Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0224301 Oryza sativa ssp. japonica HOM05D001817 ORTHO05D001647 4.7e-58 228.0 148 100.0
Os11g0224200 Oryza sativa ssp. japonica HOM05D001817 ORTHO05D001647 1.6e-50 203.0 102 96.1
Os11g0222800 Oryza sativa ssp. japonica HOM05D001817 ORTHO05D001647 4.0e-49 198.4 101 95.0
ATR0582G316 Amborella trichopoda HOM05D001817 ORTHO05D001647 2.9e-15 85.9 105 41.0
TAR622G0422 Trochodendron aralioides HOM05D001817 ORTHO05D001647 6.6e-12 74.7 98 39.8
TAR622G1058 Trochodendron aralioides HOM05D001817 ORTHO05D001647 6.6e-12 74.7 98 39.8
TAR622G0534 Trochodendron aralioides HOM05D001817 ORTHO05D001647 7.3e-11 71.2 103 37.9
Hund04268 Selenicereus undatus HOM05D008125 ORTHO05D010359 1.2e-10 70.5 101 35.6
TAR371G0865 Trochodendron aralioides HOM05D001817 ORTHO05D001647 2.1e-10 69.7 105 35.2
PGR044G0606 Punica granatum HOM05D001817 ORTHO05D001647 4.0e-09 65.5 94 38.3
TWI34G0730 Tripterygium wilfordii HOM05D001817 ORTHO05D001647 4.0e-09 65.5 87 43.7
HPP92_021712 Vanilla planifolia HOM05D001817 ORTHO05D001647 4.0e-09 65.5 102 38.2
FAN24G1684 Fragaria x ananassa HOM05D001817 ORTHO05D001647 1.2e-08 63.9 96 37.5
FAN27G0609 Fragaria x ananassa HOM05D001817 ORTHO05D001647 1.2e-08 63.9 98 36.7
TWI63G0410 Tripterygium wilfordii HOM05D001817 ORTHO05D001647 1.5e-08 63.5 87 41.4
TAR629G2934 Trochodendron aralioides HOM05D001817 ORTHO05D001647 1.5e-08 63.5 98 34.7
HPP92_021690 Vanilla planifolia HOM05D001817 ORTHO05D001647 1.5e-08 63.5 90 41.1
EL10Ac6g15442 Beta vulgaris HOM05D001817 ORTHO05D001647 2.0e-08 63.2 100 34.0
TAR629G0897 Trochodendron aralioides HOM05D001817 ORTHO05D001647 2.0e-08 63.2 98 34.7
ATR0582G157 Amborella trichopoda HOM05D001817 ORTHO05D001647 2.6e-08 62.8 101 33.7
Lj5g0009014 Lotus japonicus HOM05D001817 ORTHO05D001647 5.8e-08 61.6 93 36.6
ClCG05G016680 Citrullus lanatus HOM05D001817 ORTHO05D001647 7.6e-08 61.2 105 35.2
MBI07_g02003_MAGBIO Magnolia biondii HOM05D001817 ORTHO05D001647 7.6e-08 61.2 100 34.0
Sc06g0000520 Simmondsia chinensis HOM05D001817 ORTHO05D001647 7.6e-08 61.2 107 37.4
arahy.Tifrunner.gnm1.ann1.J1V55D Arachis hypogaea HOM05D001817 ORTHO05D001647 9.9e-08 60.8 89 36.0
arahy.Tifrunner.gnm1.ann1.SUQM4P Arachis hypogaea HOM05D001817 ORTHO05D001647 9.9e-08 60.8 89 36.0
MBI18_g29804_MAGBIO Magnolia biondii HOM05D001817 ORTHO05D001647 9.9e-08 60.8 102 35.3
Sc03g0006290 Simmondsia chinensis HOM05D001817 ORTHO05D001647 9.9e-08 60.8 101 32.7
Solyc10g054673.1 Solanum lycopersicum HOM05D001817 ORTHO05D001647 9.9e-08 60.8 101 34.7
Thecc.02G154500 Theobroma cacao HOM05D001817 ORTHO05D001647 9.9e-08 60.8 84 38.1
CDE05G1510 Ceratophyllum demersum HOM05D000485 ORTHO05D000341 1.3e-07 60.5 98 36.7
Solyc10g054677.1 Solanum lycopersicum HOM05D001817 ORTHO05D001647 1.3e-07 60.5 101 34.7
Atru.chr7.2474 Acer truncatum HOM05D001817 ORTHO05D001647 1.7e-07 60.1 92 34.8
CARHR239990 Cardamine hirsuta HOM05D001817 ORTHO05D001647 1.7e-07 60.1 83 39.8
ClCG05G016690 Citrullus lanatus HOM05D001817 ORTHO05D001647 3.8e-07 58.9 86 39.5
Thhalv10026845m.g Eutrema salsugineum HOM05D001817 ORTHO05D001647 3.8e-07 58.9 103 34.0
Sed0003642 Sechium edule HOM05D001817 ORTHO05D001647 3.8e-07 58.9 92 37.0
Lalb_Chr12g0205721 Lupinus albus HOM05D001817 ORTHO05D001647 4.9e-07 58.5 101 31.7
Sp7g29890 Schrenkiella parvula HOM05D001817 ORTHO05D001647 4.9e-07 58.5 86 38.4
Lsat_1_v5_gn_6_115820 Lactuca sativa HOM05D001817 ORTHO05D001647 6.4e-07 58.2 102 33.3
A01p06210 Brassica napus HOM05D001817 ORTHO05D001647 8.4e-07 57.8 84 34.5
Carub.0007s0846 Capsella rubella HOM05D001817 ORTHO05D001647 1.1e-06 57.4 105 34.3
CDE06G0004 Ceratophyllum demersum HOM05D001817 ORTHO05D001647 1.1e-06 57.4 101 37.6
Phvul.006G043500 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 1.1e-06 57.4 92 37.0
Phvul.007G030200 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 1.1e-06 57.4 85 38.8
Phvul.007G030500 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 1.1e-06 57.4 85 38.8
QL07p000848 Quercus lobata HOM05D001817 ORTHO05D001647 1.1e-06 57.4 86 40.7
QL07p000880 Quercus lobata HOM05D001817 ORTHO05D001647 1.1e-06 57.4 86 40.7
QL12p013638 Quercus lobata HOM05D001817 ORTHO05D001647 1.1e-06 57.4 86 40.7
Atru.chr7.2473 Acer truncatum HOM05D001817 ORTHO05D001647 1.4e-06 57.0 92 33.7
ATR0582G117 Amborella trichopoda HOM05D001817 ORTHO05D001647 1.4e-06 57.0 84 36.9
CAN.G111.7 Capsicum annuum HOM05D001817 ORTHO05D001647 1.4e-06 57.0 92 31.5
CDE02G0050 Ceratophyllum demersum HOM05D001817 ORTHO05D001647 1.4e-06 57.0 101 35.6
Sc03g0006280 Simmondsia chinensis HOM05D001817 ORTHO05D001647 1.4e-06 57.0 98 34.7
HPP92_015931 Vanilla planifolia HOM05D001817 ORTHO05D001647 1.4e-06 57.0 93 31.2
BcaC09g51933 Brassica carinata HOM05D000025 ORTHO05D001647 1.9e-06 56.6 84 39.3
A01p06720 Brassica napus HOM05D001817 ORTHO05D001647 1.9e-06 56.6 84 39.3
C01p07480 Brassica napus HOM05D001817 ORTHO05D001647 1.9e-06 56.6 84 39.3
BolC1t00731H Brassica oleracea HOM05D001817 ORTHO05D001647 1.9e-06 56.6 84 39.3
Sed0018471 Sechium edule HOM05D001817 ORTHO05D001647 1.9e-06 56.6 89 36.0
THA.LOC104818605 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 1.9e-06 56.6 100 29.0
AL7G19800 Arabidopsis lyrata HOM05D001817 ORTHO05D001647 2.4e-06 56.2 84 36.9
AUR62029426 Chenopodium quinoa HOM05D001817 ORTHO05D001647 2.4e-06 56.2 100 29.0
Gohir.D13G060100 Gossypium hirsutum HOM05D001817 ORTHO05D001647 2.4e-06 56.2 86 34.9
Sabra09G0098900 Salix brachista HOM05D001817 ORTHO05D001647 2.4e-06 56.2 92 33.7
Sed0012505 Sechium edule HOM05D001817 ORTHO05D001647 2.4e-06 56.2 85 36.5
BcaC09g51998 Brassica carinata HOM05D001817 ORTHO05D001647 3.2e-06 55.8 84 33.3
C01p06850 Brassica napus HOM05D001817 ORTHO05D001647 3.2e-06 55.8 84 33.3
Manes.02G218600 Manihot esculenta HOM05D001817 ORTHO05D001647 3.2e-06 55.8 93 37.6
Sed0003760 Sechium edule HOM05D001817 ORTHO05D001647 3.2e-06 55.8 85 35.3
VMungo0720G0118 Vigna mungo HOM05D001817 ORTHO05D001647 3.2e-06 55.8 89 34.8
AT4G32090 Arabidopsis thaliana HOM05D001817 ORTHO05D001647 4.2e-06 55.5 85 36.5
BraA01t00588Z Brassica rapa HOM05D001817 ORTHO05D001647 4.2e-06 55.5 84 33.3
MELO3C033004.2 Cucumis melo HOM05D001817 ORTHO05D001647 4.2e-06 55.5 85 36.5
CsaV3_3G046170 Cucumis sativus L. HOM05D001817 ORTHO05D001647 4.2e-06 55.5 94 34.0
Lj3g0023162 Lotus japonicus HOM05D001817 ORTHO05D001647 4.2e-06 55.5 97 36.1
Thecc.02G154600 Theobroma cacao HOM05D001817 ORTHO05D001647 4.2e-06 55.5 86 36.0
MELO3C003721.2 Cucumis melo HOM05D001817 ORTHO05D001647 5.4e-06 55.1 89 34.8
Gohir.A13G061900 Gossypium hirsutum HOM05D001817 ORTHO05D001647 5.4e-06 55.1 86 34.9
MBI07_g02004_MAGBIO Magnolia biondii HOM05D001817 ORTHO05D001647 5.4e-06 55.1 100 35.0
Sopen10g024540 Solanum pennellii HOM05D001817 ORTHO05D001647 5.4e-06 55.1 92 34.8
THA.LOC104818607 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 5.4e-06 55.1 100 28.0
THA.LOC104818611 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 5.4e-06 55.1 100 28.0
TPR.G8 Trifolium pratense HOM05D001817 ORTHO05D001647 5.4e-06 55.1 87 35.6
Gorai.013G068000 Gossypium raimondii HOM05D001817 ORTHO05D001647 7.1e-06 54.7 86 33.7
Potri.004G167900 Populus trichocarpa HOM05D001817 ORTHO05D001647 7.1e-06 54.7 91 33.0
Glyma.10G113700 Glycine max HOM05D001817 ORTHO05D001647 9.2e-06 54.3 97 35.1
PSO675G1843 Papaver somniferum HOM05D001817 ORTHO05D001647 9.2e-06 54.3 100 30.0


User provided reference genes

Program Settings