Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 0.0e+00 1724.9 901 100.0
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 0.0e+00 1092.8 876 65.4
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 2.5e-247 859.4 851 51.6
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 7.9e-233 811.2 857 49.5
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 1.3e-230 803.9 901 47.2
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 1.2e-228 797.3 837 50.8
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 1.5e-228 797.0 859 48.2
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 3.2e-226 789.3 851 48.9
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 1.6e-225 786.9 853 47.8
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 1.9e-223 780.0 850 49.1
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 1.6e-222 776.9 853 47.7
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 2.8e-222 776.2 861 47.9
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 3.1e-221 772.7 862 46.9
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 4.0e-221 772.3 836 49.0
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 6.9e-221 771.5 851 47.4
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 2.0e-220 770.0 864 46.5
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 3.8e-219 765.8 851 47.4
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 2.5e-218 763.1 856 46.6
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 3.5e-217 759.2 864 46.1
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 3.5e-217 759.2 853 47.0
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 5.1e-216 755.4 777 50.1
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 8.7e-216 754.6 855 46.1
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 1.1e-215 754.2 855 46.9
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 1.5e-215 753.8 853 47.0
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 7.4e-215 751.5 855 46.3
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 2.8e-214 749.6 862 46.2
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 6.3e-214 748.4 855 46.2
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 5.3e-213 745.3 853 46.7
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 8.5e-211 738.0 852 45.7
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 1.1e-210 737.6 853 46.2
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.4e-210 737.3 852 45.7
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 5.5e-210 735.3 857 48.5
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 4.6e-209 732.3 854 46.8
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 6.1e-209 731.9 854 46.7
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 2.3e-208 729.9 856 45.7
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 2.3e-208 729.9 878 44.8
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.0e-208 729.6 852 45.3
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 3.0e-208 729.6 842 46.4
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 6.7e-208 728.4 859 45.6
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 1.5e-207 727.2 854 46.3
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 9.7e-207 724.5 850 46.0
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 6.3e-206 721.8 860 46.2
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.2e-204 717.6 852 44.6
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 5.0e-203 712.2 852 45.1
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 2.1e-201 706.8 851 44.7
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 3.6e-201 706.1 854 46.1
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 1.4e-200 704.1 880 44.7
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 1.4e-200 704.1 852 45.3
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 3.9e-200 702.6 856 45.0
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 5.1e-200 702.2 853 45.6
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 6.7e-200 701.8 859 44.2
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 1.1e-199 701.0 853 45.0
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 1.5e-199 700.7 851 44.7
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 9.7e-199 698.0 851 45.4
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 3.1e-197 693.0 883 43.6
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 7.0e-197 691.8 871 43.6
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 3.5e-196 689.5 854 44.0
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 1.0e-195 688.0 852 44.5
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 1.1e-194 684.5 885 44.2
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 9.4e-194 681.4 888 42.7
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 2.3e-192 676.8 851 43.9
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 6.7e-192 675.2 837 44.2
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 1.3e-190 671.0 858 42.3
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 4.8e-190 669.1 861 43.2
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 1.1e-189 667.9 837 42.8
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 2.4e-189 666.8 852 43.9
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.2e-188 664.5 852 42.4
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 1.6e-188 664.1 874 43.2
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 8.5e-187 658.3 853 44.1
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 7.2e-186 655.2 847 42.5
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 6.1e-185 652.1 765 46.8
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 1.0e-184 651.4 854 41.5
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 1.2e-183 647.9 829 42.8
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 1.2e-180 637.9 878 42.4
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 6.1e-177 625.5 929 40.8
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.6e-175 620.2 889 41.5
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 1.7e-174 617.5 828 39.9
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.7e-174 616.3 878 41.7
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 3.7e-174 616.3 848 41.2
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 4.8e-174 615.9 842 41.7
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 6.3e-174 615.5 842 41.6
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 8.3e-174 615.1 842 41.6
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 1.1e-173 614.8 842 41.3
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 1.4e-173 614.4 842 41.3
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 5.0e-171 605.9 874 39.2
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 1.2e-167 594.7 843 40.5
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 2.2e-166 590.5 859 41.4
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 3.7e-166 589.7 843 40.1
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 1.1e-165 588.2 842 39.9
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 1.8e-165 587.4 847 40.3
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 3.2e-165 586.6 842 40.9
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 5.4e-165 585.9 842 39.7
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.0e-164 583.9 873 40.5
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 2.0e-164 583.9 838 39.9
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 2.7e-164 583.6 849 40.6
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 5.9e-164 582.4 842 39.8
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 3.9e-163 579.7 842 39.4
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 2.8e-161 573.5 845 40.5
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 8.3e-158 562.0 870 37.4
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 2.7e-156 557.0 857 38.7
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 2.7e-156 557.0 889 39.1
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 9.5e-154 548.5 843 38.0
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 2.8e-153 547.0 860 37.9
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 2.8e-153 547.0 1309 30.5
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.3e-150 538.1 670 45.2
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 1.9e-146 524.2 756 39.9
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 1.2e-145 521.5 866 35.8
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 2.4e-141 507.3 464 56.7
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 3.6e-137 493.4 866 36.8
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 1.2e-135 488.4 1337 28.7
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 2.9e-134 483.8 523 49.7
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 2.1e-124 451.1 411 55.2
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 1.5e-122 444.9 578 45.2
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 8.1e-121 439.1 871 34.8
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 6.7e-107 392.9 355 56.3
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 8.4e-102 375.9 1109 26.2
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 9.7e-98 362.5 290 60.0
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 4.8e-97 360.1 417 47.0
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 1.4e-96 358.6 305 58.0
TAR633G1719 Trochodendron aralioides HOM05D003469 ORTHO05D004084 1.4e-93 348.6 393 44.8
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 1.0e-91 342.4 776 30.5
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 2.3e-91 341.3 633 35.2
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 5.3e-88 330.1 364 48.4
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 2.7e-76 291.2 272 53.7
FvH4_6g38030 Fragaria vesca HOM05D003469 ORTHO05D004084 1.4e-75 288.9 391 38.9
CARHR018280 Cardamine hirsuta HOM05D003469 ORTHO05D004084 2.6e-74 284.6 468 33.3
MD17G1141000 Malus domestica HOM05D003469 ORTHO05D004084 9.7e-74 282.7 408 38.0
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 9.1e-72 276.2 793 28.1
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 9.4e-69 266.2 617 30.6
Cpa.g.sc21.245 Carica papaya HOM05D003469 ORTHO05D004084 1.6e-68 265.4 363 39.4
AUR62000094 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.4e-67 262.3 468 34.8
COL.COLO4_25121 Corchorus olitorius HOM05D003469 ORTHO05D004084 2.4e-64 251.5 369 37.7
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.0e-62 246.1 331 41.1
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 1.5e-61 242.3 197 57.4
CDE05G3544 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 3.2e-61 241.1 353 38.5
Potri.013G129500 Populus trichocarpa HOM05D003469 ORTHO05D000003 4.0e-59 234.2 389 35.5
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 4.4e-58 230.7 182 59.3
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.7e-55 221.5 155 68.4
SHI03015 Sapria himalayana HOM05D003469 ORTHO05D004084 3.3e-53 214.5 257 43.6
vmacro23125 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 3.5e-47 194.5 417 30.5
Medtr4g074690 Medicago truncatula HOM05D003469 ORTHO05D004084 3.4e-42 177.9 255 37.6
Thhalv10002713m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 3.3e-37 161.4 139 57.6
C04p00500 Brassica napus HOM05D003469 ORTHO05D004084 4.7e-36 157.5 351 29.1
Cre10.g464950 Chlamydomonas reinhardtii HOM05D003469 ORTHO05D004084 8.9e-35 153.3 330 29.7
Oeu035042.1 Olea europaea HOM05D003469 ORTHO05D004084 2.2e-33 148.7 252 37.3
Actinidia02459 Actinidia chinensis HOM05D003469 ORTHO05D004084 3.2e-32 144.8 121 56.2
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 1.1e-29 136.3 455 29.0
Ciclev10020572m.g Citrus clementina HOM05D003469 ORTHO05D004084 4.3e-29 134.4 309 31.7
SEGI_05114 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 3.6e-28 131.3 153 45.1
QL09p054785 Quercus lobata HOM05D003469 ORTHO05D004084 8.1e-28 130.2 155 45.8
ATR0002G001 Amborella trichopoda HOM05D003469 ORTHO05D004084 8.9e-27 126.7 81 69.1
BcaC02g12574 Brassica carinata HOM05D003469 ORTHO05D004084 4.4e-26 124.4 102 58.8
Cpa.g.sc21.244 Carica papaya HOM05D003469 ORTHO05D004084 1.7e-25 122.5 90 67.8
ECA232G2749 Erigeron canadensis HOM05D001807 ORTHO05D002044 3.7e-25 121.3 91 62.6
BcaC02g12573 Brassica carinata HOM05D003469 ORTHO05D004084 1.9e-24 119.0 240 29.2
Sabra13G0107500 Salix brachista HOM05D000001 ORTHO05D000003 2.7e-23 115.2 163 40.5
Aa31LG2G17580 Aethionema arabicum HOM05D003469 ORTHO05D004084 6.6e-22 110.5 79 64.6
Ca_16140_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.5e-21 109.4 150 36.7
Rhsim02G0229800 Rhododendron simsii HOM05D000151 ORTHO05D000074 3.3e-21 108.2 81 67.9
Haze_14034 Corylus avellana HOM05D003469 ORTHO05D004084 1.2e-20 106.3 129 40.3
Ca_16137_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 3.6e-20 104.8 152 38.8
SEGI_26656 Sequoiadendron giganteum HOM05D003469 ORTHO05D000001 1.1e-19 103.2 139 39.6
Psat0s3379g0040 Pisum sativum HOM05D003469 ORTHO05D004084 2.6e-18 98.6 121 38.8
Glyma.07G124800 Glycine max HOM05D003469 ORTHO05D004084 1.7e-17 95.9 145 35.2
Psat0s3379g0080 Pisum sativum HOM05D003469 ORTHO05D004084 3.5e-15 88.2 176 33.5
SEGI_39938 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 1.3e-14 86.3 103 43.7
Haze_14035 Corylus avellana HOM05D003469 ORTHO05D004084 2.8e-12 78.6 207 28.5
SHI03013 Sapria himalayana HOM05D003469 ORTHO05D004084 2.8e-12 78.6 102 42.2
FAN20G1461 Fragaria x ananassa HOM05D003469 ORTHO05D004084 5.3e-11 74.3 122 34.4
MCO03G148 Micromonas commoda HOM05D003469 ORTHO05D004084 9.9e-10 70.1 182 33.5
Oeu026515.1 Olea europaea HOM05D003469 ORTHO05D004084 1.3e-09 69.7 90 37.8
Cpa.g.sc21.247 Carica papaya HOM05D003469 ORTHO05D004084 3.8e-09 68.2 104 41.3
AagrBONN_evm.TU.Sc2ySwM_362.2853 Anthoceros agrestis HOM05D003469 ORTHO05D004084 1.1e-08 66.6 96 32.3
PRCOL_00004204 Prasinoderma coloniale HOM05D003469 ORTHO05D004084 4.2e-08 64.7 817 19.5
Psat0s2166g0160 Pisum sativum HOM05D003469 ORTHO05D004084 1.6e-07 62.8 81 42.0
Ca_19033_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 2.1e-07 62.4 56 50.0
Aa31LG2G17590 Aethionema arabicum HOM05D003469 ORTHO05D004084 3.9e-06 58.2 54 50.0
Sp4g05220 Schrenkiella parvula HOM05D003469 ORTHO05D004084 8.7e-06 57.0 39 61.5


User provided reference genes

Program Settings