Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0247400 Oryza sativa ssp. japonica HOM05D006330 ORTHO05D008013 8.8e-165 583.6 296 100.0
Zm00001eb168340 Zea mays HOM05D006330 ORTHO05D008013 1.3e-139 500.0 273 90.8
HPP92_007591 Vanilla planifolia HOM05D006330 ORTHO05D008013 9.8e-116 420.6 260 80.0
Lj2C1112G6 Lonicera japonica HOM05D006330 ORTHO05D008013 1.9e-114 416.4 272 77.2
PSO675G8704 Papaver somniferum HOM05D006330 ORTHO05D008013 1.9e-114 416.4 267 78.3
TAR362G0826 Trochodendron aralioides HOM05D006330 ORTHO05D008013 2.4e-114 416.0 255 80.4
MBI10_g35385_MAGBIO Magnolia biondii HOM05D006330 ORTHO05D008013 4.1e-114 415.2 269 78.4
Sopen09g015980 Solanum pennellii HOM05D006330 ORTHO05D008013 4.6e-113 411.8 260 80.0
Haze_03505 Corylus avellana HOM05D006330 ORTHO05D008013 7.8e-113 411.0 264 76.5
CiPaw.13G055600 Carya illinoinensis HOM05D006330 ORTHO05D008013 1.0e-112 410.6 258 78.3
SGA_v2.0_scaffold231G43447 Striga asiatica HOM05D006330 ORTHO05D008013 1.0e-112 410.6 268 76.1
Cfa010572 Carpinus fangiana HOM05D006330 ORTHO05D008013 1.3e-112 410.2 264 76.9
Cc01_g15880 Coffea canephora HOM05D006330 ORTHO05D008013 1.3e-112 410.2 258 79.8
RcHm_v2.0_Chr6g0282221 Rosa chinensis HOM05D006330 ORTHO05D008013 1.3e-112 410.2 291 73.2
ECA247G1307 Erigeron canadensis HOM05D006330 ORTHO05D008013 1.7e-112 409.8 272 76.5
GSVIVG01001532001 Vitis vinifera HOM05D006330 ORTHO05D008013 3.0e-112 409.1 266 77.8
Manes.12G055500 Manihot esculenta HOM05D006330 ORTHO05D008013 3.9e-112 408.7 266 77.1
SalBow3G0290 Salvia bowleyana HOM05D006330 ORTHO05D008013 6.6e-112 407.9 266 75.2
Nn7g37444 Nelumbo nucifera HOM05D006330 ORTHO05D008013 1.5e-111 406.8 255 79.2
FAN15G1514 Fragaria x ananassa HOM05D006330 ORTHO05D008013 1.9e-111 406.4 276 75.0
Thecc.01G207700 Theobroma cacao HOM05D006330 ORTHO05D008013 1.9e-111 406.4 267 75.3
Lsat_1_v5_gn_9_16880 Lactuca sativa HOM05D006330 ORTHO05D008013 4.3e-111 405.2 273 75.8
Ciclev10015989m.g Citrus clementina HOM05D006330 ORTHO05D008013 5.6e-111 404.8 260 77.7
TWI36G1481 Tripterygium wilfordii HOM05D006330 ORTHO05D008013 7.3e-111 404.4 269 76.6
DCAR_004774 Daucus carota HOM05D006330 ORTHO05D008013 2.8e-110 402.5 244 82.0
FvH4_2g17480 Fragaria vesca HOM05D006330 ORTHO05D008013 4.7e-110 401.7 276 73.9
MD10G1148200 Malus domestica HOM05D006330 ORTHO05D008013 6.2e-110 401.4 256 79.3
Gorai.007G161200 Gossypium raimondii HOM05D006330 ORTHO05D008013 8.1e-110 401.0 256 77.3
Psat4g208240 Pisum sativum HOM05D006330 ORTHO05D008013 8.1e-110 401.0 270 74.1
CDE02G1604 Ceratophyllum demersum HOM05D006330 ORTHO05D008013 1.1e-109 400.6 263 76.8
Atru.chr6.3528 Acer truncatum HOM05D006330 ORTHO05D008013 1.4e-109 400.2 255 77.6
Prupe.8G187200 Prunus persica HOM05D006330 ORTHO05D008013 1.8e-109 399.8 255 79.2
PGR044G2230 Punica granatum HOM05D006330 ORTHO05D008013 1.8e-109 399.8 257 79.4
QL09p047707 Quercus lobata HOM05D006330 ORTHO05D008013 1.8e-109 399.8 273 73.6
HanXRQChr07g0190561 Helianthus annuus HOM05D006330 ORTHO05D008013 2.3e-109 399.4 261 77.4
MSTRG.21296 Avicennia marina HOM05D006330 ORTHO05D008013 4.0e-109 398.7 272 72.8
Duzib133G1456 Durio zibethinus HOM05D006330 ORTHO05D008013 4.0e-109 398.7 258 76.0
FAN24G2605 Fragaria x ananassa HOM05D006330 ORTHO05D008013 4.0e-109 398.7 266 75.9
Sc05g0001630 Simmondsia chinensis HOM05D006330 ORTHO05D008013 4.0e-109 398.7 256 76.2
Gohir.A11G143900 Gossypium hirsutum HOM05D006330 ORTHO05D008013 5.2e-109 398.3 256 77.0
Gohir.D11G150300 Gossypium hirsutum HOM05D006330 ORTHO05D008013 5.2e-109 398.3 256 77.0
Eucgr.K02361 Eucalyptus grandis HOM05D006330 ORTHO05D008013 6.8e-109 397.9 264 75.8
Sed0009827 Sechium edule HOM05D006330 ORTHO05D008013 6.8e-109 397.9 285 70.9
THA.LOC104804704 Tarenaya hassleriana HOM05D006330 ORTHO05D008013 1.2e-108 397.1 264 76.9
Aqoxy2G02383 Aquilegia oxysepala HOM05D006330 ORTHO05D008013 4.4e-108 395.2 251 77.7
Phvul.010G036400 Phaseolus vulgaris HOM05D006330 ORTHO05D008013 7.5e-108 394.4 259 74.9
VMungo0331G1131 Vigna mungo HOM05D006330 ORTHO05D008013 9.8e-108 394.0 256 76.2
arahy.Tifrunner.gnm1.ann1.3RIK1P Arachis hypogaea HOM05D006330 ORTHO05D008013 1.3e-107 393.7 265 74.0
CANSAT01G2136 Cannabis sativa HOM05D006330 ORTHO05D008013 1.3e-107 393.7 283 70.7
TPR.G17377 Trifolium pratense HOM05D006330 ORTHO05D008013 1.3e-107 393.7 265 73.2
Glyma.03G097100 Glycine max HOM05D006330 ORTHO05D008013 1.7e-107 393.3 255 75.3
EL10Ac5g10587 Beta vulgaris HOM05D006330 ORTHO05D008013 2.9e-107 392.5 251 77.3
Migut.D00775 Erythranthe guttata HOM05D006330 ORTHO05D008013 2.9e-107 392.5 256 75.4
ClCG09G008360 Citrullus lanatus HOM05D006330 ORTHO05D008013 1.1e-106 390.6 250 77.6
Potri.014G175500 Populus trichocarpa HOM05D006330 ORTHO05D008013 1.1e-106 390.6 262 76.3
Actinidia23802 Actinidia chinensis HOM05D006330 ORTHO05D008013 1.9e-106 389.8 256 75.4
CsaV3_7G026730 Cucumis sativus L. HOM05D006330 ORTHO05D008013 2.4e-106 389.4 270 73.0
arahy.Tifrunner.gnm1.ann1.84ZR2Z Arachis hypogaea HOM05D006330 ORTHO05D008013 4.1e-106 388.7 263 73.4
Glyma.07G124200 Glycine max HOM05D006330 ORTHO05D008013 4.1e-106 388.7 255 74.1
MELO3C021126.2 Cucumis melo HOM05D006330 ORTHO05D008013 7.1e-106 387.9 270 73.0
Medtr8g010130 Medicago truncatula HOM05D006330 ORTHO05D008013 1.6e-105 386.7 256 74.2
Lalb_Chr12g0210221 Lupinus albus HOM05D006330 ORTHO05D008013 1.3e-104 383.6 255 74.1
ATR0743G141 Amborella trichopoda HOM05D006330 ORTHO05D008013 1.7e-104 383.3 249 78.3
Actinidia34530 Actinidia chinensis HOM05D006330 ORTHO05D008013 1.1e-103 380.6 256 74.2
Ca_23158_v3 Cicer arietinum L. HOM05D006330 ORTHO05D008013 3.3e-103 379.0 256 73.8
Aa31sc18G40 Aethionema arabicum HOM05D006330 ORTHO05D008013 7.3e-103 377.9 276 71.4
AUR62008069 Chenopodium quinoa HOM05D006330 ORTHO05D008013 2.8e-102 375.9 239 79.5
Hma1.2p1_0161F.1_g071650 Hydrangea macrophylla HOM05D006330 ORTHO05D008013 1.4e-101 373.6 240 77.9
Rhsim01G0247700 Rhododendron simsii HOM05D006330 ORTHO05D008013 1.2e-100 370.5 240 74.6
vmacro14689 Vaccinium macrocarpon HOM05D006330 ORTHO05D008013 5.8e-100 368.2 253 71.9
Ciclev10018050m.g Citrus clementina HOM05D006330 ORTHO05D008013 1.7e-99 366.7 236 78.4
Carub.0003s2579 Capsella rubella HOM05D006330 ORTHO05D008013 8.4e-99 364.4 260 71.2
Pp3c24_1560 Physcomitrium patens HOM05D006330 ORTHO05D008013 8.4e-99 364.4 270 69.6
AL3G41590 Arabidopsis lyrata HOM05D006330 ORTHO05D008013 2.1e-97 359.8 264 69.7
AT3G25470 Arabidopsis thaliana HOM05D006330 ORTHO05D008013 3.0e-96 355.9 259 69.5
Thhalv10002617m.g Eutrema salsugineum HOM05D006330 ORTHO05D008013 3.0e-96 355.9 240 73.8
Mapoly0006s0124 Marchantia polymorpha HOM05D006330 ORTHO05D008013 3.9e-96 355.5 250 71.6
Sabra14G0134300 Salix brachista HOM05D006330 ORTHO05D008013 6.6e-96 354.8 271 70.5
Hund09482 Selenicereus undatus HOM05D006330 ORTHO05D008013 8.6e-96 354.4 224 79.0
C03p54570 Brassica napus HOM05D006330 ORTHO05D008013 3.3e-95 352.4 250 71.6
BolC3t17744H Brassica oleracea HOM05D006330 ORTHO05D008013 3.3e-95 352.4 250 71.6
Sp3g22990 Schrenkiella parvula HOM05D006330 ORTHO05D008013 4.3e-95 352.1 249 71.5
BcaB08g34453 Brassica carinata HOM05D006330 ORTHO05D008013 9.6e-95 350.9 250 71.2
CARHR101770 Cardamine hirsuta HOM05D006330 ORTHO05D008013 9.6e-95 350.9 250 71.2
A03p44190 Brassica napus HOM05D006330 ORTHO05D008013 1.2e-94 350.5 250 71.2
BraA03t13548Z Brassica rapa HOM05D006330 ORTHO05D008013 1.6e-94 350.1 250 71.2
BcaC06g35817 Brassica carinata HOM05D006330 ORTHO05D008013 1.1e-93 347.4 249 70.7
A07p06930 Brassica napus HOM05D006330 ORTHO05D008013 1.1e-93 347.4 249 70.7
BraA07t28484Z Brassica rapa HOM05D006330 ORTHO05D008013 1.1e-93 347.4 249 70.7
BolC7t41520H Brassica oleracea HOM05D006330 ORTHO05D008013 2.6e-92 342.8 250 70.4
C07p10530 Brassica napus HOM05D006330 ORTHO05D008013 2.2e-91 339.7 250 70.0
CBR_g60689 Chara braunii HOM05D006330 ORTHO05D008013 1.6e-89 333.6 252 68.3
COL.COLO4_34269 Corchorus olitorius HOM05D006330 ORTHO05D008013 1.7e-88 330.1 212 77.8
AUR62028646 Chenopodium quinoa HOM05D006330 ORTHO05D008013 6.6e-88 328.2 213 78.4
Lj3g0006219 Lotus japonicus HOM05D006330 ORTHO05D008013 1.5e-87 327.0 217 75.1
SMO141G0006 Selaginella moellendorffii HOM05D006330 ORTHO05D008013 4.3e-87 325.5 253 66.0
Oeu049580.1 Olea europaea HOM05D006330 ORTHO05D008013 1.3e-86 323.9 223 73.1
Peaxi162Scf00841g00112 Petunia axillaris HOM05D006330 ORTHO05D008013 2.1e-86 323.2 287 63.1
BcaC01g03225 Brassica carinata HOM05D006330 ORTHO05D008013 6.9e-85 318.2 250 66.8
Nitab4.5_0000038g0340 Nicotiana tabacum HOM05D006330 ORTHO05D008013 2.6e-84 316.2 201 81.1
Nitab4.5_0010469g0010 Nicotiana tabacum HOM05D006330 ORTHO05D008013 2.6e-84 316.2 201 80.6
SMO186G0001 Selaginella moellendorffii HOM05D006330 ORTHO05D008013 2.6e-84 316.2 244 66.0
Dinv28793 Davidia involucrata HOM05D006330 ORTHO05D008013 5.8e-84 315.1 233 71.7
Solyc09g047870.4 Solanum lycopersicum HOM05D006330 ORTHO05D008013 7.6e-84 314.7 202 81.2
CSS0004044 Camellia sinensis var. sinensis HOM05D006330 ORTHO05D008013 2.7e-81 306.2 239 66.5
PSO732G0743 Papaver somniferum HOM05D006330 ORTHO05D008013 1.8e-77 293.5 178 82.0
Cpa.g.sc8.41 Carica papaya HOM05D006330 ORTHO05D008013 1.1e-74 284.3 214 69.2
BcaB06g26747 Brassica carinata HOM05D006330 ORTHO05D008013 7.1e-74 281.6 267 57.3
MCO07G099 Micromonas commoda HOM05D006330 ORTHO05D008013 2.5e-71 273.1 240 60.4
HanXRQChr07g0198371 Helianthus annuus HOM05D006330 ORTHO05D008013 2.7e-65 253.1 177 74.6
Cre10.g428900 Chlamydomonas reinhardtii HOM05D006330 ORTHO05D008013 3.0e-64 249.6 246 57.3
FAN27G2337 Fragaria x ananassa HOM05D006330 ORTHO05D008013 7.4e-63 245.0 276 53.3
PRCOL_00000451 Prasinoderma coloniale HOM05D006330 ORTHO05D008013 1.0e-51 208.0 288 44.8
CAN.G253.5 Capsicum annuum HOM05D006330 ORTHO05D008013 8.5e-51 204.9 130 80.8
SEGI_37995 Sequoiadendron giganteum HOM05D006330 ORTHO05D008013 1.3e-43 181.0 116 75.0
AagrBONN_evm.TU.Sc2ySwM_368.2380 Anthoceros agrestis HOM05D006330 ORTHO05D008013 4.4e-39 166.0 142 58.5
arahy.Tifrunner.gnm1.ann1.VBTZ6V Arachis hypogaea HOM05D006330 ORTHO05D008013 1.6e-36 157.5 112 68.8
PSO675G8411 Papaver somniferum HOM05D006330 ORTHO05D008013 5.9e-36 155.6 95 73.7
Hma1.2p1_0161F.1_g071660 Hydrangea macrophylla HOM05D006330 ORTHO05D008013 6.7e-32 142.1 82 80.5
CDE04G0367 Ceratophyllum demersum HOM05D006330 ORTHO05D008013 5.9e-28 129.0 86 73.3
Cfa009322 Carpinus fangiana HOM05D006614 ORTHO05D008217 1.6e-25 120.9 89 65.2
BcaB06g26875 Brassica carinata HOM05D006330 ORTHO05D008013 8.6e-11 72.0 64 59.4
RcHm_v2.0_Chr5g0065021 Rosa chinensis HOM05D006330 ORTHO05D008013 3.6e-09 66.6 45 71.1
VMungo1383G2211 Vigna mungo HOM05D006330 ORTHO05D434633 4.7e-09 66.2 44 68.2


User provided reference genes

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