Gene: AT2G29540
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT2G29540
- Transcript Identifier AT2G29540.2
- Gene Type Coding gene
- Location Chr2 : 12642727-12643828 : positive
Gene Family Information
- ID HOM05D003953
- #Genes/#Species 176/94
- Phylogenetic origin
- ID ORTHO05D004618
- #Genes/#Species 175/94
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT2G29540.2
- symbol RPC14
- Alias ATRPAC14,ATRPC14,RNApolymerase 14 kDa subunit
- uniprot Q42483
Descriptions
- Description RNApolymerase 14 kDa subunit
- Computational description RNApolymerase 14 kDa subunit (RPC14); FUNCTIONS IN: DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding; INVOLVED IN: tRNA transcription; LOCATED IN: DNA-directed RNA polymerase III complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site (InterPro:IPR008193), DNA-directed RNA polymerase, dimerisation (InterPro:IPR011261), DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase, RBP11-like (TAIR:AT3G52090.1); Has 889 Blast hits to 889 proteins in 232 species: Archae - 23; Bacteria - 0; Metazoa - 328; Fungi - 301; Plants - 115; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).
- Computational description RNApolymerase 14 kDa subunit (RPC14); FUNCTIONS IN: DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding; INVOLVED IN: tRNA transcription; LOCATED IN: DNA-directed RNA polymerase III complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site (InterPro:IPR008193), DNA-directed RNA polymerase, dimerisation (InterPro:IPR011261), DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase, RBP11-like (TAIR:AT3G52090.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006351 | IEA | Gene Ontology | transcription, DNA-templated | |
| GO:0006351 | IEA | InterPro | transcription, DNA-templated | |
| GO:0009304 | TAS | Gene Ontology | tRNA transcription |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | Gene Ontology | DNA binding | |
| GO:0046983 | IEA | Gene Ontology | protein dimerization activity | |
| GO:0046983 | IEA | InterPro | protein dimerization activity | |
| GO:0005515 | IPI | Gene Ontology | protein binding | 1 |
| GO:0003899 | IEA | GOA Database | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0003899 | IBA | Gene Ontology | DNA-directed 5'-3' RNA polymerase activity | 2 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0005666 | IDA ISS, IBA | Gene Ontology | RNA polymerase III complex | 2 3 |
| GO:0005736 | IBA | Gene Ontology | RNA polymerase I complex | 2 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 15.1.6.9 | RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I-V shared regulatory components.subunit 11 |