassleriana HOM05D003220 ORTHO05D003944 2.7e-49 199.1 127 75.6
Lj9C477T17 Lonicera japonica HOM05D003220 ORTHO05D003944 3.5e-49 198.7 127 74.8
Manes.03G085300 Manihot esculenta HOM05D003220 ORTHO05D003944 3.5e-49 198.7 127 76.4
MSTRG.21708 Avicennia marina HOM05D003220 ORTHO05D003944 4.6e-49 198.4 127 75.6
BcaC06g32854 Brassica carinata HOM05D003220 ORTHO05D003944 4.6e-49 198.4 127 76.4
BcaNung07242 Brassica carinata HOM05D003220 ORTHO05D003944 4.6e-49 198.4 127 76.4
A01p16140 Brassica napus HOM05D003220 ORTHO05D003944 4.6e-49 198.4 127 76.4
A03p55590 Brassica napus HOM05D003220 ORTHO05D003944 4.6e-49 198.4 127 76.4
C01p20130 Brassica napus HOM05D003220 ORTHO05D003944 4.6e-49 198.4 127 76.4
C07p53830 Brassica napus HOM05D003220 ORTHO05D003944 4.6e-49 198.4 127 76.4
BolC1t01942H Brassica oleracea HOM05D003220 ORTHO05D003944 4.6e-49 198.4 127 76.4
BraA01t01550Z Brassica rapa HOM05D003220 ORTHO05D003944 4.6e-49 198.4 127 76.4
BraA03t14626Z Brassica rapa HOM05D003220 ORTHO05D003944 4.6e-49 198.4 127 76.4
MD06G1144000 Malus domestica HOM05D003220 ORTHO05D003944 4.6e-49 198.4 127 74.0
Mapoly0038s0028 Marchantia polymorpha HOM05D003220 ORTHO05D003944 4.6e-49 198.4 128 77.3
Prupe.7G058500 Prunus persica HOM05D003220 ORTHO05D003944 4.6e-49 198.4 127 74.0
PGSC0003DMG400028317 Solanum tuberosum HOM05D003220 ORTHO05D003944 4.6e-49 198.4 127 75.6
Ca_00914_v3 Cicer arietinum L. HOM05D003220 ORTHO05D003944 6.0e-49 198.0 127 76.4
Ca_29978_v3 Cicer arietinum L. HOM05D003220 ORTHO05D003944 6.0e-49 198.0 127 76.4
Thhalv10025000m.g Eutrema salsugineum HOM05D003220 ORTHO05D003944 6.0e-49 198.0 127 75.6
CAN.G1528.7 Capsicum annuum HOM05D003220 ORTHO05D003944 7.8e-49 197.6 127 74.8
Duzib084G0962 Durio zibethinus HOM05D003220 ORTHO05D003944 7.8e-49 197.6 127 76.4
FAN13G1952 Fragaria x ananassa HOM05D003220 ORTHO05D003944 1.0e-48 197.2 127 74.0
Phvul.003G209766 Phaseolus vulgaris HOM05D003220 ORTHO05D003944 1.0e-48 197.2 127 74.8
Phvul.003G209832 Phaseolus vulgaris HOM05D003220 ORTHO05D003944 1.0e-48 197.2 127 74.8
Sp7g22820 Schrenkiella parvula HOM05D003220 ORTHO05D003944 1.0e-48 197.2 127 75.6
COL.COLO4_28080 Corchorus olitorius HOM05D003220 ORTHO05D003944 1.3e-48 196.8 127 74.8
THA.LOC104825013 Tarenaya hassleriana HOM05D003220 ORTHO05D003944 1.3e-48 196.8 127 73.2
Ciclev10019860m.g Citrus clementina HOM05D003220 ORTHO05D003944 1.7e-48 196.4 127 74.8
Medtr4g103680 Medicago truncatula HOM05D003220 ORTHO05D003944 1.7e-48 196.4 127 74.8
TWI63G1463 Tripterygium wilfordii HOM05D003220 ORTHO05D003944 1.7e-48 196.4 127 74.0
ClCG06G017780 Citrullus lanatus HOM05D003220 ORTHO05D003944 2.3e-48 196.1 127 74.0
TWI38G0393 Tripterygium wilfordii HOM05D003220 ORTHO05D003944 2.3e-48 196.1 127 74.0
Haze_24344 Corylus avellana HOM05D003220 ORTHO05D003944 3.0e-48 195.7 127 73.2
MELO3C026229.2 Cucumis melo HOM05D003220 ORTHO05D003944 3.9e-48 195.3 127 73.2
ATR1149G068 Amborella trichopoda HOM05D003220 ORTHO05D003944 5.1e-48 194.9 127 75.6
CANSAT80G2734 Cannabis sativa HOM05D003220 ORTHO05D003944 6.6e-48 194.5 127 73.2
CiPaw.12G040800 Carya illinoinensis HOM05D003220 ORTHO05D003944 6.6e-48 194.5 127 73.2
SGA_v2.0_scaffold198G41113 Striga asiatica HOM05D003220 ORTHO05D003944 6.6e-48 194.5 127 72.4
Migut.N00934 Erythranthe guttata HOM05D003220 ORTHO05D003944 1.1e-47 193.7 127 72.4
Lj4g0002027 Lotus japonicus HOM05D003220 ORTHO05D003944 1.1e-47 193.7 127 72.4
Medtr3g088970 Medicago truncatula HOM05D003220 ORTHO05D003944 1.1e-47 193.7 127 70.1
unitig_750.g28437 Utricularia gibba HOM05D003220 ORTHO05D003944 1.1e-47 193.7 127 72.4
PGR004G0659 Punica granatum HOM05D003220 ORTHO05D003944 1.5e-47 193.4 127 73.2
Rhsim08G0188400 Rhododendron simsii HOM05D003220 ORTHO05D003944 1.5e-47 193.4 127 73.2
SalBow2G0412 Salvia bowleyana HOM05D003220 ORTHO05D003944 1.5e-47 193.4 127 73.2
Lj1g0011796 Lotus japonicus HOM05D003220 ORTHO05D003944 1.9e-47 193.0 127 70.9
Lj1g0021098 Lotus japonicus HOM05D003220 ORTHO05D003944 1.9e-47 193.0 127 70.9
Sed0000451 Sechium edule HOM05D003220 ORTHO05D003944 1.9e-47 193.0 127 72.4
CsaV3_1G000670 Cucumis sativus L. HOM05D003220 ORTHO05D003944 2.5e-47 192.6 127 72.4
Lj1g0011038 Lotus japonicus HOM05D003220 ORTHO05D003944 3.3e-47 192.2 127 70.9
Lj2g0018966 Lotus japonicus HOM05D003220 ORTHO05D003944 3.3e-47 192.2 127 72.4
SMO356G0518 Selaginella moellendorffii HOM05D003220 ORTHO05D003944 3.3e-47 192.2 127 74.0
AagrBONN_evm.TU.Sc2ySwM_228.4817 Anthoceros agrestis HOM05D003220 ORTHO05D003944 5.6e-47 191.4 151 64.9
FAN18G3924 Fragaria x ananassa HOM05D003220 ORTHO05D003944 5.6e-47 191.4 127 72.4
TPR.G26144 Trifolium pratense HOM05D003220 ORTHO05D003944 5.6e-47 191.4 127 70.1
Lj1g0022826 Lotus japonicus HOM05D003220 ORTHO05D003944 2.1e-46 189.5 127 70.1
Sc10g0010420 Simmondsia chinensis HOM05D003220 ORTHO05D003944 2.8e-46 189.1 127 70.9
vmacro18315 Vaccinium macrocarpon HOM05D003220 ORTHO05D003944 4.7e-46 188.3 127 70.1
Haze_07237 Corylus avellana HOM05D003220 ORTHO05D003944 8.1e-46 187.6 127 68.5
CARHR232250 Cardamine hirsuta HOM05D003220 ORTHO05D003944 1.4e-45 186.8 127 72.4
vmacro05131 Vaccinium macrocarpon HOM05D003220 ORTHO05D003944 1.4e-45 186.8 127 70.1
Sc10g0008710 Simmondsia chinensis HOM05D003220 ORTHO05D003944 2.4e-45 186.0 127 70.9
Cfa018844 Carpinus fangiana HOM05D003220 ORTHO05D003944 3.1e-45 185.7 127 68.5
Psat5g139800 Pisum sativum HOM05D003220 ORTHO05D003944 3.4e-44 182.2 127 66.1
CBR_g61477 Chara braunii HOM05D003220 ORTHO05D003944 1.9e-42 176.4 128 68.0
Medtr3g088940 Medicago truncatula HOM05D003220 ORTHO05D003944 3.1e-37 159.1 109 67.0
Glyma.08G043400 Glycine max HOM05D003220 ORTHO05D003944 7.6e-36 154.5 95 78.9
Pp3c12_4480 Physcomitrium patens HOM05D003220 ORTHO05D003944 3.5e-33 145.6 128 60.9
Cre09.g416050 Chlamydomonas reinhardtii HOM05D003220 ORTHO05D003944 1.9e-31 139.8 128 53.9
Lj6g0003196 Lotus japonicus HOM05D003220 ORTHO05D003944 7.3e-31 137.9 99 66.7
Actinidia25590 Actinidia chinensis HOM05D003220 ORTHO05D003944 1.1e-29 134.0 127 55.9
SMO356G0112 Selaginella moellendorffii HOM05D003220 ORTHO05D003944 1.7e-27 126.7 89 70.8
PRCOL_00001450 Prasinoderma coloniale HOM05D003220 ORTHO05D003944 8.4e-27 124.4 127 49.6
vmacro19215 Vaccinium macrocarpon HOM05D002332 ORTHO05D002509 1.0e-24 117.5 80 68.8
FvH4_5g06920 Fragaria vesca HOM05D003220 ORTHO05D003944 4.3e-23 112.1 103 54.4
GSVIVG01008510001 Vitis vinifera HOM05D003220 ORTHO05D003944 1.0e-16 90.9 57 78.9
Cfa022737 Carpinus fangiana HOM05D003220 ORTHO05D003944 3.0e-16 89.4 130 36.2
Psat0s3176g0120 Pisum sativum HOM05D003220 ORTHO05D003944 1.9e-15 86.7 128 46.9
BcaC07g38166 Brassica carinata HOM05D003220 ORTHO05D003944 9.0e-13 77.8 55 72.7


User provided reference genes

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