Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0222800 Oryza sativa ssp. japonica HOM05D001817 ORTHO05D001647 5.5e-61 237.7 139 100.0
Os11g0224200 Oryza sativa ssp. japonica HOM05D001817 ORTHO05D001647 5.4e-56 221.1 137 88.3
Os11g0224301 Oryza sativa ssp. japonica HOM05D001817 ORTHO05D001647 4.9e-49 198.0 101 95.0
ATR0582G316 Amborella trichopoda HOM05D001817 ORTHO05D001647 1.3e-14 83.6 100 42.0
TAR622G0534 Trochodendron aralioides HOM05D001817 ORTHO05D001647 1.6e-12 76.6 96 41.7
TAR622G0422 Trochodendron aralioides HOM05D001817 ORTHO05D001647 2.8e-12 75.9 89 42.7
TAR622G1058 Trochodendron aralioides HOM05D001817 ORTHO05D001647 2.8e-12 75.9 89 42.7
Hund04268 Selenicereus undatus HOM05D008125 ORTHO05D010359 2.0e-10 69.7 100 36.0
TAR371G0865 Trochodendron aralioides HOM05D001817 ORTHO05D001647 4.4e-10 68.6 102 35.3
ATR0582G157 Amborella trichopoda HOM05D001817 ORTHO05D001647 2.2e-09 66.2 100 33.0
TWI34G0730 Tripterygium wilfordii HOM05D001817 ORTHO05D001647 2.2e-09 66.2 99 40.4
MBI07_g02003_MAGBIO Magnolia biondii HOM05D001817 ORTHO05D001647 3.8e-09 65.5 101 35.6
PGR044G0606 Punica granatum HOM05D001817 ORTHO05D001647 3.8e-09 65.5 90 34.4
TWI63G0410 Tripterygium wilfordii HOM05D001817 ORTHO05D001647 6.4e-09 64.7 86 43.0
TAR629G2934 Trochodendron aralioides HOM05D001817 ORTHO05D001647 8.4e-09 64.3 92 34.8
TAR629G0897 Trochodendron aralioides HOM05D001817 ORTHO05D001647 1.1e-08 63.9 92 34.8
HPP92_021712 Vanilla planifolia HOM05D001817 ORTHO05D001647 1.4e-08 63.5 100 36.0
HPP92_021690 Vanilla planifolia HOM05D001817 ORTHO05D001647 1.9e-08 63.2 88 38.6
ATR0582G117 Amborella trichopoda HOM05D001817 ORTHO05D001647 2.4e-08 62.8 84 38.1
arahy.Tifrunner.gnm1.ann1.J1V55D Arachis hypogaea HOM05D001817 ORTHO05D001647 5.4e-08 61.6 88 37.5
arahy.Tifrunner.gnm1.ann1.SUQM4P Arachis hypogaea HOM05D001817 ORTHO05D001647 5.4e-08 61.6 88 37.5
EL10Ac6g15442 Beta vulgaris HOM05D001817 ORTHO05D001647 5.4e-08 61.6 99 34.3
CDE05G1510 Ceratophyllum demersum HOM05D000485 ORTHO05D000341 5.4e-08 61.6 92 39.1
FAN27G0609 Fragaria x ananassa HOM05D001817 ORTHO05D001647 5.4e-08 61.6 93 36.6
Sed0003642 Sechium edule HOM05D001817 ORTHO05D001647 5.4e-08 61.6 92 35.9
Sed0018471 Sechium edule HOM05D001817 ORTHO05D001647 5.4e-08 61.6 86 38.4
ClCG05G016690 Citrullus lanatus HOM05D001817 ORTHO05D001647 7.1e-08 61.2 85 40.0
Solyc10g054673.1 Solanum lycopersicum HOM05D001817 ORTHO05D001647 9.3e-08 60.8 100 34.0
Thecc.02G154500 Theobroma cacao HOM05D001817 ORTHO05D001647 9.3e-08 60.8 83 37.3
Atru.chr7.2474 Acer truncatum HOM05D001817 ORTHO05D001647 1.2e-07 60.5 91 34.1
FAN24G1684 Fragaria x ananassa HOM05D001817 ORTHO05D001647 1.2e-07 60.5 91 38.5
Lj5g0009014 Lotus japonicus HOM05D001817 ORTHO05D001647 1.2e-07 60.5 89 36.0
Solyc10g054677.1 Solanum lycopersicum HOM05D001817 ORTHO05D001647 1.2e-07 60.5 100 34.0
ClCG05G016680 Citrullus lanatus HOM05D001817 ORTHO05D001647 1.6e-07 60.1 99 33.3
Lalb_Chr12g0205721 Lupinus albus HOM05D001817 ORTHO05D001647 2.1e-07 59.7 86 34.9
FAN27G3307 Fragaria x ananassa HOM05D000140 ORTHO05D000087 2.7e-07 59.3 105 34.3
QL07p000848 Quercus lobata HOM05D001817 ORTHO05D001647 2.7e-07 59.3 85 40.0
QL07p000880 Quercus lobata HOM05D001817 ORTHO05D001647 2.7e-07 59.3 85 40.0
QL12p013638 Quercus lobata HOM05D001817 ORTHO05D001647 2.7e-07 59.3 85 40.0
Sc03g0006280 Simmondsia chinensis HOM05D001817 ORTHO05D001647 2.7e-07 59.3 92 37.0
CARHR239990 Cardamine hirsuta HOM05D001817 ORTHO05D001647 3.5e-07 58.9 83 39.8
Thhalv10026845m.g Eutrema salsugineum HOM05D001817 ORTHO05D001647 3.5e-07 58.9 102 35.3
Lsat_1_v5_gn_6_115820 Lactuca sativa HOM05D001817 ORTHO05D001647 3.5e-07 58.9 101 32.7
Phvul.006G043500 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 3.5e-07 58.9 91 38.5
Phvul.007G030200 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 3.5e-07 58.9 100 37.0
Phvul.007G030500 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 3.5e-07 58.9 84 40.5
Sc03g0006290 Simmondsia chinensis HOM05D001817 ORTHO05D001647 3.5e-07 58.9 91 33.0
Sp7g29890 Schrenkiella parvula HOM05D001817 ORTHO05D001647 4.6e-07 58.5 84 38.1
FvH4_2g27480 Fragaria vesca HOM05D001817 ORTHO05D001647 6.0e-07 58.2 91 38.5
FAN15G2483 Fragaria x ananassa HOM05D000140 ORTHO05D000087 6.0e-07 58.2 91 38.5
FAN24G1722 Fragaria x ananassa HOM05D000140 ORTHO05D000087 6.0e-07 58.2 91 38.5
Gohir.D13G060100 Gossypium hirsutum HOM05D001817 ORTHO05D001647 6.0e-07 58.2 85 34.1
Lalb_Chr07g0186901 Lupinus albus HOM05D001817 ORTHO05D001647 6.0e-07 58.2 102 32.4
MBI18_g29804_MAGBIO Magnolia biondii HOM05D001817 ORTHO05D001647 6.0e-07 58.2 105 36.2
CAN.G111.7 Capsicum annuum HOM05D001817 ORTHO05D001647 7.9e-07 57.8 90 30.0
MELO3C003721.2 Cucumis melo HOM05D001817 ORTHO05D001647 7.9e-07 57.8 88 34.1
Prupe.1G484000 Prunus persica HOM05D001817 ORTHO05D001647 7.9e-07 57.8 86 38.4
Atru.chr7.2473 Acer truncatum HOM05D001817 ORTHO05D001647 1.0e-06 57.4 91 33.0
CDE06G0004 Ceratophyllum demersum HOM05D001817 ORTHO05D001647 1.0e-06 57.4 100 37.0
FAN20G0384 Fragaria x ananassa HOM05D000140 ORTHO05D000087 1.0e-06 57.4 105 34.3
Gorai.013G068000 Gossypium raimondii HOM05D001817 ORTHO05D001647 1.0e-06 57.4 85 35.3
Lj3g0023162 Lotus japonicus HOM05D001817 ORTHO05D001647 1.0e-06 57.4 91 38.5
Prupe.1G484100 Prunus persica HOM05D001817 ORTHO05D001647 1.0e-06 57.4 85 34.1
THA.LOC104818605 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 1.0e-06 57.4 100 31.0
TPR.G8 Trifolium pratense HOM05D001817 ORTHO05D001647 1.0e-06 57.4 86 37.2
VMungo0720G0118 Vigna mungo HOM05D001817 ORTHO05D001647 1.0e-06 57.4 88 36.4
CDE02G0050 Ceratophyllum demersum HOM05D001817 ORTHO05D001647 1.3e-06 57.0 100 35.0
Gohir.A13G061900 Gossypium hirsutum HOM05D001817 ORTHO05D001647 1.3e-06 57.0 85 34.1
Manes.02G218600 Manihot esculenta HOM05D001817 ORTHO05D001647 1.3e-06 57.0 121 33.9
Sabra09G0098900 Salix brachista HOM05D001817 ORTHO05D001647 1.3e-06 57.0 91 35.2
Sed0012505 Sechium edule HOM05D001817 ORTHO05D001647 1.3e-06 57.0 84 35.7
Sed0003760 Sechium edule HOM05D001817 ORTHO05D001647 1.7e-06 56.6 100 32.0
THA.LOC104818607 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 1.7e-06 56.6 100 30.0
THA.LOC104818611 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 1.7e-06 56.6 100 30.0
AL7G19800 Arabidopsis lyrata HOM05D001817 ORTHO05D001647 2.3e-06 56.2 84 38.1
BcaC09g51933 Brassica carinata HOM05D000025 ORTHO05D001647 2.3e-06 56.2 84 39.3
A01p06210 Brassica napus HOM05D001817 ORTHO05D001647 2.3e-06 56.2 84 35.7
A01p06720 Brassica napus HOM05D001817 ORTHO05D001647 2.3e-06 56.2 84 39.3
C01p07480 Brassica napus HOM05D001817 ORTHO05D001647 2.3e-06 56.2 84 39.3
BolC1t00731H Brassica oleracea HOM05D001817 ORTHO05D001647 2.3e-06 56.2 84 39.3
Carub.0007s0846 Capsella rubella HOM05D001817 ORTHO05D001647 2.3e-06 56.2 102 34.3
MELO3C033004.2 Cucumis melo HOM05D001817 ORTHO05D001647 2.3e-06 56.2 84 38.1
CsaV3_3G046170 Cucumis sativus L. HOM05D001817 ORTHO05D001647 2.3e-06 56.2 88 34.1
MD15G1128800 Malus domestica HOM05D001817 ORTHO05D001647 3.0e-06 55.8 85 36.5
Potri.004G167900 Populus trichocarpa HOM05D001817 ORTHO05D001647 3.0e-06 55.8 90 33.3
CsaV3_6G045660 Cucumis sativus L. HOM05D001817 ORTHO05D001647 3.9e-06 55.5 85 36.5
Lalb_Chr13g0294721 Lupinus albus HOM05D001817 ORTHO05D001647 5.1e-06 55.1 88 33.0
PSO541G0501 Papaver somniferum HOM05D001817 ORTHO05D001647 5.1e-06 55.1 88 35.2
PSO541G2996 Papaver somniferum HOM05D001817 ORTHO05D001647 5.1e-06 55.1 90 31.1
PSO541G3291 Papaver somniferum HOM05D001817 ORTHO05D001647 5.1e-06 55.1 88 35.2
AUR62029426 Chenopodium quinoa HOM05D001817 ORTHO05D001647 6.6e-06 54.7 99 29.3
MBI07_g02004_MAGBIO Magnolia biondii HOM05D001817 ORTHO05D001647 6.6e-06 54.7 100 37.0
Potri.009G129400 Populus trichocarpa HOM05D001817 ORTHO05D001647 6.6e-06 54.7 91 33.0
Thecc.02G154600 Theobroma cacao HOM05D001817 ORTHO05D001647 6.6e-06 54.7 85 35.3
VMungo0331G0739 Vigna mungo HOM05D001817 ORTHO05D001647 6.6e-06 54.7 91 36.3
BcaC09g51998 Brassica carinata HOM05D001817 ORTHO05D001647 8.7e-06 54.3 84 34.5
C01p06850 Brassica napus HOM05D001817 ORTHO05D001647 8.7e-06 54.3 84 34.5
Sopen10g024540 Solanum pennellii HOM05D001817 ORTHO05D001647 8.7e-06 54.3 100 32.0
VMungo0540G2413 Vigna mungo HOM05D001817 ORTHO05D001647 8.7e-06 54.3 90 37.8


User provided reference genes

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