Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0194800 Oryza sativa ssp. japonica HOM05D003831 ORTHO05D004440 6.1e-38 160.2 75 100.0
Os12g0180400 Oryza sativa ssp. japonica HOM05D003831 ORTHO05D004440 2.8e-35 151.4 70 100.0
Duzib268G1541 Durio zibethinus HOM05D003831 ORTHO05D004440 2.4e-34 148.3 71 95.8
Gohir.A03G138000 Gossypium hirsutum HOM05D003831 ORTHO05D004440 2.4e-34 148.3 71 95.8
Gohir.A12G143800 Gossypium hirsutum HOM05D003831 ORTHO05D004440 2.4e-34 148.3 71 95.8
Gohir.D02G161000 Gossypium hirsutum HOM05D003831 ORTHO05D004440 2.4e-34 148.3 71 95.8
Gohir.D12G148500 Gossypium hirsutum HOM05D003831 ORTHO05D004440 2.4e-34 148.3 71 95.8
Gorai.005G181100 Gossypium raimondii HOM05D003831 ORTHO05D004440 2.4e-34 148.3 71 95.8
Gorai.008G159800 Gossypium raimondii HOM05D003831 ORTHO05D004440 2.4e-34 148.3 71 95.8
Nn2g14078 Nelumbo nucifera HOM05D003831 ORTHO05D004440 2.4e-34 148.3 71 95.8
Nn4g22720 Nelumbo nucifera HOM05D003831 ORTHO05D004440 2.4e-34 148.3 71 95.8
Thecc.09G367000 Theobroma cacao HOM05D003831 ORTHO05D004440 2.4e-34 148.3 71 95.8
GSVIVG01013776001 Vitis vinifera HOM05D003831 ORTHO05D004440 2.4e-34 148.3 71 95.8
ATR0661G047 Amborella trichopoda HOM05D003831 ORTHO05D004440 3.1e-34 147.9 71 95.8
ATR0763G101 Amborella trichopoda HOM05D003831 ORTHO05D004440 3.1e-34 147.9 71 95.8
Hma1.2p1_0052F.1_g030070 Hydrangea macrophylla HOM05D003831 ORTHO05D004440 5.3e-34 147.1 71 95.8
Hma1.2p1_0226F.1_g095410 Hydrangea macrophylla HOM05D003831 ORTHO05D004440 5.3e-34 147.1 71 95.8
PSO063G5975 Papaver somniferum HOM05D003831 ORTHO05D004440 9.1e-34 146.4 71 93.0
PSO832G3076 Papaver somniferum HOM05D003831 ORTHO05D004440 9.1e-34 146.4 71 93.0
Prupe.1G250300 Prunus persica HOM05D003831 ORTHO05D004440 9.1e-34 146.4 71 94.4
CSS0003899 Camellia sinensis var. sinensis HOM05D003831 ORTHO05D004440 1.2e-33 146.0 69 97.1
AUR62001616 Chenopodium quinoa HOM05D003831 ORTHO05D004440 1.2e-33 146.0 71 93.0
Cc05_g00640 Coffea canephora HOM05D003831 ORTHO05D004440 1.2e-33 146.0 69 97.1
HanXRQChr04g0108041 Helianthus annuus HOM05D003831 ORTHO05D004440 1.2e-33 146.0 71 93.0
Lsat_1_v5_gn_8_89360 Lactuca sativa HOM05D003831 ORTHO05D004440 1.2e-33 146.0 71 93.0
Potri.003G102900 Populus trichocarpa HOM05D003831 ORTHO05D004440 1.2e-33 146.0 69 97.1
Potri.006G136300 Populus trichocarpa HOM05D003831 ORTHO05D004440 1.2e-33 146.0 69 97.1
AagrBONN_evm.TU.Sc2ySwM_368.1682 Anthoceros agrestis HOM05D003831 ORTHO05D004440 1.5e-33 145.6 72 91.7
Dinv12651 Davidia involucrata HOM05D003831 ORTHO05D004440 1.5e-33 145.6 69 97.1
Dinv19174 Davidia involucrata HOM05D003831 ORTHO05D004440 1.5e-33 145.6 69 97.1
HanXRQChr14g0445611 Helianthus annuus HOM05D003831 ORTHO05D004440 1.5e-33 145.6 70 94.3
Eucgr.C02278 Eucalyptus grandis HOM05D003831 ORTHO05D004440 2.0e-33 145.2 70 95.7
FvH4_4g32930 Fragaria vesca HOM05D003831 ORTHO05D004440 2.0e-33 145.2 71 93.0
FAN09G4060 Fragaria x ananassa HOM05D003831 ORTHO05D004440 2.0e-33 145.2 71 93.0
FAN12G2747 Fragaria x ananassa HOM05D003831 ORTHO05D004440 2.0e-33 145.2 71 93.0
FAN17G2711 Fragaria x ananassa HOM05D003831 ORTHO05D004440 2.0e-33 145.2 71 93.0
FAN22G0891 Fragaria x ananassa HOM05D003831 ORTHO05D004440 2.0e-33 145.2 71 93.0
MD05G1050000 Malus domestica HOM05D003831 ORTHO05D004440 2.0e-33 145.2 71 93.0
MD10G1057300 Malus domestica HOM05D003831 ORTHO05D004440 2.0e-33 145.2 71 93.0
QL03p062311 Quercus lobata HOM05D003831 ORTHO05D004440 2.0e-33 145.2 71 91.5
QL03p062353 Quercus lobata HOM05D003831 ORTHO05D004440 2.0e-33 145.2 71 91.5
THA.LOC104809603 Tarenaya hassleriana HOM05D003831 ORTHO05D004440 2.0e-33 145.2 71 93.0
TWI18G0137 Tripterygium wilfordii HOM05D003831 ORTHO05D004440 2.0e-33 145.2 71 93.0
Zm00001eb366170 Zea mays HOM05D003831 ORTHO05D004440 2.0e-33 145.2 71 94.4
Zm00001eb408310 Zea mays HOM05D003831 ORTHO05D004440 2.0e-33 145.2 71 94.4
vmacro14731 Vaccinium macrocarpon HOM05D003831 ORTHO05D004440 2.6e-33 144.8 71 93.0
Haze_22255 Corylus avellana HOM05D003831 ORTHO05D004440 3.4e-33 144.4 71 91.5
Lalb_Chr05g0228561 Lupinus albus HOM05D003831 ORTHO05D004440 3.4e-33 144.4 69 95.7
PGR102G1072 Punica granatum HOM05D003831 ORTHO05D004440 3.4e-33 144.4 71 93.0
PGR119G1391 Punica granatum HOM05D003831 ORTHO05D004440 3.4e-33 144.4 71 93.0
BcaB04g20364 Brassica carinata HOM05D003831 ORTHO05D004440 4.5e-33 144.1 69 94.2
CsaV3_2G032780 Cucumis sativus L. HOM05D003831 ORTHO05D004440 5.9e-33 143.7 71 91.5
DCAR_018638 Daucus carota HOM05D003831 ORTHO05D004440 5.9e-33 143.7 69 95.7
RcHm_v2.0_Chr4g0441961 Rosa chinensis HOM05D003831 ORTHO05D004440 5.9e-33 143.7 69 95.7
THA.LOC104819397 Tarenaya hassleriana HOM05D003831 ORTHO05D004440 5.9e-33 143.7 71 91.5
Cpa.g.sc12.279 Carica papaya HOM05D003831 ORTHO05D004440 7.7e-33 143.3 69 94.2
CiPaw.05G186000 Carya illinoinensis HOM05D003831 ORTHO05D004440 7.7e-33 143.3 71 91.5
CiPaw.06G070400 Carya illinoinensis HOM05D003831 ORTHO05D004440 7.7e-33 143.3 71 91.5
ECA236G1103 Erigeron canadensis HOM05D003831 ORTHO05D004440 7.7e-33 143.3 70 92.9
Thhalv10023792m.g Eutrema salsugineum HOM05D003831 ORTHO05D004440 7.7e-33 143.3 69 92.8
Manes.12G047300 Manihot esculenta HOM05D003831 ORTHO05D004440 7.7e-33 143.3 69 94.2
Manes.13G049300 Manihot esculenta HOM05D003831 ORTHO05D004440 7.7e-33 143.3 69 94.2
Mapoly0054s0132 Marchantia polymorpha HOM05D003831 ORTHO05D004440 7.7e-33 143.3 70 92.9
Sp2g02850 Schrenkiella parvula HOM05D003831 ORTHO05D004440 7.7e-33 143.3 69 92.8
RcHm_v2.0_Chr5g0051151 Rosa chinensis HOM05D003831 ORTHO05D004440 1.0e-32 142.9 71 91.5
Aa31LG2G9120 Aethionema arabicum HOM05D003831 ORTHO05D004440 1.3e-32 142.5 71 91.5
CANSAT01G0447 Cannabis sativa HOM05D003831 ORTHO05D004440 1.3e-32 142.5 69 92.8
CANSAT01G0707 Cannabis sativa HOM05D003831 ORTHO05D004440 1.3e-32 142.5 69 92.8
Lj2g0005470 Lotus japonicus HOM05D003831 ORTHO05D004440 1.3e-32 142.5 71 90.1
Lj2g0012017 Lotus japonicus HOM05D003831 ORTHO05D004440 1.3e-32 142.5 71 90.1
Lj2g0021234 Lotus japonicus HOM05D003831 ORTHO05D004440 1.3e-32 142.5 71 90.1
Nitab4.5_0003020g0070 Nicotiana tabacum HOM05D003831 ORTHO05D004440 1.3e-32 142.5 71 93.0
Nitab4.5_0009005g0010 Nicotiana tabacum HOM05D003831 ORTHO05D004440 1.3e-32 142.5 71 93.0
Pp3c1_41980 Physcomitrium patens HOM05D003831 ORTHO05D004440 1.3e-32 142.5 71 91.5
Glyma.04G094900 Glycine max HOM05D003831 ORTHO05D004440 1.7e-32 142.1 69 92.8
Glyma.06G096400 Glycine max HOM05D003831 ORTHO05D004440 1.7e-32 142.1 69 92.8
Medtr5g034050 Medicago truncatula HOM05D003831 ORTHO05D004440 1.7e-32 142.1 69 94.2
CAN.G874.5 Capsicum annuum HOM05D003831 ORTHO05D004440 2.9e-32 141.4 69 94.2
Ca_03143_v3 Cicer arietinum L. HOM05D003831 ORTHO05D004440 2.9e-32 141.4 71 90.1
ClCG08G017910 Citrullus lanatus HOM05D003831 ORTHO05D004440 2.9e-32 141.4 71 88.7
Peaxi162Scf00515g00317 Petunia axillaris HOM05D003831 ORTHO05D004440 2.9e-32 141.4 69 94.2
Psat2g105160 Pisum sativum HOM05D003831 ORTHO05D004440 2.9e-32 141.4 67 95.5
Sed0002295 Sechium edule HOM05D003831 ORTHO05D004440 2.9e-32 141.4 69 92.8
arahy.Tifrunner.gnm1.ann1.5T40TZ Arachis hypogaea HOM05D003831 ORTHO05D004440 3.8e-32 141.0 69 91.3
arahy.Tifrunner.gnm1.ann1.TXPA6B Arachis hypogaea HOM05D003831 ORTHO05D004440 3.8e-32 141.0 69 91.3
arahy.Tifrunner.gnm1.ann1.Y183F3 Arachis hypogaea HOM05D003831 ORTHO05D004440 3.8e-32 141.0 69 91.3
BcaB03g13254 Brassica carinata HOM05D003831 ORTHO05D004440 3.8e-32 141.0 71 90.1
BcaC05g25023 Brassica carinata HOM05D003831 ORTHO05D004440 3.8e-32 141.0 71 90.1
BcaC07g38667 Brassica carinata HOM05D003831 ORTHO05D004440 3.8e-32 141.0 71 90.1
A06p08090 Brassica napus HOM05D003831 ORTHO05D004440 3.8e-32 141.0 71 90.1
A08p33450 Brassica napus HOM05D003831 ORTHO05D004440 3.8e-32 141.0 71 90.1
C05p09670 Brassica napus HOM05D003831 ORTHO05D004440 3.8e-32 141.0 71 90.1
BolC5t29708H Brassica oleracea HOM05D003831 ORTHO05D004440 3.8e-32 141.0 71 90.1
BolC8t49100H Brassica oleracea HOM05D003831 ORTHO05D004440 3.8e-32 141.0 71 90.1
BraA08t35261Z Brassica rapa HOM05D003831 ORTHO05D004440 3.8e-32 141.0 71 90.1
Glyma.01G029400 Glycine max HOM05D003831 ORTHO05D004440 3.8e-32 141.0 69 91.3
Glyma.02G035900 Glycine max HOM05D003831 ORTHO05D004440 3.8e-32 141.0 69 91.3
QL03p059349 Quercus lobata HOM05D003831 ORTHO05D004440 3.8e-32 141.0 71 88.7
Sp1g10090 Schrenkiella parvula HOM05D003831 ORTHO05D004440 3.8e-32 141.0 71 90.1
SEGI_11017 Sequoiadendron giganteum HOM05D003831 ORTHO05D004440 3.8e-32 141.0 69 92.8
Solyc06g083360.3 Solanum lycopersicum HOM05D003831 ORTHO05D004440 3.8e-32 141.0 69 94.2
Sopen06g034730 Solanum pennellii HOM05D003831 ORTHO05D004440 3.8e-32 141.0 69 94.2
TPR.G30065 Trifolium pratense HOM05D003831 ORTHO05D004440 5.0e-32 140.6 67 95.5
AL2G14420 Arabidopsis lyrata HOM05D003831 ORTHO05D004440 6.5e-32 140.2 69 89.9
AT1G61700 Arabidopsis thaliana HOM05D003831 ORTHO05D004440 6.5e-32 140.2 69 89.9
Carub.0002s0336 Capsella rubella HOM05D003831 ORTHO05D004440 6.5e-32 140.2 69 89.9
Migut.C01236 Erythranthe guttata HOM05D003831 ORTHO05D004440 6.5e-32 140.2 69 94.2
Thhalv10009269m.g Eutrema salsugineum HOM05D003831 ORTHO05D004440 6.5e-32 140.2 71 90.1
Phvul.009G036800 Phaseolus vulgaris HOM05D003831 ORTHO05D004440 6.5e-32 140.2 69 91.3
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 6.5e-32 140.2 69 94.2
SalBow6G3444 Salvia bowleyana HOM05D003831 ORTHO05D004440 6.5e-32 140.2 69 94.2
AL1G22580 Arabidopsis lyrata HOM05D003831 ORTHO05D004440 8.5e-32 139.8 71 90.1
AT1G11475 Arabidopsis thaliana HOM05D003831 ORTHO05D004440 8.5e-32 139.8 71 90.1
Carub.0001s1108 Capsella rubella HOM05D003831 ORTHO05D004440 8.5e-32 139.8 71 90.1
Carub.0005s0891 Capsella rubella HOM05D003831 ORTHO05D004440 8.5e-32 139.8 71 90.1
Lalb_Chr16g0382181 Lupinus albus HOM05D003831 ORTHO05D004440 8.5e-32 139.8 69 92.8
CARHR011740 Cardamine hirsuta HOM05D003831 ORTHO05D004440 1.4e-31 139.0 71 90.1
CARHR255430 Cardamine hirsuta HOM05D003831 ORTHO05D004440 1.4e-31 139.0 71 90.1
CsaV3_5G031450 Cucumis sativus L. HOM05D003831 ORTHO05D004440 2.5e-31 138.3 69 89.9
Sc05g0001950 Simmondsia chinensis HOM05D003831 ORTHO05D004440 2.5e-31 138.3 83 80.7
Ciclev10033492m.g Citrus clementina HOM05D003831 ORTHO05D004440 5.5e-31 137.1 71 88.7
Oeu023101.1 Olea europaea HOM05D003831 ORTHO05D004440 5.5e-31 137.1 64 96.9
Oeu030583.1 Olea europaea HOM05D003831 ORTHO05D004440 5.5e-31 137.1 64 96.9
Sabra03G0070100 Salix brachista HOM05D003831 ORTHO05D004440 5.5e-31 137.1 64 96.9
Aqoxy3G02890 Aquilegia oxysepala HOM05D003831 ORTHO05D004440 7.2e-31 136.7 63 98.4
ClCG05G025450 Citrullus lanatus HOM05D003831 ORTHO05D004440 7.2e-31 136.7 69 88.4
Medtr4g075600 Medicago truncatula HOM05D003831 ORTHO05D004440 7.2e-31 136.7 68 92.6
Sabra06G0106500 Salix brachista HOM05D003831 ORTHO05D004440 7.2e-31 136.7 63 98.4
TAR622G1207 Trochodendron aralioides HOM05D003831 ORTHO05D004440 7.2e-31 136.7 63 98.4
Actinidia39431 Actinidia chinensis HOM05D003831 ORTHO05D004440 9.4e-31 136.3 64 95.3
A01p30570 Brassica napus HOM05D003831 ORTHO05D004440 9.4e-31 136.3 64 95.3
C01p38960 Brassica napus HOM05D003831 ORTHO05D004440 9.4e-31 136.3 64 95.3
Haze_03725 Corylus avellana HOM05D003831 ORTHO05D004440 1.2e-30 136.0 64 95.3
Lsat_1_v5_gn_9_15080 Lactuca sativa HOM05D003831 ORTHO05D004440 1.6e-30 135.6 63 96.8
Atru.chr11.2061 Acer truncatum HOM05D003831 ORTHO05D004440 2.1e-30 135.2 64 95.3
SGA_v2.0_scaffold118G32461 Striga asiatica HOM05D002896 ORTHO05D003263 2.1e-30 135.2 63 96.8
unitig_62.g23596 Utricularia gibba HOM05D003831 ORTHO05D004440 2.1e-30 135.2 64 95.3
MELO3C030275.2 Cucumis melo HOM05D003831 ORTHO05D004440 3.6e-30 134.4 63 96.8
CDE06G1630 Ceratophyllum demersum HOM05D003831 ORTHO05D004440 6.1e-30 133.7 85 77.6
BraA06t24008Z Brassica rapa HOM05D003831 ORTHO05D004440 1.0e-29 132.9 64 93.8
MBI16_g09348_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 1.0e-29 132.9 67 92.5
MBI16_g42769_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 1.0e-29 132.9 67 92.5
MBI10_g21415_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 1.8e-29 132.1 71 87.3
MCO02G327 Micromonas commoda HOM05D003831 ORTHO05D004440 1.8e-29 132.1 69 88.4
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 1.8e-29 132.1 65 92.3
PGSC0003DMG400020165 Solanum tuberosum HOM05D003831 ORTHO05D004440 1.8e-29 132.1 64 93.8
Cre13.g571650 Chlamydomonas reinhardtii HOM05D003831 ORTHO05D004440 3.0e-29 131.3 73 82.2
EL10Ac7g17904 Beta vulgaris HOM05D003831 ORTHO05D004440 3.9e-29 131.0 69 89.9
SMO358G0606 Selaginella moellendorffii HOM05D003831 ORTHO05D004440 3.9e-29 131.0 64 92.2
Medtr5g034040 Medicago truncatula HOM05D003831 ORTHO05D004440 6.7e-29 130.2 67 85.1
Haze_26646 Corylus avellana HOM05D003831 ORTHO05D004440 8.8e-29 129.8 67 88.1
BolC1t03846H Brassica oleracea HOM05D003831 ORTHO05D004440 4.4e-28 127.5 101 64.4
PRCOL_00001275 Prasinoderma coloniale HOM05D003831 ORTHO05D004440 9.7e-28 126.3 69 82.6
SGA_v2.0_scaffold24G10536 Striga asiatica HOM05D003831 ORTHO05D004440 3.1e-26 121.3 62 90.3
BraA01t03189Z Brassica rapa HOM05D003831 ORTHO05D004440 9.1e-26 119.8 121 53.7
MBI05_g22037_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 1.5e-25 119.0 57 96.5
CBR_g48986 Chara braunii HOM05D003831 ORTHO05D004440 3.8e-24 114.4 58 89.7
MBI14_g22904_MAGBIO Magnolia biondii HOM05D000106 ORTHO05D002214 3.8e-24 114.4 57 93.0
MELO3C034128.2 Cucumis melo HOM05D003831 ORTHO05D004440 5.0e-24 114.0 59 86.4
ClCG08G007960 Citrullus lanatus HOM05D003831 ORTHO05D004440 8.5e-24 113.2 53 94.3
Rhsim13G0097000 Rhododendron simsii HOM05D003831 ORTHO05D004440 5.5e-23 110.5 120 50.8
Sed0002376 Sechium edule HOM05D003831 ORTHO05D004440 7.2e-23 110.2 71 73.2
FAN21G2637 Fragaria x ananassa HOM05D003831 ORTHO05D004440 1.6e-22 109.0 53 92.5
FAN25G2861 Fragaria x ananassa HOM05D003831 ORTHO05D004440 1.6e-22 109.0 53 92.5
FAN16G2980 Fragaria x ananassa HOM05D003831 ORTHO05D004440 1.0e-21 106.3 53 88.7
arahy.Tifrunner.gnm1.ann1.Z8M7EL Arachis hypogaea HOM05D003831 ORTHO05D004440 8.2e-19 96.7 69 72.5
C04p07400 Brassica napus HOM05D003831 ORTHO05D004440 4.5e-17 90.9 42 95.2
BolC4t22361H Brassica oleracea HOM05D003831 ORTHO05D004440 4.5e-17 90.9 42 95.2
Sed0003810 Sechium edule HOM05D003831 ORTHO05D004440 1.5e-15 85.9 63 60.3
Lj2g0013677 Lotus japonicus HOM05D003831 ORTHO05D004440 4.2e-15 84.3 62 56.5
arahy.Tifrunner.gnm1.ann1.FY8GKD Arachis hypogaea HOM05D003831 ORTHO05D004440 8.0e-14 80.1 88 50.0
arahy.Tifrunner.gnm1.ann1.M032NN Arachis hypogaea HOM05D003831 ORTHO05D004440 8.0e-14 80.1 46 80.4
CSS0011229 Camellia sinensis var. sinensis HOM05D003831 ORTHO05D004440 1.5e-12 75.9 33 97.0
C09p50350 Brassica napus HOM05D003831 ORTHO05D004440 7.5e-12 73.6 32 96.9
Thecc.02G253800 Theobroma cacao HOM05D003831 ORTHO05D004440 7.5e-12 73.6 32 96.9
Actinidia30054 Actinidia chinensis HOM05D003831 ORTHO05D004440 1.3e-11 72.8 32 93.8
COL.COLO4_24205 Corchorus olitorius HOM05D003831 ORTHO05D004440 1.3e-11 72.8 55 69.1
Ah.15g093500 Amaranthus hybridus HOM05D003831 ORTHO05D004440 2.8e-11 71.6 32 93.8
Lalb_Chr05g0216761 Lupinus albus HOM05D003831 ORTHO05D004440 2.8e-11 71.6 32 93.8
SHI17512 Sapria himalayana HOM05D000002 ORTHO05D000001 2.8e-11 71.6 32 87.5
CSS0004603 Camellia sinensis var. sinensis HOM05D003831 ORTHO05D004440 3.1e-10 68.2 32 96.9
MBI10_g27999_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 3.1e-10 68.2 32 96.9
TPR.G17155 Trifolium pratense HOM05D003831 ORTHO05D004440 9.1e-10 66.6 39 76.9
arahy.Tifrunner.gnm1.ann1.GNJG0F Arachis hypogaea HOM05D003831 ORTHO05D004440 7.7e-09 63.5 32 84.4


User provided reference genes

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