Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0218100 Oryza sativa ssp. japonica HOM05D003953 ORTHO05D004618 3.1e-66 255.0 127 100.0
MBI04_g47172_MAGBIO Magnolia biondii HOM05D003953 ORTHO05D004618 1.3e-19 100.1 62 72.6
FvH4_7g06540 Fragaria vesca HOM05D003953 ORTHO05D004618 6.3e-19 97.8 63 69.8
FAN01G1905 Fragaria x ananassa HOM05D003953 ORTHO05D004618 6.3e-19 97.8 63 69.8
FAN03G1864 Fragaria x ananassa HOM05D003953 ORTHO05D004618 6.3e-19 97.8 63 69.8
FAN10G1677 Fragaria x ananassa HOM05D003953 ORTHO05D004618 6.3e-19 97.8 63 69.8
Os12g0194700 Oryza sativa ssp. japonica HOM05D003953 ORTHO05D004618 6.3e-19 97.8 62 77.4
RcHm_v2.0_Chr2g0128821 Rosa chinensis HOM05D003953 ORTHO05D004618 8.2e-19 97.4 63 69.8
TAR623G0256 Trochodendron aralioides HOM05D003953 ORTHO05D004618 1.8e-18 96.3 62 71.0
ATR1136G184 Amborella trichopoda HOM05D003953 ORTHO05D004618 2.4e-18 95.9 53 79.2
RcHm_v2.0_Chr1g0334971 Rosa chinensis HOM05D003953 ORTHO05D004618 3.1e-18 95.5 63 68.3
Glyma.19G045500 Glycine max HOM05D003953 ORTHO05D004618 4.1e-18 95.1 65 64.6
Prupe.2G047700 Prunus persica HOM05D003953 ORTHO05D004618 5.3e-18 94.7 88 58.0
Lj6g0017568 Lotus japonicus HOM05D003953 ORTHO05D004618 9.0e-18 94.0 62 67.7
Aqoxy128s009 Aquilegia oxysepala HOM05D003953 ORTHO05D004618 1.2e-17 93.6 66 69.7
FAN02G2926 Fragaria x ananassa HOM05D003953 ORTHO05D004618 1.5e-17 93.2 63 66.7
FAN14G2908 Fragaria x ananassa HOM05D003953 ORTHO05D004618 1.5e-17 93.2 63 65.1
Prupe.3G125300 Prunus persica HOM05D003953 ORTHO05D004618 1.5e-17 93.2 63 69.8
Lj1g0022776 Lotus japonicus HOM05D003953 ORTHO05D004618 2.0e-17 92.8 62 66.1
FAN05G4346 Fragaria x ananassa HOM05D003953 ORTHO05D004618 2.6e-17 92.4 61 67.2
MD10G1078400 Malus domestica HOM05D003953 ORTHO05D004618 2.6e-17 92.4 108 49.1
Nn2g13557 Nelumbo nucifera HOM05D003953 ORTHO05D004618 2.6e-17 92.4 61 67.2
TAR369G1135 Trochodendron aralioides HOM05D003953 ORTHO05D004618 3.4e-17 92.0 120 46.7
Zm00001eb169140 Zea mays HOM05D003953 ORTHO05D004618 3.4e-17 92.0 65 63.1
CDE05G3507 Ceratophyllum demersum HOM05D003953 ORTHO05D004618 4.5e-17 91.7 65 66.2
TPR.G3298 Trifolium pratense HOM05D003953 ORTHO05D004618 5.9e-17 91.3 61 63.9
TPR.G4479 Trifolium pratense HOM05D003953 ORTHO05D004618 1.3e-16 90.1 61 63.9
Eucgr.G01038 Eucalyptus grandis HOM05D003953 ORTHO05D004618 1.7e-16 89.7 67 62.7
CDE05G2370 Ceratophyllum demersum HOM05D003953 ORTHO05D004618 2.2e-16 89.4 62 66.1
FAN06G2211 Fragaria x ananassa HOM05D003953 ORTHO05D004618 2.2e-16 89.4 74 59.5
Psat3g190320 Pisum sativum HOM05D003953 ORTHO05D004618 2.2e-16 89.4 61 62.3
Oeu042438.1 Olea europaea HOM05D003953 ORTHO05D004618 2.9e-16 89.0 61 65.6
TWI79G0904 Tripterygium wilfordii HOM05D003953 ORTHO05D004618 3.8e-16 88.6 61 63.9
Lalb_Chr21g0317911 Lupinus albus HOM05D003953 ORTHO05D004618 5.0e-16 88.2 53 73.6
Phvul.008G020000 Phaseolus vulgaris HOM05D003953 ORTHO05D004618 5.0e-16 88.2 53 71.7
TWI75G1138 Tripterygium wilfordii HOM05D003953 ORTHO05D004618 5.0e-16 88.2 109 43.1
Ciclev10029631m.g Citrus clementina HOM05D003953 ORTHO05D004618 6.5e-16 87.8 109 45.9
GSVIVG01024830001 Vitis vinifera HOM05D003953 ORTHO05D004618 6.5e-16 87.8 62 62.9
Glyma.18G281100 Glycine max HOM05D003953 ORTHO05D004618 8.5e-16 87.4 63 65.1
CSS0034778 Camellia sinensis var. sinensis HOM05D003953 ORTHO05D004618 1.1e-15 87.0 107 44.9
Hma1.2p1_0274F.1_g110300 Hydrangea macrophylla HOM05D003953 ORTHO05D004618 1.1e-15 87.0 106 45.3
HPP92_011695 Vanilla planifolia HOM05D003953 ORTHO05D004618 1.4e-15 86.7 52 73.1
MSTRG.7467 Avicennia marina HOM05D003953 ORTHO05D004618 1.9e-15 86.3 106 44.3
CsaV3_1G013120 Cucumis sativus L. HOM05D003953 ORTHO05D004618 1.9e-15 86.3 61 62.3
CsaV3_1G035860 Cucumis sativus L. HOM05D003953 ORTHO05D004618 1.9e-15 86.3 58 65.5
Gohir.A03G047300 Gossypium hirsutum HOM05D003953 ORTHO05D004618 1.9e-15 86.3 64 60.9
vmacro03011 Vaccinium macrocarpon HOM05D003953 ORTHO05D004618 1.9e-15 86.3 96 49.0
arahy.Tifrunner.gnm1.ann1.X5K85D Arachis hypogaea HOM05D003953 ORTHO05D004618 2.5e-15 85.9 62 59.7
ClCG03G002440 Citrullus lanatus HOM05D003953 ORTHO05D004618 2.5e-15 85.9 65 64.6
Dinv06204 Davidia involucrata HOM05D003953 ORTHO05D004618 2.5e-15 85.9 95 47.4
Sed0025309 Sechium edule HOM05D003953 ORTHO05D004618 3.2e-15 85.5 61 63.9
Sopen06g001840 Solanum pennellii HOM05D003953 ORTHO05D004618 3.2e-15 85.5 61 62.3
arahy.Tifrunner.gnm1.ann1.4A8T0Q Arachis hypogaea HOM05D003953 ORTHO05D004618 4.2e-15 85.1 62 61.3
arahy.Tifrunner.gnm1.ann1.DA7VUD Arachis hypogaea HOM05D003953 ORTHO05D004618 4.2e-15 85.1 62 61.3
arahy.Tifrunner.gnm1.ann1.DBQJ9M Arachis hypogaea HOM05D003953 ORTHO05D004618 4.2e-15 85.1 62 61.3
Gorai.003G126400 Gossypium raimondii HOM05D003953 ORTHO05D004618 4.2e-15 85.1 64 59.4
Rhsim13G0075300 Rhododendron simsii HOM05D003953 ORTHO05D004618 4.2e-15 85.1 96 47.9
CANSAT54G2674 Cannabis sativa HOM05D003953 ORTHO05D004618 5.5e-15 84.7 51 68.6
Duzib168G1059 Durio zibethinus HOM05D003953 ORTHO05D004618 5.5e-15 84.7 109 42.2
Gohir.D03G119900 Gossypium hirsutum HOM05D003953 ORTHO05D004618 5.5e-15 84.7 64 57.8
SEGI_41348 Sequoiadendron giganteum HOM05D003953 ORTHO05D004618 5.5e-15 84.7 62 54.8
Duzib150G0459 Durio zibethinus HOM05D003953 ORTHO05D004618 7.2e-15 84.3 109 42.2
Medtr7g020830 Medicago truncatula HOM05D003953 ORTHO05D004618 7.2e-15 84.3 52 69.2
SalBow8G2167 Salvia bowleyana HOM05D003953 ORTHO05D004618 7.2e-15 84.3 61 60.7
SalBow8G3221 Salvia bowleyana HOM05D003953 ORTHO05D004618 7.2e-15 84.3 61 60.7
VMungo1383G2014 Vigna mungo HOM05D004418 ORTHO05D005222 7.2e-15 84.3 53 67.9
ClCG03G001080 Citrullus lanatus HOM05D003953 ORTHO05D004618 9.4e-15 84.0 61 63.9
Gorai.004G180400 Gossypium raimondii HOM05D003953 ORTHO05D004618 9.4e-15 84.0 64 59.4
Gorai.006G047400 Gossypium raimondii HOM05D003953 ORTHO05D004618 9.4e-15 84.0 64 59.4
Gorai.008G072300 Gossypium raimondii HOM05D003953 ORTHO05D004618 9.4e-15 84.0 64 59.4
Potri.001G246600 Populus trichocarpa HOM05D003953 ORTHO05D004618 9.4e-15 84.0 65 64.6
Hund03162 Selenicereus undatus HOM05D003953 ORTHO05D004618 9.4e-15 84.0 106 44.3
Atru.chr3.4044 Acer truncatum HOM05D003953 ORTHO05D004618 1.2e-14 83.6 63 60.3
Cc09_g02060 Coffea canephora HOM05D003953 ORTHO05D004618 1.2e-14 83.6 61 60.7
arahy.Tifrunner.gnm1.ann1.6EI814 Arachis hypogaea HOM05D003953 ORTHO05D004618 1.6e-14 83.2 62 59.7
CiPaw.13G084200 Carya illinoinensis HOM05D003953 ORTHO05D004618 1.6e-14 83.2 60 63.3
Gohir.D07G180600 Gossypium hirsutum HOM05D003953 ORTHO05D004618 1.6e-14 83.2 64 57.8
Gohir.D04G155200 Gossypium hirsutum HOM05D003953 ORTHO05D004618 2.1e-14 82.8 64 59.4
SGA_v2.0_scaffold44G16545 Striga asiatica HOM05D003953 ORTHO05D004618 2.1e-14 82.8 61 60.7
EL10Ac7g16096 Beta vulgaris HOM05D003953 ORTHO05D004618 2.7e-14 82.4 61 62.3
Migut.M00943 Erythranthe guttata HOM05D003953 ORTHO05D004618 2.7e-14 82.4 111 43.2
Nitab4.5_0002405g0070 Nicotiana tabacum HOM05D003953 ORTHO05D004618 2.7e-14 82.4 106 42.5
SalBow1G5086 Salvia bowleyana HOM05D003953 ORTHO05D004618 2.7e-14 82.4 61 59.0
PGSC0003DMG400020825 Solanum tuberosum HOM05D003953 ORTHO05D004618 2.7e-14 82.4 61 60.7
THA.LOC104800713 Tarenaya hassleriana HOM05D003953 ORTHO05D004618 2.7e-14 82.4 61 60.7
AUR62001716 Chenopodium quinoa HOM05D003953 ORTHO05D004618 3.6e-14 82.0 105 41.9
Gorai.011G189400 Gossypium raimondii HOM05D003953 ORTHO05D004618 3.6e-14 82.0 64 57.8
Haze_24228 Corylus avellana HOM05D003953 ORTHO05D004618 4.6e-14 81.6 55 63.6
Thecc.09G309300 Theobroma cacao HOM05D003953 ORTHO05D004618 4.6e-14 81.6 109 41.3
Cfa020872 Carpinus fangiana HOM05D003953 ORTHO05D004618 6.1e-14 81.3 55 63.6
Haze_19301 Corylus avellana HOM05D003953 ORTHO05D004618 6.1e-14 81.3 55 63.6
ECA248G2580 Erigeron canadensis HOM05D003953 ORTHO05D004618 6.1e-14 81.3 52 69.2
HanXRQChr09g0262301 Helianthus annuus HOM05D003953 ORTHO05D004618 6.1e-14 81.3 52 67.3
Hma1.2p1_0543F.1_g175312 Hydrangea macrophylla HOM05D003953 ORTHO05D004618 6.1e-14 81.3 106 42.5
Hma1.2p1_0543F.1_g175340 Hydrangea macrophylla HOM05D003953 ORTHO05D004618 6.1e-14 81.3 106 42.5
Lalb_Chr21g0317731 Lupinus albus HOM05D003953 ORTHO05D004618 6.1e-14 81.3 53 69.8
Sabra16G0149700 Salix brachista HOM05D003953 ORTHO05D004618 6.1e-14 81.3 65 61.5
Sed0019378 Sechium edule HOM05D003953 ORTHO05D004618 6.1e-14 81.3 107 41.1
DCAR_015642 Daucus carota HOM05D003953 ORTHO05D004618 7.9e-14 80.9 53 62.3
Lsat_1_v5_gn_5_168181 Lactuca sativa HOM05D003953 ORTHO05D004618 7.9e-14 80.9 52 67.3
Cfa011625 Carpinus fangiana HOM05D003953 ORTHO05D004618 1.0e-13 80.5 55 61.8
Gohir.D09G041350 Gossypium hirsutum HOM05D003953 ORTHO05D004618 1.0e-13 80.5 64 57.8
Sc12g0001080 Simmondsia chinensis HOM05D003953 ORTHO05D004618 1.0e-13 80.5 96 44.8
Gohir.A08G112100 Gossypium hirsutum HOM05D003953 ORTHO05D004618 1.4e-13 80.1 64 57.8
Nitab4.5_0000880g0090 Nicotiana tabacum HOM05D003953 ORTHO05D004618 1.4e-13 80.1 106 40.6
Gohir.A06G113000 Gossypium hirsutum HOM05D003953 ORTHO05D004618 1.8e-13 79.7 64 57.8
Gohir.A06G119302 Gossypium hirsutum HOM05D003953 ORTHO05D004618 1.8e-13 79.7 64 57.8
Gohir.A12G147900 Gossypium hirsutum HOM05D003953 ORTHO05D004618 1.8e-13 79.7 64 57.8
Gohir.D04G005500 Gossypium hirsutum HOM05D003953 ORTHO05D004618 1.8e-13 79.7 64 57.8
Gohir.D07G184100 Gossypium hirsutum HOM05D003953 ORTHO05D004618 1.8e-13 79.7 64 57.8
Oeu001049.1 Olea europaea HOM05D003953 ORTHO05D004618 1.8e-13 79.7 102 42.2
Gohir.D07G180800 Gossypium hirsutum HOM05D003953 ORTHO05D004618 2.3e-13 79.3 64 56.2
AUR62020054 Chenopodium quinoa HOM05D003953 ORTHO05D004618 3.0e-13 79.0 60 58.3
Gohir.D05G283601 Gossypium hirsutum HOM05D003953 ORTHO05D004618 3.0e-13 79.0 109 40.4
Gohir.D05G283900 Gossypium hirsutum HOM05D003953 ORTHO05D004618 3.0e-13 79.0 109 40.4
Gorai.009G298400 Gossypium raimondii HOM05D003953 ORTHO05D004618 3.0e-13 79.0 110 40.0
Manes.01G166500 Manihot esculenta HOM05D003953 ORTHO05D004618 3.0e-13 79.0 51 70.6
Aa31LG5G6920 Aethionema arabicum HOM05D003953 ORTHO05D004618 3.9e-13 78.6 65 56.9
PGSC0003DMG400013346 Solanum tuberosum HOM05D003953 ORTHO05D004618 3.9e-13 78.6 61 55.7
Ah.13g070310 Amaranthus hybridus HOM05D003953 ORTHO05D004618 5.1e-13 78.2 107 38.3
Gohir.D09G041300 Gossypium hirsutum HOM05D003953 ORTHO05D004618 6.7e-13 77.8 64 56.2
Cpa.g.sc112.95 Carica papaya HOM05D003953 ORTHO05D004618 8.8e-13 77.4 63 55.6
unitig_92.g28151 Utricularia gibba HOM05D003953 ORTHO05D004618 1.1e-12 77.0 52 63.5
AagrBONN_evm.TU.Sc2ySwM_117.3970 Anthoceros agrestis HOM05D003953 ORTHO05D004618 1.5e-12 76.6 52 61.5
Eucgr.G01035 Eucalyptus grandis HOM05D003953 ORTHO05D004618 1.5e-12 76.6 67 56.7
Peaxi162Scf00123g01014 Petunia axillaris HOM05D003953 ORTHO05D004618 1.5e-12 76.6 53 64.2
PGR102G1512 Punica granatum HOM05D003953 ORTHO05D004618 1.5e-12 76.6 51 64.7
AagrBONN_evm.TU.Sc2ySwM_295.3 Anthoceros agrestis HOM05D003953 ORTHO05D004618 1.9e-12 76.3 52 63.5
COL.COLO4_19069 Corchorus olitorius HOM05D003953 ORTHO05D004618 1.9e-12 76.3 73 47.9
Sopen11g006990 Solanum pennellii HOM05D003953 ORTHO05D004618 1.9e-12 76.3 61 52.5
AagrBONN_evm.TU.Sc2ySwM_26.4 Anthoceros agrestis HOM05D003953 ORTHO05D004618 4.3e-12 75.1 52 61.5
AagrBONN_evm.TU.Sc2ySwM_287.2 Anthoceros agrestis HOM05D003953 ORTHO05D004618 4.3e-12 75.1 52 61.5
AagrBONN_evm.TU.Sc2ySwM_368.2434 Anthoceros agrestis HOM05D003953 ORTHO05D004618 4.3e-12 75.1 52 61.5
Gohir.A06G083400 Gossypium hirsutum HOM05D003953 ORTHO05D004618 5.7e-12 74.7 51 64.7
Gohir.D11G224100 Gossypium hirsutum HOM05D003953 ORTHO05D004618 5.7e-12 74.7 51 64.7
CAN.G1186.33 Capsicum annuum HOM05D003953 ORTHO05D004618 1.7e-11 73.2 106 38.7
Hund04903 Selenicereus undatus HOM05D003953 ORTHO05D004618 1.7e-11 73.2 101 40.6
Solyc11g012195.1 Solanum lycopersicum HOM05D003953 ORTHO05D004618 1.7e-11 73.2 61 49.2
Phvul.004G063100 Phaseolus vulgaris HOM05D003953 ORTHO05D004618 2.2e-11 72.8 52 57.7
MCO07G039 Micromonas commoda HOM05D003953 ORTHO05D004618 2.8e-11 72.4 66 54.5
Dinv34318 Davidia involucrata HOM05D003953 ORTHO05D004618 3.7e-11 72.0 78 48.7
Nitab4.5_0002142g0080 Nicotiana tabacum HOM05D003953 ORTHO05D004618 3.7e-11 72.0 61 52.5
PSO384G4465 Papaver somniferum HOM05D003953 ORTHO05D004618 3.7e-11 72.0 62 53.2
FAN09G1296 Fragaria x ananassa HOM05D003953 ORTHO05D004618 6.3e-11 71.2 117 36.8
Mapoly0064s0065 Marchantia polymorpha HOM05D003953 ORTHO05D004618 6.3e-11 71.2 95 38.9
SMO228G0103 Selaginella moellendorffii HOM05D003953 ORTHO05D004618 8.2e-11 70.9 52 55.8
Carub.0004s1059 Capsella rubella HOM05D003953 ORTHO05D004618 2.4e-10 69.3 53 56.6
Pp3c3_11180 Physcomitrium patens HOM05D003953 ORTHO05D004618 2.4e-10 69.3 63 47.6
AT2G29540 Arabidopsis thaliana HOM05D003953 ORTHO05D004618 3.1e-10 68.9 53 56.6
AL4G24250 Arabidopsis lyrata HOM05D003953 ORTHO05D004618 4.1e-10 68.6 52 57.7
Thhalv10017434m.g Eutrema salsugineum HOM05D003953 ORTHO05D004618 6.9e-10 67.8 52 57.7
Sp4g12270 Schrenkiella parvula HOM05D003953 ORTHO05D004618 9.1e-10 67.4 53 56.6
BcaC02g08078 Brassica carinata HOM05D003953 ORTHO05D004618 1.2e-09 67.0 53 54.7
C04p58680 Brassica napus HOM05D003953 ORTHO05D004618 1.2e-09 67.0 53 54.7
BcaB02g10260 Brassica carinata HOM05D003953 ORTHO05D004618 1.5e-09 66.6 51 58.8
A05p15860 Brassica napus HOM05D003953 ORTHO05D004618 1.5e-09 66.6 51 58.8
C04p21300 Brassica napus HOM05D003953 ORTHO05D004618 1.5e-09 66.6 51 58.8
BolC4t23659H Brassica oleracea HOM05D003953 ORTHO05D004618 1.5e-09 66.6 51 58.8
PSO339G2392 Papaver somniferum HOM05D003953 ORTHO05D004618 2.0e-09 66.2 56 55.4
CARHR122880 Cardamine hirsuta HOM05D003953 ORTHO05D004618 3.4e-09 65.5 63 50.8
A04p22530 Brassica napus HOM05D003953 ORTHO05D004618 5.9e-09 64.7 53 54.7
BraA04t17798Z Brassica rapa HOM05D003953 ORTHO05D004618 5.9e-09 64.7 53 54.7
Mapoly0079s0034 Marchantia polymorpha HOM05D003953 ORTHO05D004618 8.5e-08 60.8 99 33.3
Aqoxy1G00773 Aquilegia oxysepala HOM05D003953 ORTHO05D004618 4.2e-07 58.5 35 71.4


User provided reference genes

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