Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0270000 Oryza sativa ssp. japonica HOM05D001680 ORTHO05D001596 5.9e-138 494.2 251 100.0
Os11g0275800 Oryza sativa ssp. japonica HOM05D001680 ORTHO05D001596 8.0e-26 121.7 249 37.8
Os11g0274700 Oryza sativa ssp. japonica HOM05D000013 ORTHO05D294294 2.0e-24 117.1 250 37.6
Os11g0269900 Oryza sativa ssp. japonica HOM05D001680 ORTHO05D001596 1.8e-22 110.5 242 38.0
ClCG05G004430 Citrullus lanatus HOM05D001680 ORTHO05D001596 3.0e-12 76.6 231 30.3
CsaV3_3G012330 Cucumis sativus L. HOM05D001680 ORTHO05D001596 6.6e-12 75.5 231 29.9
Eucgr.H00183 Eucalyptus grandis HOM05D001680 ORTHO05D001596 8.6e-12 75.1 239 31.8
Sopen06g018760 Solanum pennellii HOM05D001680 ORTHO05D001596 3.3e-11 73.2 239 28.9
PGSC0003DMG400016285 Solanum tuberosum HOM05D001680 ORTHO05D001596 3.3e-11 73.2 239 29.3
MELO3C006442.2 Cucumis melo HOM05D001680 ORTHO05D001596 5.6e-11 72.4 231 29.4
Solyc06g053670.1 Solanum lycopersicum HOM05D001680 ORTHO05D001596 5.6e-11 72.4 230 28.7
SalBow3G2541 Salvia bowleyana HOM05D001680 ORTHO05D001596 7.3e-11 72.0 257 31.1
Actinidia04463 Actinidia chinensis HOM05D001680 ORTHO05D001596 9.5e-11 71.6 242 30.6
Sc06g0007420 Simmondsia chinensis HOM05D001680 ORTHO05D001596 9.5e-11 71.6 227 28.2
MELO3C006444.2 Cucumis melo HOM05D001680 ORTHO05D001596 1.2e-10 71.2 230 30.0
Sc09g0007020 Simmondsia chinensis HOM05D001680 ORTHO05D001596 2.8e-10 70.1 233 27.0
MELO3C006443.2 Cucumis melo HOM05D001680 ORTHO05D001596 4.7e-10 69.3 227 29.5
CsaV3_3G012350 Cucumis sativus L. HOM05D001680 ORTHO05D001596 4.7e-10 69.3 230 30.4
ECA240G2121 Erigeron canadensis HOM05D001680 ORTHO05D001596 1.0e-09 68.2 237 28.3
Aa31LG2G2510 Aethionema arabicum HOM05D001680 ORTHO05D001596 1.4e-09 67.8 229 27.9
Cpa.g.sc1.378 Carica papaya HOM05D001680 ORTHO05D001596 1.4e-09 67.8 235 28.5
Dinv44657 Davidia involucrata HOM05D001680 ORTHO05D001596 1.4e-09 67.8 241 27.4
Nitab4.5_0005167g0050 Nicotiana tabacum HOM05D001680 ORTHO05D001596 1.4e-09 67.8 228 28.1
TWI73G0979 Tripterygium wilfordii HOM05D001680 ORTHO05D001596 1.4e-09 67.8 242 26.9
PGR031G0448 Punica granatum HOM05D001680 ORTHO05D001596 1.8e-09 67.4 253 31.6
PGR044G0512 Punica granatum HOM05D001680 ORTHO05D001596 1.8e-09 67.4 232 29.3
CAN.G374.6 Capsicum annuum HOM05D001680 ORTHO05D001596 2.3e-09 67.0 249 27.7
Os01g0205600 Oryza sativa ssp. japonica HOM05D001680 ORTHO05D001596 2.3e-09 67.0 255 29.4
Ca_11963_v3 Cicer arietinum L. HOM05D001680 ORTHO05D001596 3.1e-09 66.6 178 31.5
Sabra08G0125400 Salix brachista HOM05D001680 ORTHO05D001596 3.1e-09 66.6 241 29.9
CSS0036488 Camellia sinensis var. sinensis HOM05D001680 ORTHO05D001596 4.0e-09 66.2 231 29.9
Nitab4.5_0012494g0010 Nicotiana tabacum HOM05D001680 ORTHO05D001596 4.0e-09 66.2 228 28.1
AT1G65520 Arabidopsis thaliana HOM05D001680 ORTHO05D001596 5.2e-09 65.9 231 30.7
A02p13250 Brassica napus HOM05D001680 ORTHO05D001596 5.2e-09 65.9 234 29.5
BraA02t06382Z Brassica rapa HOM05D001680 ORTHO05D001596 5.2e-09 65.9 234 29.5
CsaV3_3G012340 Cucumis sativus L. HOM05D001680 ORTHO05D001596 5.2e-09 65.9 227 28.2
Lj3A796T22 Lonicera japonica HOM05D001680 ORTHO05D001596 5.2e-09 65.9 231 28.1
Sed0026719 Sechium edule HOM05D001680 ORTHO05D001596 5.2e-09 65.9 230 29.6
BcaC03g14708 Brassica carinata HOM05D001680 ORTHO05D001596 6.8e-09 65.5 234 29.1
C02p21430 Brassica napus HOM05D001680 ORTHO05D001596 6.8e-09 65.5 234 29.1
BolC2t08281H Brassica oleracea HOM05D001680 ORTHO05D001596 6.8e-09 65.5 234 29.1
Lj1g0006371 Lotus japonicus HOM05D001680 ORTHO05D001596 6.8e-09 65.5 240 26.7
A09p04280 Brassica napus HOM05D001680 ORTHO05D001596 8.9e-09 65.1 230 29.1
Lsat_1_v5_gn_5_72480 Lactuca sativa HOM05D001680 ORTHO05D001596 8.9e-09 65.1 241 25.7
Phvul.007G272300 Phaseolus vulgaris HOM05D001680 ORTHO05D001596 8.9e-09 65.1 231 27.7
PGR044G0149 Punica granatum HOM05D001680 ORTHO05D001596 8.9e-09 65.1 232 29.7
AL2G22470 Arabidopsis lyrata HOM05D001680 ORTHO05D001596 1.2e-08 64.7 231 29.9
BraA09t36065Z Brassica rapa HOM05D001680 ORTHO05D001596 1.2e-08 64.7 230 29.1
Potri.010G073700 Populus trichocarpa HOM05D001680 ORTHO05D001596 1.2e-08 64.7 248 29.8
TWI09G0873 Tripterygium wilfordii HOM05D001680 ORTHO05D001596 1.2e-08 64.7 236 26.7
Carub.0002s1134 Capsella rubella HOM05D001680 ORTHO05D001596 1.5e-08 64.3 229 30.1
SalBow5G3329 Salvia bowleyana HOM05D001680 ORTHO05D001596 1.5e-08 64.3 235 25.1
C09p04530 Brassica napus HOM05D001680 ORTHO05D001596 2.6e-08 63.5 230 29.6
Lj6g0014672 Lotus japonicus HOM05D001680 ORTHO05D001596 2.6e-08 63.5 235 28.5
Thecc.10G047000 Theobroma cacao HOM05D001680 ORTHO05D001596 2.6e-08 63.5 226 27.4
AUR62040960 Chenopodium quinoa HOM05D001680 ORTHO05D001596 3.4e-08 63.2 232 26.7
Hma1.2p1_0310F.1_g120700 Hydrangea macrophylla HOM05D001680 ORTHO05D001596 3.4e-08 63.2 230 27.8
Psat3g180720 Pisum sativum HOM05D001680 ORTHO05D001596 3.4e-08 63.2 222 27.5
SalBow5G2367 Salvia bowleyana HOM05D001680 ORTHO05D001596 3.4e-08 63.2 235 24.7
SGA_v2.0_scaffold11G05788 Striga asiatica HOM05D001680 ORTHO05D001596 3.4e-08 63.2 242 26.9
TAR486G0003 Trochodendron aralioides HOM05D001680 ORTHO05D001596 3.4e-08 63.2 237 27.4
BolC9t53382H Brassica oleracea HOM05D001680 ORTHO05D001596 4.4e-08 62.8 230 29.1
BcaB05g24121 Brassica carinata HOM05D001680 ORTHO05D001596 5.8e-08 62.4 230 27.8
Lj6g0011787 Lotus japonicus HOM05D001680 ORTHO05D001596 5.8e-08 62.4 232 28.4
PGR044G2295 Punica granatum HOM05D001680 ORTHO05D001596 5.8e-08 62.4 227 27.3
Rhsim02G0035300 Rhododendron simsii HOM05D001680 ORTHO05D001596 5.8e-08 62.4 234 27.8
Potri.008G164900 Populus trichocarpa HOM05D001680 ORTHO05D001596 7.5e-08 62.0 236 28.0
CARHR057230 Cardamine hirsuta HOM05D001680 ORTHO05D001596 9.8e-08 61.6 229 28.8
COL.COLO4_14965 Corchorus olitorius HOM05D001680 ORTHO05D001596 9.8e-08 61.6 226 26.5
Nn1g04492 Nelumbo nucifera HOM05D001680 ORTHO05D001596 9.8e-08 61.6 233 27.0
Nitab4.5_0000302g0170 Nicotiana tabacum HOM05D001680 ORTHO05D001596 9.8e-08 61.6 242 28.1
Sp5g20440 Schrenkiella parvula HOM05D001680 ORTHO05D001596 9.8e-08 61.6 229 29.3
TAR486G0005 Trochodendron aralioides HOM05D001680 ORTHO05D001596 9.8e-08 61.6 239 28.9
Glyma.10G007900 Glycine max HOM05D001680 ORTHO05D001596 1.3e-07 61.2 237 29.5
Psat3g180640 Pisum sativum HOM05D001680 ORTHO05D001596 1.3e-07 61.2 231 26.0
SalBow5G5442 Salvia bowleyana HOM05D001680 ORTHO05D001596 1.3e-07 61.2 229 25.3
Sc13g0005160 Simmondsia chinensis HOM05D001680 ORTHO05D001596 1.3e-07 61.2 233 28.8
Thecc.04G250500 Theobroma cacao HOM05D001680 ORTHO05D001596 1.3e-07 61.2 231 32.5
BcaB04g19544 Brassica carinata HOM05D001680 ORTHO05D001596 1.7e-07 60.8 230 28.7
Gorai.002G025100 Gossypium raimondii HOM05D001680 ORTHO05D001596 1.7e-07 60.8 223 29.6
BraA08t33105Z Brassica rapa HOM05D001680 ORTHO05D001596 2.2e-07 60.5 234 29.5
Eucgr.J00043 Eucalyptus grandis HOM05D001680 ORTHO05D001596 2.2e-07 60.5 240 28.3
Thhalv10027007m.g Eutrema salsugineum HOM05D001680 ORTHO05D001596 2.2e-07 60.5 239 28.5
Phvul.008G013200 Phaseolus vulgaris HOM05D001680 ORTHO05D001596 2.2e-07 60.5 236 28.0
VMungo0720G0408 Vigna mungo HOM05D001680 ORTHO05D001596 2.2e-07 60.5 226 27.0
CiPaw.02G114600 Carya illinoinensis HOM05D001680 ORTHO05D001596 2.9e-07 60.1 245 26.5
Ciclev10005736m.g Citrus clementina HOM05D001680 ORTHO05D001596 2.9e-07 60.1 239 28.9
Medtr7g024300 Medicago truncatula HOM05D001680 ORTHO05D001596 2.9e-07 60.1 238 27.7
TAR624G0040 Trochodendron aralioides HOM05D001680 ORTHO05D001596 2.9e-07 60.1 236 26.3
VMungo1383G2118 Vigna mungo HOM05D001680 ORTHO05D001596 2.9e-07 60.1 235 28.5
BcaB04g19539 Brassica carinata HOM05D001680 ORTHO05D001596 3.7e-07 59.7 229 26.6
BcaC07g37816 Brassica carinata HOM05D001680 ORTHO05D001596 3.7e-07 59.7 233 27.9
Thhalv10019107m.g Eutrema salsugineum HOM05D001680 ORTHO05D001596 3.7e-07 59.7 231 26.0
MBI06_g15769_MAGBIO Magnolia biondii HOM05D001680 ORTHO05D001596 3.7e-07 59.7 240 27.9
A08p11110 Brassica napus HOM05D001680 ORTHO05D001596 4.9e-07 59.3 234 29.1
Cpa.g.sc44.86 Carica papaya HOM05D001680 ORTHO05D001596 4.9e-07 59.3 229 28.4
CiPaw.15G086600 Carya illinoinensis HOM05D001680 ORTHO05D001596 4.9e-07 59.3 226 27.0
Cc03_g05150 Coffea canephora HOM05D001680 ORTHO05D001596 4.9e-07 59.3 233 28.8
Duzib114G0501 Durio zibethinus HOM05D001680 ORTHO05D001596 4.9e-07 59.3 230 27.0
Lj1P934T39 Lonicera japonica HOM05D001680 ORTHO05D001596 4.9e-07 59.3 233 26.2
Peaxi162Scf00069g01510 Petunia axillaris HOM05D001680 ORTHO05D001596 4.9e-07 59.3 228 27.2
HPP92_005485 Vanilla planifolia HOM05D001680 ORTHO05D001596 4.9e-07 59.3 232 25.4
Zm00001eb293360 Zea mays HOM05D001680 ORTHO05D001596 4.9e-07 59.3 231 27.7
Atru.chr4.2135 Acer truncatum HOM05D001680 ORTHO05D001596 6.4e-07 58.9 228 27.6
BcaC07g37817 Brassica carinata HOM05D001680 ORTHO05D001596 6.4e-07 58.9 234 28.6
BolC8t48205H Brassica oleracea HOM05D001680 ORTHO05D001596 6.4e-07 58.9 234 28.6
Cc00_g34910 Coffea canephora HOM05D001680 ORTHO05D001596 6.4e-07 58.9 233 26.6
Migut.N00249 Erythranthe guttata HOM05D001680 ORTHO05D001596 6.4e-07 58.9 246 28.0
Gohir.D01G022800 Gossypium hirsutum HOM05D001680 ORTHO05D001596 6.4e-07 58.9 242 29.3
Phvul.006G189000 Phaseolus vulgaris HOM05D001680 ORTHO05D001596 6.4e-07 58.9 228 26.3
arahy.Tifrunner.gnm1.ann1.MF24RD Arachis hypogaea HOM05D001680 ORTHO05D001596 8.3e-07 58.5 241 26.6
Carub.0007s2779 Capsella rubella HOM05D001680 ORTHO05D001596 8.3e-07 58.5 237 29.5
PSO210G1903 Papaver somniferum HOM05D001680 ORTHO05D001596 8.3e-07 58.5 167 29.9
QL04p022006 Quercus lobata HOM05D001680 ORTHO05D001596 8.3e-07 58.5 175 28.6
Sed0024318 Sechium edule HOM05D001680 ORTHO05D001596 8.3e-07 58.5 236 26.3
THA.LOC104805984 Tarenaya hassleriana HOM05D001680 ORTHO05D001596 8.3e-07 58.5 230 27.0
Ah.10g033490 Amaranthus hybridus HOM05D001680 ORTHO05D001596 1.1e-06 58.2 233 26.2
Aqoxy7G01670 Aquilegia oxysepala HOM05D001680 ORTHO05D001596 1.1e-06 58.2 229 24.5
BcaB04g18220 Brassica carinata HOM05D001680 ORTHO05D001596 1.1e-06 58.2 234 28.6
Haze_11336 Corylus avellana HOM05D001680 ORTHO05D001596 1.1e-06 58.2 236 26.3
Dinv31436 Davidia involucrata HOM05D001680 ORTHO05D001596 1.1e-06 58.2 232 25.0
Eucgr.J00044 Eucalyptus grandis HOM05D001680 ORTHO05D001596 1.1e-06 58.2 221 27.1
Manes.07G113600 Manihot esculenta HOM05D001680 ORTHO05D001596 1.1e-06 58.2 158 27.2
Rhsim09G0164400 Rhododendron simsii HOM05D001680 ORTHO05D001596 1.1e-06 58.2 236 27.1
SalBow5G1653 Salvia bowleyana HOM05D001680 ORTHO05D001596 1.1e-06 58.2 226 25.2
VMungo0540G1900 Vigna mungo HOM05D001680 ORTHO05D001596 1.1e-06 58.2 225 26.2
AL7G41710 Arabidopsis lyrata HOM05D001680 ORTHO05D001596 1.4e-06 57.8 237 28.7
arahy.Tifrunner.gnm1.ann1.26JD8R Arachis hypogaea HOM05D001680 ORTHO05D001596 1.4e-06 57.8 241 26.1
arahy.Tifrunner.gnm1.ann1.5EW6J1 Arachis hypogaea HOM05D001446 ORTHO05D001360 1.4e-06 57.8 222 27.9
arahy.Tifrunner.gnm1.ann1.QI8P42 Arachis hypogaea HOM05D001446 ORTHO05D001360 1.4e-06 57.8 222 27.9
CSS0039787 Camellia sinensis var. sinensis HOM05D001680 ORTHO05D001596 1.4e-06 57.8 241 26.6
AUR62038370 Chenopodium quinoa HOM05D001680 ORTHO05D001596 1.4e-06 57.8 236 25.4
Glyma.13G243400 Glycine max HOM05D001680 ORTHO05D001596 1.4e-06 57.8 227 27.3
Glyma.18G288900 Glycine max HOM05D001680 ORTHO05D001596 1.4e-06 57.8 221 27.1
SGA_v2.0_scaffold79G25659 Striga asiatica HOM05D001680 ORTHO05D001596 1.4e-06 57.8 249 28.9
TPR.G15482 Trifolium pratense HOM05D001680 ORTHO05D001596 1.4e-06 57.8 231 26.4
AT4G14430 Arabidopsis thaliana HOM05D001680 ORTHO05D001596 1.9e-06 57.4 237 29.1
Gorai.002G025200 Gossypium raimondii HOM05D001680 ORTHO05D001596 1.9e-06 57.4 242 28.5
HanXRQChr03g0092231 Helianthus annuus HOM05D001680 ORTHO05D001596 1.9e-06 57.4 239 27.2
Nn1g04489 Nelumbo nucifera HOM05D001680 ORTHO05D001596 1.9e-06 57.4 229 25.3
PSO541G0221 Papaver somniferum HOM05D001680 ORTHO05D001596 1.9e-06 57.4 158 31.0
THA.LOC104808610 Tarenaya hassleriana HOM05D001680 ORTHO05D001596 1.9e-06 57.4 231 29.0
Sp7g12500 Schrenkiella parvula HOM05D001680 ORTHO05D001596 2.4e-06 57.0 240 28.8
THA.LOC104823834 Tarenaya hassleriana HOM05D001680 ORTHO05D001596 2.4e-06 57.0 234 26.9
CARHR220640 Cardamine hirsuta HOM05D001680 ORTHO05D001596 3.2e-06 56.6 236 28.0
Cc06_g19450 Coffea canephora HOM05D001680 ORTHO05D001596 3.2e-06 56.6 236 25.8
COL.COLO4_14966 Corchorus olitorius HOM05D001680 ORTHO05D001596 3.2e-06 56.6 238 27.3
Gohir.D01G022600 Gossypium hirsutum HOM05D001680 ORTHO05D001596 3.2e-06 56.6 232 29.7
Manes.15G038400 Manihot esculenta HOM05D001680 ORTHO05D001596 3.2e-06 56.6 227 26.9
QL06p016681 Quercus lobata HOM05D001680 ORTHO05D001596 3.2e-06 56.6 237 27.4
ATR0127G015 Amborella trichopoda HOM05D001680 ORTHO05D001596 4.1e-06 56.2 230 25.2
BcaC04g23801 Brassica carinata HOM05D001680 ORTHO05D001596 4.1e-06 56.2 157 29.3
CSS0016983 Camellia sinensis var. sinensis HOM05D001680 ORTHO05D001596 4.1e-06 56.2 168 29.2
CiPaw.15G086700 Carya illinoinensis HOM05D001680 ORTHO05D001596 4.1e-06 56.2 226 26.5
PSO761G0648 Papaver somniferum HOM05D001680 ORTHO05D001596 4.1e-06 56.2 141 32.6
Sabra08G0037900 Salix brachista HOM05D001680 ORTHO05D001596 4.1e-06 56.2 221 27.1
Sed0008562 Sechium edule HOM05D001680 ORTHO05D001596 4.1e-06 56.2 248 29.4
Zm00001eb338180 Zea mays HOM05D001680 ORTHO05D001596 4.1e-06 56.2 171 29.8
CANSAT56G2235 Cannabis sativa HOM05D001680 ORTHO05D001596 5.4e-06 55.8 227 26.4
AUR62026303 Chenopodium quinoa HOM05D001680 ORTHO05D001596 5.4e-06 55.8 230 25.2
Ciclev10006789m.g Citrus clementina HOM05D001680 ORTHO05D001596 5.4e-06 55.8 239 28.0
Gohir.A01G024700 Gossypium hirsutum HOM05D001680 ORTHO05D001596 5.4e-06 55.8 242 29.3
Gohir.A05G301200 Gossypium hirsutum HOM05D001680 ORTHO05D001596 5.4e-06 55.8 230 26.5
Hma1.2p1_0067F.1_g037080 Hydrangea macrophylla HOM05D001680 ORTHO05D001596 5.4e-06 55.8 221 27.1
Lsat_1_v5_gn_3_122260 Lactuca sativa HOM05D001680 ORTHO05D001596 5.4e-06 55.8 251 26.7
Peaxi162Scf00618g00748 Petunia axillaris HOM05D001680 ORTHO05D004341 5.4e-06 55.8 240 25.4
SalBow5G3246 Salvia bowleyana HOM05D001680 ORTHO05D001596 5.4e-06 55.8 226 25.7
SHI00688 Sapria himalayana HOM05D001680 ORTHO05D001596 5.4e-06 55.8 228 27.2
Cc02_g08140 Coffea canephora HOM05D001680 ORTHO05D001596 7.0e-06 55.5 157 30.6
CsaV3_5G026420 Cucumis sativus L. HOM05D001680 ORTHO05D001596 7.0e-06 55.5 226 24.8
Os05g0529200 Oryza sativa ssp. japonica HOM05D001680 ORTHO05D001596 7.0e-06 55.5 231 24.7
PSO210G1838 Papaver somniferum HOM05D001680 ORTHO05D001596 7.0e-06 55.5 158 29.7
GSVIVG01016583001 Vitis vinifera HOM05D001680 ORTHO05D001596 7.0e-06 55.5 232 24.6
Cfa008349 Carpinus fangiana HOM05D001680 ORTHO05D001596 9.2e-06 55.1 236 25.8
AUR62026498 Chenopodium quinoa HOM05D001680 ORTHO05D001596 9.2e-06 55.1 230 24.3
Solyc01g091520.3 Solanum lycopersicum HOM05D001680 ORTHO05D001596 9.2e-06 55.1 226 25.2
PGSC0003DMG400012768 Solanum tuberosum HOM05D001680 ORTHO05D001596 9.2e-06 55.1 226 25.2
TPR.G29043 Trifolium pratense HOM05D001680 ORTHO05D001596 9.2e-06 55.1 230 27.4


User provided reference genes

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