Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0140800 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 4.4e-190 667.9 368 100.0
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 7.1e-140 501.1 314 87.9
Gohir.D13G148400 Gossypium hirsutum HOM05D005990 ORTHO05D007908 1.2e-123 447.2 292 82.5
Gorai.013G166200 Gossypium raimondii HOM05D005990 ORTHO05D007908 1.2e-123 447.2 292 82.5
RhsimUnG0258900 Rhododendron simsii HOM05D005990 ORTHO05D007908 1.2e-123 447.2 324 75.3
TAR626G1157 Trochodendron aralioides HOM05D005990 ORTHO05D007908 4.6e-123 445.3 292 82.2
GSVIVG01014430001 Vitis vinifera HOM05D005990 ORTHO05D007908 6.0e-123 444.9 299 82.3
CSS0030462 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D007908 1.0e-122 444.1 287 81.9
Gohir.A13G143600 Gossypium hirsutum HOM05D005990 ORTHO05D007908 1.0e-122 444.1 292 82.2
Nn1g06745 Nelumbo nucifera HOM05D005990 ORTHO05D007908 1.8e-122 443.4 291 80.4
Hma1.2p1_1143F.1_g261060 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 1.5e-121 440.3 258 90.3
Actinidia35278 Actinidia chinensis HOM05D005990 ORTHO05D007908 1.9e-121 439.9 288 79.9
Cfa020505 Carpinus fangiana HOM05D005990 ORTHO05D007908 2.5e-121 439.5 288 81.6
RcHm_v2.0_Chr5g0035361 Rosa chinensis HOM05D005990 ORTHO05D007908 4.3e-121 438.7 288 80.9
COL.COLO4_09478 Corchorus olitorius HOM05D005990 ORTHO05D007908 5.7e-121 438.3 293 81.9
Manes.03G116500 Manihot esculenta HOM05D005990 ORTHO05D007908 5.7e-121 438.3 288 81.6
Potri.001G406700 Populus trichocarpa HOM05D005990 ORTHO05D007908 5.7e-121 438.3 288 81.2
Duzib213G0189 Durio zibethinus HOM05D005990 ORTHO05D007908 2.2e-120 436.4 287 81.9
Sed0021962 Sechium edule HOM05D005990 ORTHO05D007908 2.2e-120 436.4 283 82.7
Thecc.07G071400 Theobroma cacao HOM05D005990 ORTHO05D007908 2.2e-120 436.4 288 81.9
CDE05G0179 Ceratophyllum demersum HOM05D005990 ORTHO05D007908 4.8e-120 435.3 290 81.7
Lj3g0001925 Lotus japonicus HOM05D005990 ORTHO05D007908 4.8e-120 435.3 290 80.3
QL08p018038 Quercus lobata HOM05D005990 ORTHO05D007908 6.3e-120 434.9 287 80.8
Dinv22366 Davidia involucrata HOM05D005990 ORTHO05D007908 1.4e-119 433.7 283 81.6
Phvul.011G155100 Phaseolus vulgaris HOM05D005990 ORTHO05D007908 1.4e-119 433.7 288 80.6
CANSAT11G2493 Cannabis sativa HOM05D005990 ORTHO05D007908 1.8e-119 433.3 287 79.8
ECA246G2706 Erigeron canadensis HOM05D005990 ORTHO05D007908 3.1e-119 432.6 293 79.5
Lalb_Chr01g0006431 Lupinus albus HOM05D005990 ORTHO05D007908 3.1e-119 432.6 290 81.0
Sc16g0006780 Simmondsia chinensis HOM05D005990 ORTHO05D007908 4.1e-119 432.2 292 78.8
CiPaw.11G176500 Carya illinoinensis HOM05D005990 ORTHO05D007908 5.3e-119 431.8 293 79.5
AUR62029313 Chenopodium quinoa HOM05D005990 ORTHO05D007908 1.2e-118 430.6 278 80.9
FvH4_3g20940 Fragaria vesca HOM05D005990 ORTHO05D007908 1.2e-118 430.6 294 78.2
Ca_11848_v3 Cicer arietinum L. HOM05D005990 ORTHO05D007908 1.5e-118 430.3 286 80.4
Cpa.g.sc80.114 Carica papaya HOM05D005990 ORTHO05D007908 2.0e-118 429.9 287 80.1
CsaV3_3G005970 Cucumis sativus L. HOM05D005990 ORTHO05D007908 2.0e-118 429.9 283 80.6
Aqoxy4G01398 Aquilegia oxysepala HOM05D005990 ORTHO05D007908 2.6e-118 429.5 287 80.8
FAN11G3728 Fragaria x ananassa HOM05D005990 ORTHO05D007908 2.6e-118 429.5 288 79.5
Prupe.4G189900 Prunus persica HOM05D005990 ORTHO05D007908 2.6e-118 429.5 341 71.8
PGR031G1979 Punica granatum HOM05D005990 ORTHO05D007908 3.4e-118 429.1 284 79.6
Lj8A160T67 Lonicera japonica HOM05D005990 ORTHO05D007908 4.5e-118 428.7 259 87.6
MELO3C016553.2 Cucumis melo HOM05D005990 ORTHO05D007908 5.9e-118 428.3 283 80.2
HanXRQChr05g0156471 Helianthus annuus HOM05D005990 ORTHO05D007908 1.3e-117 427.2 290 79.3
Medtr8g464410 Medicago truncatula HOM05D005990 ORTHO05D007908 1.3e-117 427.2 259 84.6
Aa31LG3G10250 Aethionema arabicum HOM05D005990 ORTHO05D007908 1.7e-117 426.8 294 78.9
VMungo1127G2019 Vigna mungo HOM05D005990 ORTHO05D007908 1.7e-117 426.8 290 80.3
MBI02_g35910_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 2.2e-117 426.4 276 82.6
MSTRG.15206 Avicennia marina HOM05D005990 ORTHO05D007908 2.9e-117 426.0 298 76.8
AUR62015602 Chenopodium quinoa HOM05D005990 ORTHO05D007908 2.9e-117 426.0 278 79.9
AL8G29620 Arabidopsis lyrata HOM05D005990 ORTHO05D007908 3.8e-117 425.6 294 78.2
Glyma.06G254100 Glycine max HOM05D005990 ORTHO05D007908 3.8e-117 425.6 290 79.7
PSO210G5100 Papaver somniferum HOM05D005990 ORTHO05D007908 3.8e-117 425.6 288 80.9
ATR0751G163 Amborella trichopoda HOM05D005990 ORTHO05D007908 5.0e-117 425.2 293 75.8
BcaB05g22125 Brassica carinata HOM05D005990 ORTHO05D007908 5.0e-117 425.2 289 79.2
BolC2t07817H Brassica oleracea HOM05D005990 ORTHO05D007908 5.0e-117 425.2 259 85.7
ClCG10G006520 Citrullus lanatus HOM05D005990 ORTHO05D007908 5.0e-117 425.2 283 79.5
Lsat_1_v5_gn_5_6860 Lactuca sativa HOM05D005990 ORTHO05D007908 5.0e-117 425.2 293 78.2
Sabra16G0268100 Salix brachista HOM05D005990 ORTHO05D007908 6.5e-117 424.9 320 74.4
Sabra16G0270400 Salix brachista HOM05D005990 ORTHO05D007908 6.5e-117 424.9 320 74.4
Sp6g16330 Schrenkiella parvula HOM05D005990 ORTHO05D007908 6.5e-117 424.9 323 73.1
AT5G54290 Arabidopsis thaliana HOM05D005990 ORTHO05D007908 8.5e-117 424.5 323 73.4
Glyma.12G147300 Glycine max HOM05D005990 ORTHO05D007908 8.5e-117 424.5 290 79.7
CARHR267580 Cardamine hirsuta HOM05D005990 ORTHO05D007908 1.1e-116 424.1 289 79.6
BcaC03g14345 Brassica carinata HOM05D005990 ORTHO05D007908 1.9e-116 423.3 323 73.1
A02p10420 Brassica napus HOM05D005990 ORTHO05D007908 1.9e-116 423.3 289 78.9
C02p17170 Brassica napus HOM05D005990 ORTHO05D007908 1.9e-116 423.3 323 73.1
BraA02t06108Z Brassica rapa HOM05D005990 ORTHO05D007908 4.2e-116 422.2 259 84.9
PGSC0003DMG402019249 Solanum tuberosum HOM05D005990 ORTHO05D007908 4.2e-116 422.2 288 79.2
Solyc07g063570.4 Solanum lycopersicum HOM05D005990 ORTHO05D007908 5.5e-116 421.8 288 79.2
Thhalv10013940m.g Eutrema salsugineum HOM05D005990 ORTHO05D007908 9.4e-116 421.0 289 78.2
Carub.0008s1464 Capsella rubella HOM05D005990 ORTHO05D007908 1.2e-115 420.6 323 73.1
Nitab4.5_0000297g0120 Nicotiana tabacum HOM05D005990 ORTHO05D007908 1.2e-115 420.6 291 78.0
Sopen07g031750 Solanum pennellii HOM05D005990 ORTHO05D007908 1.2e-115 420.6 288 78.8
Nitab4.5_0008686g0040 Nicotiana tabacum HOM05D005990 ORTHO05D007908 1.6e-115 420.2 288 78.8
MD11G1237300 Malus domestica HOM05D005990 ORTHO05D007908 3.6e-115 419.1 317 74.1
Ciclev10009149m.g Citrus clementina HOM05D005990 ORTHO05D007908 3.9e-114 415.6 259 82.6
Cc05_g12670 Coffea canephora HOM05D005990 ORTHO05D007908 5.1e-114 415.2 297 76.4
Migut.M01860 Erythranthe guttata HOM05D005990 ORTHO05D007908 1.9e-113 413.3 342 68.1
THA.LOC104811848 Tarenaya hassleriana HOM05D005990 ORTHO05D007908 5.7e-113 411.8 308 74.4
unitig_46.g18327 Utricularia gibba HOM05D005990 ORTHO05D007908 7.4e-113 411.4 288 77.1
Atru.chr2.2820 Acer truncatum HOM05D005990 ORTHO05D007908 8.2e-112 407.9 297 75.1
FAN21G0316 Fragaria x ananassa HOM05D005990 ORTHO05D007908 1.2e-110 404.1 308 72.7
HPP92_018217 Vanilla planifolia HOM05D005990 ORTHO05D007908 5.9e-110 401.7 280 75.4
Os12g0137300 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 1.1e-108 397.5 245 92.7
Peaxi162Scf01216g00051 Petunia axillaris HOM05D005990 ORTHO05D007908 1.1e-108 397.5 277 76.5
Eucgr.F03355 Eucalyptus grandis HOM05D005990 ORTHO05D007908 1.4e-108 397.1 270 78.5
SalBow7G3955 Salvia bowleyana HOM05D005990 ORTHO05D007908 3.6e-107 392.5 348 64.7
SGA_v2.0_scaffold9G04955 Striga asiatica HOM05D005990 ORTHO05D007908 1.5e-102 377.1 278 75.2
AagrBONN_evm.TU.Sc2ySwM_344.980 Anthoceros agrestis HOM05D005990 ORTHO05D007908 1.7e-101 373.6 282 73.4
Mapoly0093s0077 Marchantia polymorpha HOM05D005990 ORTHO05D007908 5.0e-101 372.1 288 70.8
Haze_09528 Corylus avellana HOM05D005990 ORTHO05D007908 1.1e-100 370.9 225 87.1
SMO119G0067 Selaginella moellendorffii HOM05D005990 ORTHO05D007908 1.4e-100 370.5 277 69.0
vmacro09559 Vaccinium macrocarpon HOM05D005990 ORTHO05D007908 7.2e-100 368.2 252 79.4
DCAR_008702 Daucus carota HOM05D005990 ORTHO05D007908 1.0e-98 364.4 283 72.8
QL08p017936 Quercus lobata HOM05D005990 ORTHO05D007908 6.7e-98 361.7 277 72.9
arahy.Tifrunner.gnm1.ann1.3KJ3XQ Arachis hypogaea HOM05D005990 ORTHO05D007908 8.8e-98 361.3 324 66.4
arahy.Tifrunner.gnm1.ann1.NX1DPE Arachis hypogaea HOM05D005990 ORTHO05D007908 2.6e-97 359.8 324 66.0
MBI02_g10990_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 2.6e-97 359.8 218 84.9
PSO832G2166 Papaver somniferum HOM05D005990 ORTHO05D007908 2.8e-96 356.3 258 78.3
Ah.04g165420 Amaranthus hybridus HOM05D005990 ORTHO05D007908 3.7e-96 355.9 247 77.3
FAN16G0288 Fragaria x ananassa HOM05D005990 ORTHO05D007908 4.8e-96 355.5 297 68.7
TWI38G1683 Tripterygium wilfordii HOM05D005990 ORTHO05D007908 2.4e-95 353.2 255 76.1
Pp3c15_16730 Physcomitrium patens HOM05D005990 ORTHO05D007908 9.1e-95 351.3 257 71.2
EL10Ac4g08059 Beta vulgaris HOM05D005990 ORTHO05D007908 4.5e-94 349.0 287 68.6
Hma1.2p1_1143F.1_g261070 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 3.3e-89 332.8 196 88.8
Oeu055680.2 Olea europaea HOM05D005990 ORTHO05D007908 2.8e-88 329.7 302 63.6
TPR.G39565 Trifolium pratense HOM05D005990 ORTHO05D007908 2.0e-86 323.6 240 71.7
CAN.G162.104 Capsicum annuum HOM05D005990 ORTHO05D007908 1.5e-84 317.4 275 65.1
CBR_g16976 Chara braunii HOM05D005990 ORTHO05D007908 9.8e-81 304.7 313 56.2
Psat0s617g0120 Pisum sativum HOM05D005990 ORTHO05D007908 2.2e-80 303.5 218 76.6
MBI02_g26442_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 8.9e-74 281.6 238 66.0
Cre07.g357800 Chlamydomonas reinhardtii HOM05D005990 ORTHO05D007908 2.4e-71 273.5 245 59.6
Actinidia18746 Actinidia chinensis HOM05D005990 ORTHO05D007908 1.1e-68 264.6 270 60.0
PRCOL_00006006 Prasinoderma coloniale HOM05D005990 ORTHO05D007908 1.1e-68 264.6 310 54.2
MCO16G378 Micromonas commoda HOM05D005990 ORTHO05D007908 4.1e-63 246.1 281 53.0
C03p17200 Brassica napus HOM05D005990 ORTHO05D007908 2.0e-62 243.8 220 66.4
AagrBONN_evm.TU.Sc2ySwM_117.2025 Anthoceros agrestis HOM05D005990 ORTHO05D007908 2.5e-60 236.9 359 48.2
BolC3t14134H Brassica oleracea HOM05D005990 ORTHO05D007908 2.0e-57 227.3 220 64.5
SEGI_00968 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 4.0e-50 203.0 131 83.2
BcaC01g06300 Brassica carinata HOM05D005990 ORTHO05D007908 1.4e-47 194.5 140 77.9
Hma1.2p1_1302F.1_g274280 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 8.4e-40 168.7 116 81.0
Haze_08411 Corylus avellana HOM05D005990 ORTHO05D007908 2.3e-37 160.6 115 78.3
MD03G1219200 Malus domestica HOM05D005990 ORTHO05D007908 3.9e-37 159.8 207 53.6
SEGI_31484 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 4.0e-34 149.8 93 80.6
CSS0033016 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 2.4e-31 140.6 157 53.5
CSS0043364 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 7.1e-31 139.0 157 52.9
HPP92_027973 Vanilla planifolia HOM05D005990 ORTHO05D007908 7.1e-31 139.0 113 68.1
HPP92_027972 Vanilla planifolia HOM05D005990 ORTHO05D007908 1.4e-18 98.2 80 62.5
Sopen08g023060 Solanum pennellii HOM05D003334 ORTHO05D004076 2.2e-16 90.9 96 55.2
Solyc05g150137.1 Solanum lycopersicum HOM05D005990 ORTHO05D391672 1.6e-14 84.7 59 71.2
HanXRQChr12g0381681 Helianthus annuus HOM05D005990 ORTHO05D221923 3.7e-11 73.6 225 31.1
Sopen10g004100 Solanum pennellii HOM05D005990 ORTHO05D000950 3.4e-09 67.0 46 69.6
MBI17_g13390_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 4.6e-06 56.6 29 100.0
MBI07_g21055_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D022192 7.9e-06 55.8 31 90.3


User provided reference genes

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