Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0217300 Oryza sativa ssp. japonica HOM05D004929 ORTHO05D006492 6.1e-205 717.2 354 100.0
Zm00001eb025800 Zea mays HOM05D004929 ORTHO05D006492 4.9e-154 548.1 340 77.6
Thecc.04G019500 Theobroma cacao HOM05D004929 ORTHO05D006492 1.2e-147 526.9 340 74.7
Actinidia05982 Actinidia chinensis HOM05D004929 ORTHO05D006492 3.4e-147 525.4 343 73.5
MELO3C021592.2 Cucumis melo HOM05D004929 ORTHO05D006492 3.4e-147 525.4 340 74.4
FAN09G2944 Fragaria x ananassa HOM05D004929 ORTHO05D006492 4.4e-147 525.0 340 74.7
FvH4_6g51800 Fragaria vesca HOM05D004929 ORTHO05D006492 5.8e-147 524.6 340 74.7
ClCG09G019380 Citrullus lanatus HOM05D004929 ORTHO05D006492 7.5e-147 524.2 340 74.4
Ciclev10015593m.g Citrus clementina HOM05D004929 ORTHO05D006492 9.9e-147 523.9 340 73.5
CsaV3_5G027030 Cucumis sativus L. HOM05D004929 ORTHO05D006492 9.9e-147 523.9 340 74.4
FAN14G2766 Fragaria x ananassa HOM05D004929 ORTHO05D006492 2.2e-146 522.7 340 74.7
Prupe.3G293800 Prunus persica HOM05D004929 ORTHO05D006492 3.7e-146 521.9 340 74.4
RcHm_v2.0_Chr2g0173281 Rosa chinensis HOM05D004929 ORTHO05D006492 4.9e-146 521.5 340 75.0
Nn8g40033 Nelumbo nucifera HOM05D004929 ORTHO05D006492 6.4e-146 521.2 338 74.0
vmacro05876 Vaccinium macrocarpon HOM05D004929 ORTHO05D006492 6.4e-146 521.2 337 73.6
MD09G1023000 Malus domestica HOM05D004929 ORTHO05D006492 8.3e-146 520.8 340 73.5
Rhsim10G0014700 Rhododendron simsii HOM05D004929 ORTHO05D006492 1.9e-145 519.6 340 74.1
HPP92_015407 Vanilla planifolia HOM05D004929 ORTHO05D006492 2.4e-145 519.2 340 74.1
Aqoxy5G00914 Aquilegia oxysepala HOM05D004929 ORTHO05D006492 3.2e-145 518.8 341 73.0
FAN05G4087 Fragaria x ananassa HOM05D004929 ORTHO05D006492 3.2e-145 518.8 340 74.1
PGR142G3088 Punica granatum HOM05D004929 ORTHO05D006492 3.2e-145 518.8 344 72.1
QL02p074005 Quercus lobata HOM05D004929 ORTHO05D006492 4.1e-145 518.5 340 74.1
MD17G1022300 Malus domestica HOM05D004929 ORTHO05D006492 5.4e-145 518.1 340 74.4
Haze_14758 Corylus avellana HOM05D004929 ORTHO05D006492 7.1e-145 517.7 340 73.8
Manes.15G151900 Manihot esculenta HOM05D004929 ORTHO05D006492 7.1e-145 517.7 340 73.8
Cfa007339 Carpinus fangiana HOM05D004929 ORTHO05D006492 9.2e-145 517.3 340 73.2
TAR633G2310 Trochodendron aralioides HOM05D004929 ORTHO05D006492 1.2e-144 516.9 340 73.8
CiPaw.03G045500 Carya illinoinensis HOM05D004929 ORTHO05D006492 1.6e-144 516.5 344 73.0
Potri.001G343400 Populus trichocarpa HOM05D004929 ORTHO05D006492 1.6e-144 516.5 342 71.9
Duzib147G0164 Durio zibethinus HOM05D004929 ORTHO05D006492 4.6e-144 515.0 340 73.2
Lju41A43T26 Lonicera japonica HOM05D004929 ORTHO05D006492 4.6e-144 515.0 340 72.6
Dinv25726 Davidia involucrata HOM05D004929 ORTHO05D006492 6.0e-144 514.6 337 73.6
Sabra16G0222700 Salix brachista HOM05D004929 ORTHO05D006492 1.0e-143 513.8 342 71.3
FAN02G0047 Fragaria x ananassa HOM05D004929 ORTHO05D006492 1.3e-143 513.5 352 72.2
Sed0020215 Sechium edule HOM05D004929 ORTHO05D006492 1.3e-143 513.5 340 73.5
Thhalv10020980m.g Eutrema salsugineum HOM05D004929 ORTHO05D006492 1.7e-143 513.1 340 71.5
Aa31LG5G10780 Aethionema arabicum HOM05D004929 ORTHO05D006492 2.3e-143 512.7 340 72.6
Nitab4.5_0001860g0030 Nicotiana tabacum HOM05D004929 ORTHO05D006492 3.0e-143 512.3 338 72.5
THA.LOC104821096 Tarenaya hassleriana HOM05D004929 ORTHO05D006492 3.9e-143 511.9 337 72.1
TWI56G0780 Tripterygium wilfordii HOM05D004929 ORTHO05D006492 3.9e-143 511.9 340 72.4
Peaxi162Scf03028g00012 Petunia axillaris HOM05D004929 ORTHO05D006492 6.6e-143 511.1 338 72.5
GSVIVG01032385001 Vitis vinifera HOM05D004929 ORTHO05D006492 6.6e-143 511.1 340 72.1
Ah.03g137000 Amaranthus hybridus HOM05D004929 ORTHO05D006492 1.1e-142 510.4 338 71.9
CiPaw.04G029600 Carya illinoinensis HOM05D004929 ORTHO05D006492 1.5e-142 510.0 344 71.8
Cc09_g04510 Coffea canephora HOM05D004929 ORTHO05D006492 1.5e-142 510.0 340 72.4
SalBow7G3047 Salvia bowleyana HOM05D004929 ORTHO05D006492 1.5e-142 510.0 340 72.1
Migut.K01411 Erythranthe guttata HOM05D004929 ORTHO05D006492 2.5e-142 509.2 338 71.6
Gohir.D09G029800 Gossypium hirsutum HOM05D004929 ORTHO05D006492 2.5e-142 509.2 340 72.4
Gorai.006G034800 Gossypium raimondii HOM05D004929 ORTHO05D006492 2.5e-142 509.2 340 72.6
Peaxi162Scf00129g01650 Petunia axillaris HOM05D004929 ORTHO05D006492 2.5e-142 509.2 338 72.2
EL10Ac6g14097 Beta vulgaris HOM05D004929 ORTHO05D006492 3.3e-142 508.8 338 72.2
Aqoxy4G03095 Aquilegia oxysepala HOM05D004929 ORTHO05D006492 4.3e-142 508.4 338 72.2
Hund23289 Selenicereus undatus HOM05D004929 ORTHO05D006492 4.3e-142 508.4 340 72.1
AL3G10510 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 7.3e-142 507.7 344 70.9
Gohir.A09G030100 Gossypium hirsutum HOM05D004929 ORTHO05D006492 7.3e-142 507.7 340 71.8
Sed0027438 Sechium edule HOM05D004929 ORTHO05D006492 9.5e-142 507.3 340 72.6
TWI12G0632 Tripterygium wilfordii HOM05D004929 ORTHO05D006492 9.5e-142 507.3 340 71.5
PSO699G0033 Papaver somniferum HOM05D004929 ORTHO05D006492 1.2e-141 506.9 345 71.3
PGSC0003DMG400012608 Solanum tuberosum HOM05D004929 ORTHO05D006492 1.2e-141 506.9 344 71.5
AT3G01640 Arabidopsis thaliana HOM05D004929 ORTHO05D006492 2.1e-141 506.1 340 71.5
C03p39500 Brassica napus HOM05D004929 ORTHO05D006492 2.1e-141 506.1 340 70.3
PSO384G0906 Papaver somniferum HOM05D004929 ORTHO05D006492 2.8e-141 505.8 345 71.6
Sp3g00410 Schrenkiella parvula HOM05D004929 ORTHO05D006492 3.6e-141 505.4 340 70.9
Solyc02g093440.4 Solanum lycopersicum HOM05D004929 ORTHO05D006492 4.7e-141 505.0 344 71.2
Sopen02g038230 Solanum pennellii HOM05D004929 ORTHO05D006492 4.7e-141 505.0 344 71.2
arahy.Tifrunner.gnm1.ann1.FEY4ZS Arachis hypogaea HOM05D004929 ORTHO05D006492 6.2e-141 504.6 340 72.1
BolC3t16218H Brassica oleracea HOM05D004929 ORTHO05D006492 6.2e-141 504.6 340 69.7
arahy.Tifrunner.gnm1.ann1.NF5K9F Arachis hypogaea HOM05D004929 ORTHO05D006492 8.1e-141 504.2 340 72.1
MSTRG.3138 Avicennia marina HOM05D004929 ORTHO05D006492 1.1e-140 503.8 340 71.8
Peaxi162Scf00080g01316 Petunia axillaris HOM05D004929 ORTHO05D005557 1.1e-140 503.8 340 72.1
BcaC01g04530 Brassica carinata HOM05D004929 ORTHO05D006492 2.4e-140 502.7 340 69.7
BraA03t12414Z Brassica rapa HOM05D004929 ORTHO05D006492 4.0e-140 501.9 340 69.7
CAN.G473.20 Capsicum annuum HOM05D004929 ORTHO05D006492 4.0e-140 501.9 338 71.3
Carub.0006s1265 Capsella rubella HOM05D004929 ORTHO05D006492 1.2e-139 500.4 341 71.0
Phvul.004G004700 Phaseolus vulgaris HOM05D004929 ORTHO05D006492 1.2e-139 500.4 339 71.7
AL6G25200 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 1.5e-139 500.0 341 71.0
A03p32440 Brassica napus HOM05D004929 ORTHO05D006492 1.5e-139 500.0 340 69.4
MBI05_g22077_MAGBIO Magnolia biondii HOM05D004929 ORTHO05D006492 2.0e-139 499.6 338 72.2
Thhalv10013912m.g Eutrema salsugineum HOM05D004929 ORTHO05D006492 2.6e-139 499.2 341 70.1
CANSAT64G1903 Cannabis sativa HOM05D004929 ORTHO05D006492 3.4e-139 498.8 340 71.5
Cpa.g.sc108.76 Carica papaya HOM05D003450 ORTHO05D004150 3.4e-139 498.8 337 70.3
Glyma.05G002500 Glycine max HOM05D004929 ORTHO05D006492 3.4e-139 498.8 339 70.2
AT5G14470 Arabidopsis thaliana HOM05D004929 ORTHO05D006492 7.6e-139 497.7 341 70.4
CARHR075280 Cardamine hirsuta HOM05D004929 ORTHO05D006492 2.2e-138 496.1 344 68.6
VMungo0464G1388 Vigna mungo HOM05D004929 ORTHO05D006492 3.8e-138 495.4 342 70.2
BraA10t44472Z Brassica rapa HOM05D004929 ORTHO05D006492 4.9e-138 495.0 341 69.8
Carub.0003s0042 Capsella rubella HOM05D004929 ORTHO05D006492 8.4e-138 494.2 340 69.7
Lsat_1_v5_gn_0_18301 Lactuca sativa HOM05D004929 ORTHO05D006492 8.4e-138 494.2 340 70.9
CARHR198840 Cardamine hirsuta HOM05D004929 ORTHO05D006492 1.4e-137 493.4 341 70.4
DCAR_021732 Daucus carota HOM05D004929 ORTHO05D006492 1.4e-137 493.4 326 74.2
AUR62008872 Chenopodium quinoa HOM05D004929 ORTHO05D006492 1.9e-137 493.0 340 70.3
ATR0827G043 Amborella trichopoda HOM05D004929 ORTHO05D006492 2.7e-136 489.2 360 67.8
HanXRQChr17g0548641 Helianthus annuus HOM05D004929 ORTHO05D006492 2.7e-136 489.2 340 71.8
BcaB08g36997 Brassica carinata HOM05D004929 ORTHO05D006492 4.6e-136 488.4 341 69.5
Medtr6g004430 Medicago truncatula HOM05D004929 ORTHO05D006492 4.6e-136 488.4 340 70.9
ECA246G1179 Erigeron canadensis HOM05D004929 ORTHO05D006492 6.0e-136 488.0 340 70.9
TPR.G31950 Trifolium pratense HOM05D004929 ORTHO05D006492 1.3e-135 486.9 340 70.6
AUR62031837 Chenopodium quinoa HOM05D004929 ORTHO05D006492 3.0e-135 485.7 380 64.2
Lalb_Chr06g0176621 Lupinus albus HOM05D004929 ORTHO05D006492 5.1e-135 485.0 339 68.4
HanXRQChr17g0548651 Helianthus annuus HOM05D004929 ORTHO05D006492 1.1e-134 483.8 337 70.6
Ca_04143_v3 Cicer arietinum L. HOM05D004929 ORTHO05D006492 2.5e-134 482.6 344 69.8
arahy.Tifrunner.gnm1.ann1.BJ3QP1 Arachis hypogaea HOM05D004929 ORTHO05D006492 9.6e-134 480.7 315 74.3
Lj2g0024676 Lotus japonicus HOM05D004929 ORTHO05D006492 5.2e-132 474.9 340 68.5
Duzib264G0638 Durio zibethinus HOM05D004929 ORTHO05D006492 1.7e-130 469.9 374 64.7
SHI00354 Sapria himalayana HOM05D004929 ORTHO05D006492 1.6e-128 463.4 339 66.7
BcaC04g19032 Brassica carinata HOM05D004929 ORTHO05D006492 6.6e-127 458.0 341 67.4
BcaB08g36995 Brassica carinata HOM05D004929 ORTHO05D006492 8.1e-125 451.1 347 66.3
SMO145G0043 Selaginella moellendorffii HOM05D004929 ORTHO05D006492 2.4e-124 449.5 336 65.5
Oeu018151.1 Olea europaea HOM05D004929 ORTHO05D006492 1.2e-123 447.2 338 66.0
Eucgr.I01731 Eucalyptus grandis HOM05D004929 ORTHO05D006492 9.6e-118 427.6 276 73.6
COL.COLO4_29172 Corchorus olitorius HOM05D004929 ORTHO05D006492 1.3e-117 427.2 338 63.6
SGA_v2.0_scaffold30G12409 Striga asiatica HOM05D004929 ORTHO05D006492 2.1e-117 426.4 270 75.6
Dinv33427 Davidia involucrata HOM05D004929 ORTHO05D006492 2.2e-114 416.4 270 73.7
HPP92_026990 Vanilla planifolia HOM05D004929 ORTHO05D006492 1.9e-113 413.3 260 76.9
Sc03g0007290 Simmondsia chinensis HOM05D004929 ORTHO05D006492 4.6e-112 408.7 272 71.7
AagrBONN_evm.TU.Sc2ySwM_228.449 Anthoceros agrestis HOM05D000718 ORTHO05D002712 6.0e-112 408.3 293 67.2
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 1.3e-111 407.1 271 73.4
A10p24090 Brassica napus HOM05D004929 ORTHO05D006492 5.1e-111 405.2 340 59.1
Mapoly0023s0058 Marchantia polymorpha HOM05D004929 ORTHO05D006492 2.2e-106 389.8 348 58.3
Psat1g053480 Pisum sativum HOM05D004929 ORTHO05D006492 2.3e-103 379.8 260 71.2
CBR_g3618 Chara braunii HOM05D004929 ORTHO05D006492 4.8e-101 372.1 338 56.2
Nitab4.5_0006683g0060 Nicotiana tabacum HOM05D004929 ORTHO05D006492 6.3e-101 371.7 338 57.1
ATR0681G379 Amborella trichopoda HOM05D004929 ORTHO05D006492 1.2e-99 367.5 244 73.8
Atru.chr6.2430 Acer truncatum HOM05D004929 ORTHO05D006492 1.9e-97 360.1 227 75.8
SGA_v2.0_scaffold47G17516 Striga asiatica HOM05D004929 ORTHO05D006492 4.2e-97 359.0 332 57.5
Pp3c22_9380 Physcomitrium patens HOM05D004929 ORTHO05D006492 1.6e-96 357.1 268 65.3
SHI25478 Sapria himalayana HOM05D004929 ORTHO05D006492 1.4e-92 344.0 276 63.0
Cre02.g107600 Chlamydomonas reinhardtii HOM05D004929 ORTHO05D006492 1.7e-90 337.0 364 51.1
PRCOL_00005101 Prasinoderma coloniale HOM05D004929 ORTHO05D006492 5.9e-83 312.0 341 51.9
C09p62710 Brassica napus HOM05D004929 ORTHO05D006492 2.9e-82 309.7 340 49.7
BolC9t59108H Brassica oleracea HOM05D004929 ORTHO05D006492 2.9e-82 309.7 349 49.6
CDE07G0337 Ceratophyllum demersum HOM05D004929 ORTHO05D006492 1.9e-81 307.0 206 70.9
MCO09G795 Micromonas commoda HOM05D004929 ORTHO05D006492 4.2e-81 305.8 348 49.7
Nitab4.5_0000040g0670 Nicotiana tabacum HOM05D004929 ORTHO05D006492 3.5e-75 286.2 338 48.5
Oeu033729.3 Olea europaea HOM05D004929 ORTHO05D006492 4.1e-68 262.7 208 65.9
Nitab4.5_0001550g0030 Nicotiana tabacum HOM05D004929 ORTHO05D006492 1.5e-65 254.2 223 59.6
BcaB08g36982 Brassica carinata HOM05D004929 ORTHO05D006492 8.6e-58 228.4 157 68.2
MBI05_g01825_MAGBIO Magnolia biondii HOM05D004929 ORTHO05D006492 2.1e-56 223.8 217 54.8
BolC9t59344H Brassica oleracea HOM05D004929 ORTHO05D006492 3.3e-49 199.9 186 57.0
MSTRG.3285 Avicennia marina HOM05D004929 ORTHO05D006492 9.5e-49 198.4 131 71.8
Atru.chr6.2429 Acer truncatum HOM05D004929 ORTHO05D006492 2.5e-41 173.7 114 71.9
CDE07G1161 Ceratophyllum demersum HOM05D004929 ORTHO05D043891 7.5e-30 135.6 103 65.0
BcaNung06761 Brassica carinata HOM05D004929 ORTHO05D006492 8.1e-24 115.5 70 74.3
A10p26090 Brassica napus HOM05D004929 ORTHO05D006492 8.4e-21 105.5 178 39.9
MD17G1022500 Malus domestica HOM05D004929 ORTHO05D006492 1.7e-18 97.8 64 73.4
Sopen02g038030 Solanum pennellii HOM05D004929 ORTHO05D006492 2.4e-15 87.4 62 66.1
Sp6g29550 Schrenkiella parvula HOM05D004929 ORTHO05D043891 9.3e-12 75.5 56 60.7
arahy.Tifrunner.gnm1.ann1.6CI6DX Arachis hypogaea HOM05D004929 ORTHO05D031499 1.6e-11 74.7 44 75.0
arahy.Tifrunner.gnm1.ann1.XQCE19 Arachis hypogaea HOM05D004929 ORTHO05D031499 1.3e-10 71.6 43 72.1


User provided reference genes

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