Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 3.5e-258 894.4 452 100.0
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 3.5e-181 638.6 464 72.0
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 3.1e-177 625.5 458 72.1
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 2.1e-141 506.5 426 61.3
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 4.8e-138 495.4 430 58.1
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 1.8e-137 493.4 430 57.9
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 4.1e-137 492.3 432 59.0
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 6.9e-137 491.5 438 58.0
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 7.7e-136 488.0 430 60.5
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 1.0e-135 487.6 423 59.1
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 2.9e-135 486.1 428 58.2
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 3.8e-135 485.7 426 59.2
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 8.5e-135 484.6 429 59.0
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 1.1e-134 484.2 427 58.1
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 1.4e-134 483.8 429 58.7
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 1.9e-134 483.4 456 55.9
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 1.2e-133 480.7 432 56.7
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 1.2e-133 480.7 422 58.5
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 6.1e-133 478.4 424 57.3
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 3.0e-132 476.1 409 60.6
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 1.5e-131 473.8 423 59.1
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 1.9e-131 473.4 422 58.8
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 4.3e-131 472.2 428 58.4
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 7.4e-131 471.5 420 58.3
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 7.4e-131 471.5 450 56.7
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 2.2e-130 469.9 426 56.8
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 2.8e-130 469.5 428 57.7
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 3.7e-130 469.2 428 57.7
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 1.1e-129 467.6 442 55.9
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 1.8e-129 466.8 424 56.6
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 2.4e-129 466.5 438 56.6
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 4.1e-129 465.7 431 55.9
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 4.1e-129 465.7 433 55.9
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 9.1e-129 464.5 421 58.2
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 9.1e-129 464.5 428 56.8
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 1.5e-128 463.8 443 56.9
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 4.5e-128 462.2 415 57.3
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 5.9e-128 461.8 432 57.6
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 1.0e-127 461.1 429 55.9
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 1.0e-127 461.1 433 56.4
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 1.3e-127 460.7 443 56.4
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 5.0e-127 458.8 420 57.9
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 8.5e-127 458.0 428 57.2
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 1.1e-126 457.6 447 55.9
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 1.4e-126 457.2 391 60.6
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 1.9e-126 456.8 437 54.7
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 2.5e-126 456.4 434 56.0
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 2.5e-126 456.4 429 56.2
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 1.2e-125 454.1 432 56.7
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 1.6e-125 453.8 429 55.5
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 2.7e-125 453.0 430 57.0
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 3.6e-125 452.6 388 61.1
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 4.7e-125 452.2 429 55.5
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 7.9e-125 451.4 434 55.1
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 1.0e-124 451.1 432 55.1
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 1.4e-124 450.7 436 54.4
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 1.1e-123 447.6 429 54.3
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 2.0e-123 446.8 417 55.4
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 2.0e-123 446.8 417 55.4
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 2.6e-123 446.4 417 55.4
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 2.6e-123 446.4 429 54.8
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 5.7e-123 445.3 429 55.2
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 1.8e-121 440.3 426 56.6
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 3.4e-120 436.0 350 64.9
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 4.5e-120 435.6 449 53.0
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 1.0e-119 434.5 448 52.5
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 5.0e-119 432.2 421 53.4
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 6.5e-119 431.8 433 54.3
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 6.5e-119 431.8 433 54.3
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 7.2e-118 428.3 433 53.8
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 1.6e-117 427.2 443 52.6
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 2.1e-117 426.8 417 55.4
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 3.0e-116 422.9 431 52.9
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 5.2e-116 422.2 426 53.8
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 8.8e-116 421.4 428 53.3
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 1.5e-115 420.6 426 53.8
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 7.4e-115 418.3 383 58.0
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 1.7e-114 417.2 417 55.2
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 2.8e-114 416.4 430 52.1
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 4.8e-114 415.6 455 49.0
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 6.3e-114 415.2 414 54.6
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 1.4e-113 414.1 434 51.4
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 5.3e-113 412.1 431 51.0
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 2.0e-112 410.2 433 50.3
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 5.9e-112 408.7 438 52.1
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 7.7e-112 408.3 355 59.2
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 1.7e-111 407.1 433 50.6
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 3.8e-111 406.0 422 53.1
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 6.5e-111 405.2 435 50.8
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 1.1e-110 404.4 395 53.4
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 2.5e-110 403.3 400 53.0
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 1.0e-108 397.9 431 51.0
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 2.3e-108 396.7 455 48.8
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 3.0e-108 396.4 456 48.7
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 4.0e-108 396.0 435 52.0
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 6.7e-108 395.2 449 49.2
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 6.7e-108 395.2 451 49.0
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 1.2e-107 394.4 384 54.9
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 1.5e-107 394.0 434 49.5
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 2.0e-107 393.7 455 47.9
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 5.7e-107 392.1 455 47.9
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 9.7e-107 391.3 431 50.1
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 1.1e-105 387.9 432 50.0
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 4.1e-105 386.0 425 49.2
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 3.8e-103 379.4 389 51.2
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 1.2e-101 374.4 320 60.0
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 1.2e-101 374.4 350 56.6
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 2.1e-101 373.6 412 48.1
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.6e-99 366.7 308 60.7
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 1.7e-98 364.0 345 56.2
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 7.0e-97 358.6 395 49.6
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 7.0e-97 358.6 395 49.6
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 9.1e-97 358.2 302 60.3
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 6.6e-95 352.1 393 47.6
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 8.0e-93 345.1 359 49.9
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 1.2e-91 341.3 424 44.8
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 9.8e-91 338.2 275 62.5
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 8.3e-90 335.1 466 44.2
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 7.5e-83 312.0 303 53.1
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 3.7e-82 309.7 269 57.6
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 6.6e-79 298.9 314 51.0
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 2.1e-77 293.9 322 47.5
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 2.0e-75 287.3 430 44.2
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 2.6e-67 260.4 141 89.4
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 1.9e-65 254.2 157 80.9
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 5.4e-65 252.7 156 80.1
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 5.4e-65 252.7 156 80.1
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 1.6e-64 251.1 155 80.0
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 2.7e-64 250.4 157 80.3
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 1.3e-63 248.1 156 79.5
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 2.6e-59 233.8 145 77.9
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 9.9e-59 231.9 268 47.8
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 1.4e-57 228.0 268 46.6
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 9.2e-57 225.3 351 39.9
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 1.6e-56 224.6 267 45.7
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 6.0e-56 222.6 268 46.6
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 7.8e-56 222.2 323 39.6
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 1.0e-55 221.9 280 43.2
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 4.8e-53 213.0 133 80.5
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 2.4e-52 210.7 184 60.3
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 5.8e-51 206.1 514 35.0
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 6.4e-50 202.6 266 44.4
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 9.3e-49 198.7 231 45.5
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 2.7e-48 197.2 182 56.6
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 5.6e-46 189.5 124 73.4
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 7.3e-46 189.1 131 77.1
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 1.4e-44 184.9 193 50.8
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 3.5e-40 170.2 230 44.8
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 5.1e-39 166.4 99 85.9
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 1.4e-36 158.3 178 51.1
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 2.4e-36 157.5 164 49.4
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 7.1e-33 146.0 469 28.6
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 1.2e-32 145.2 106 66.0
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 7.9e-32 142.5 129 58.1
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 1.0e-31 142.1 331 30.2
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 2.1e-29 134.4 146 50.0
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.8e-28 131.3 291 32.3
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 2.6e-27 127.5 141 44.7
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 1.1e-22 112.1 215 36.3
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 1.8e-20 104.8 68 79.4
Ciclev10006318m.g Citrus clementina HOM05D004012 ORTHO05D004752 4.5e-19 100.1 58 87.9
Oeu046377.1 Olea europaea HOM05D004012 ORTHO05D004752 5.9e-19 99.8 56 92.9
PRCOL_00001851 Prasinoderma coloniale HOM05D004012 ORTHO05D004752 3.6e-16 90.5 195 32.8
PSO761G0569 Papaver somniferum HOM05D004012 ORTHO05D004752 4.5e-11 73.6 49 67.3
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 4.5e-11 73.6 117 34.2
Actinidia12240 Actinidia chinensis HOM05D004012 ORTHO05D004752 4.2e-09 67.0 94 39.4
Actinidia20627 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.7e-08 64.3 62 48.4


User provided reference genes

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