Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0137100 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 1.9e-242 842.4 532 100.0
Os12g0133900 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 2.8e-230 802.0 543 93.2
Zm00001eb293550 Zea mays HOM05D004813 ORTHO05D005889 3.0e-171 605.9 552 71.6
Dinv20637 Davidia involucrata HOM05D004813 ORTHO05D005889 1.8e-112 410.6 535 57.4
Nn4g22713 Nelumbo nucifera HOM05D004813 ORTHO05D005889 1.8e-112 410.6 550 52.7
Nitab4.5_0000514g0060 Nicotiana tabacum HOM05D004813 ORTHO05D005889 1.4e-109 401.0 547 53.4
Peaxi162Scf00089g01844 Petunia axillaris HOM05D004813 ORTHO05D005889 1.9e-109 400.6 543 57.1
TAR629G2765 Trochodendron aralioides HOM05D004813 ORTHO05D005889 1.9e-109 400.6 538 54.5
CSS0044871 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 2.5e-109 400.2 540 54.1
CSS0009747 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 7.2e-109 398.7 548 53.3
Cc04_g12130 Coffea canephora HOM05D004813 ORTHO05D005889 3.0e-107 393.3 538 54.5
MBI16_g39216_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.1e-106 391.3 541 51.4
DCAR_031351 Daucus carota HOM05D004813 ORTHO05D005889 8.2e-105 385.2 521 53.6
MBI17_g17505_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.1e-104 384.8 540 54.3
Cfa019150 Carpinus fangiana HOM05D004813 ORTHO05D005889 1.4e-104 384.4 525 46.3
GSVIVG01007723001 Vitis vinifera HOM05D004813 ORTHO05D005889 1.4e-104 384.4 517 48.5
Eucgr.K02829 Eucalyptus grandis HOM05D004813 ORTHO05D005889 1.8e-104 384.0 571 53.9
Phvul.003G201700 Phaseolus vulgaris HOM05D004813 ORTHO05D005889 1.8e-104 384.0 542 54.2
TWI14G0980 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 4.1e-104 382.9 564 53.9
CDE05G0644 Ceratophyllum demersum HOM05D004813 ORTHO05D005889 5.3e-104 382.5 563 52.6
vmacro16622 Vaccinium macrocarpon HOM05D004813 ORTHO05D005889 1.2e-103 381.3 564 48.9
MBI16_g37492_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.6e-103 380.9 544 55.0
Oeu016404.1 Olea europaea HOM05D004813 ORTHO05D005889 4.5e-103 379.4 539 57.5
Glyma.05G038800 Glycine max HOM05D004813 ORTHO05D005889 5.9e-103 379.0 540 55.2
Hund02755 Selenicereus undatus HOM05D004813 ORTHO05D005889 1.0e-102 378.3 546 54.0
Rhsim12G0165800 Rhododendron simsii HOM05D004813 ORTHO05D005889 2.2e-102 377.1 511 49.7
Sabra15G0103000 Salix brachista HOM05D004813 ORTHO05D005889 3.8e-102 376.3 526 54.6
CANSAT80G1068 Cannabis sativa HOM05D004813 ORTHO05D005889 5.0e-102 375.9 540 57.6
Manes.14G064300 Manihot esculenta HOM05D004813 ORTHO05D005889 5.0e-102 375.9 542 51.7
Ciclev10019513m.g Citrus clementina HOM05D004813 ORTHO05D005889 1.5e-101 374.4 563 52.0
VMungo1215G0389 Vigna mungo HOM05D004813 ORTHO05D005889 1.5e-101 374.4 544 52.6
Migut.D01957 Erythranthe guttata HOM05D004813 ORTHO05D005889 1.9e-101 374.0 558 52.2
Thecc.03G014500 Theobroma cacao HOM05D004813 ORTHO05D005889 1.9e-101 374.0 547 56.3
COL.COLO4_30069 Corchorus olitorius HOM05D004813 ORTHO05D005889 2.5e-101 373.6 533 50.8
Potri.012G082600 Populus trichocarpa HOM05D004813 ORTHO05D005889 2.5e-101 373.6 532 52.1
TWI23G0210 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 3.2e-101 373.2 573 53.2
PGR044G0958 Punica granatum HOM05D004813 ORTHO05D005889 4.2e-101 372.9 548 54.6
Glyma.17G088200 Glycine max HOM05D004813 ORTHO05D005889 1.2e-100 371.3 535 54.6
Potri.015G078500 Populus trichocarpa HOM05D004813 ORTHO05D005889 1.2e-100 371.3 536 57.3
Cpa.g.sc76.31 Carica papaya HOM05D004813 ORTHO05D005889 2.7e-100 370.2 536 53.2
Lj4g0001275 Lotus japonicus HOM05D004813 ORTHO05D005889 6.1e-100 369.0 555 51.5
Psat4g058360 Pisum sativum HOM05D004813 ORTHO05D005889 8.0e-100 368.6 533 49.7
Lsat_1_v5_gn_4_75841 Lactuca sativa HOM05D004813 ORTHO05D005889 1.0e-99 368.2 539 50.3
Sc04g0001740 Simmondsia chinensis HOM05D004813 ORTHO05D005889 2.3e-99 367.1 560 52.1
CiPaw.11G024600 Carya illinoinensis HOM05D004813 ORTHO05D005889 3.0e-99 366.7 514 55.1
PSO063G0570 Papaver somniferum HOM05D004813 ORTHO05D005889 1.5e-98 364.4 543 47.9
arahy.Tifrunner.gnm1.ann1.9LWV25 Arachis hypogaea HOM05D004813 ORTHO05D005889 2.6e-98 363.6 546 54.9
MELO3C026213.2 Cucumis melo HOM05D004813 ORTHO05D005889 2.6e-98 363.6 545 52.5
CARHR281210 Cardamine hirsuta HOM05D004813 ORTHO05D005889 3.3e-98 363.2 539 51.0
CsaV3_1G000640 Cucumis sativus L. HOM05D004813 ORTHO05D005889 5.7e-98 362.5 545 51.7
arahy.Tifrunner.gnm1.ann1.J26J1M Arachis hypogaea HOM05D004813 ORTHO05D005889 7.5e-98 362.1 545 53.2
MD14G1178200 Malus domestica HOM05D004813 ORTHO05D005889 7.5e-98 362.1 555 51.4
MD06G1172400 Malus domestica HOM05D004813 ORTHO05D005889 9.7e-98 361.7 554 53.6
PSO832G2178 Papaver somniferum HOM05D004813 ORTHO05D005889 2.2e-97 360.5 540 48.0
BcaB02g10019 Brassica carinata HOM05D004813 ORTHO05D005889 2.8e-97 360.1 534 53.6
Sopen03g031900 Solanum pennellii HOM05D004813 ORTHO05D005889 1.4e-96 357.8 528 55.3
AUR62013092 Chenopodium quinoa HOM05D004813 ORTHO05D005889 2.4e-96 357.1 487 47.6
A07p17440 Brassica napus HOM05D004813 ORTHO05D005889 3.1e-96 356.7 527 53.1
AT5G66540 Arabidopsis thaliana HOM05D004813 ORTHO05D005889 4.1e-96 356.3 540 51.7
BcaC04g23133 Brassica carinata HOM05D004813 ORTHO05D005889 4.1e-96 356.3 531 52.0
Thhalv10003981m.g Eutrema salsugineum HOM05D004813 ORTHO05D005889 4.1e-96 356.3 539 50.5
Lalb_Chr07g0182801 Lupinus albus HOM05D004813 ORTHO05D005889 4.1e-96 356.3 536 53.0
Carub.0002s0981 Capsella rubella HOM05D004813 ORTHO05D005889 5.3e-96 355.9 524 53.1
Gorai.008G296300 Gossypium raimondii HOM05D004813 ORTHO05D005889 5.3e-96 355.9 539 54.7
C09p11820 Brassica napus HOM05D004813 ORTHO05D005889 7.0e-96 355.5 526 53.0
HanXRQChr15g0463041 Helianthus annuus HOM05D004813 ORTHO05D005889 7.0e-96 355.5 540 50.4
BolC9t54072H Brassica oleracea HOM05D004813 ORTHO05D005889 1.2e-95 354.8 529 52.0
SalBow6G0518 Salvia bowleyana HOM05D004813 ORTHO05D005889 1.2e-95 354.8 567 53.6
Prupe.5G171700 Prunus persica HOM05D004813 ORTHO05D005889 2.7e-95 353.6 549 55.0
SGA_v2.0_scaffold114G31819 Striga asiatica HOM05D004813 ORTHO05D005889 2.7e-95 353.6 600 52.3
Gohir.A12G275100 Gossypium hirsutum HOM05D004813 ORTHO05D005889 4.5e-95 352.8 535 55.5
Ca_21934_v3 Cicer arietinum L. HOM05D004813 ORTHO05D005889 5.9e-95 352.4 542 50.9
BcaNung05723 Brassica carinata HOM05D004813 ORTHO05D005889 7.7e-95 352.1 535 50.5
Gohir.D12G275800 Gossypium hirsutum HOM05D004813 ORTHO05D005889 1.0e-94 351.7 538 54.3
PGSC0003DMG400018096 Solanum tuberosum HOM05D004813 ORTHO05D005889 1.0e-94 351.7 534 54.9
Medtr4g105590 Medicago truncatula HOM05D004813 ORTHO05D005889 1.3e-94 351.3 551 53.9
BraA09t36642Z Brassica rapa HOM05D004813 ORTHO05D005889 1.7e-94 350.9 528 52.7
Solyc03g112820.4 Solanum lycopersicum HOM05D004813 ORTHO05D005889 1.7e-94 350.9 535 55.0
Sed0018710 Sechium edule HOM05D004813 ORTHO05D005889 2.2e-94 350.5 538 52.8
Atru.chr8.1447 Acer truncatum HOM05D004813 ORTHO05D005889 5.0e-94 349.4 562 52.3
unitig_0.g15 Utricularia gibba HOM05D004813 ORTHO05D005889 5.0e-94 349.4 534 47.2
AUR62010096 Chenopodium quinoa HOM05D004813 ORTHO05D005889 1.5e-93 347.8 507 44.4
A09p09960 Brassica napus HOM05D004813 ORTHO05D005889 1.9e-93 347.4 531 51.6
Aa31LG1G15060 Aethionema arabicum HOM05D004813 ORTHO05D005889 5.5e-93 345.9 544 50.0
Sp2g30180 Schrenkiella parvula HOM05D004813 ORTHO05D005889 5.5e-93 345.9 532 50.6
Carub.0008s2799 Capsella rubella HOM05D004813 ORTHO05D005889 7.2e-93 345.5 528 50.6
FAN18G4177 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.2e-92 344.7 530 49.2
RcHm_v2.0_Chr7g0193361 Rosa chinensis HOM05D004813 ORTHO05D005889 1.2e-92 344.7 543 49.9
AL8G44980 Arabidopsis lyrata HOM05D004813 ORTHO05D005889 1.6e-92 344.4 538 52.0
QL10p010983 Quercus lobata HOM05D004813 ORTHO05D005889 2.7e-92 343.6 565 48.8
ECA232G2493 Erigeron canadensis HOM05D004813 ORTHO05D005889 4.7e-92 342.8 547 46.8
FAN13G1879 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.8e-91 340.9 528 49.4
Aqoxy3G02883 Aquilegia oxysepala HOM05D004813 ORTHO05D005889 3.0e-91 340.1 554 50.2
Haze_07517 Corylus avellana HOM05D004813 ORTHO05D005889 3.0e-91 340.1 556 51.4
HPP92_018752 Vanilla planifolia HOM05D004813 ORTHO05D005889 1.2e-90 338.2 517 51.5
FAN18G0441 Fragaria x ananassa HOM05D004813 ORTHO05D005889 3.4e-90 336.7 532 50.0
ClCG06G017810 Citrullus lanatus HOM05D004813 ORTHO05D005889 7.5e-90 335.5 612 47.5
FAN08G2504 Fragaria x ananassa HOM05D004813 ORTHO05D005889 7.5e-90 335.5 536 49.6
FAN04G1884 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.7e-89 334.3 526 47.7
Lj9A420T39 Lonicera japonica HOM05D004813 ORTHO05D005889 1.7e-89 334.3 537 44.3
ATR1091G095 Amborella trichopoda HOM05D004813 ORTHO05D005889 2.2e-89 334.0 515 47.6
FvH4_5g05471 Fragaria vesca HOM05D004813 ORTHO05D005889 6.3e-89 332.4 532 50.6
EL10Ac9g21440 Beta vulgaris HOM05D004813 ORTHO05D005889 5.4e-88 329.3 567 50.4
Atru.chr9.2495 Acer truncatum HOM05D004813 ORTHO05D005889 9.1e-88 328.6 540 52.4
TPR.G37503 Trifolium pratense HOM05D004813 ORTHO05D005889 2.5e-85 320.5 554 52.3
Nitab4.5_0008678g0020 Nicotiana tabacum HOM05D004813 ORTHO05D005889 8.8e-83 312.0 291 62.2
Haze_17000 Corylus avellana HOM05D004813 ORTHO05D005889 5.0e-78 296.2 527 43.5
BraA07t29465Z Brassica rapa HOM05D004813 ORTHO05D005889 1.6e-76 291.2 462 50.4
SMO367G0656 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 6.8e-75 285.8 486 50.2
MD01G1006000 Malus domestica HOM05D004813 ORTHO05D005889 1.2e-74 285.0 363 56.5
SMO275G0031 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 2.4e-72 277.3 462 42.4
Pp3c4_31210 Physcomitrium patens HOM05D004813 ORTHO05D005889 4.6e-71 273.1 543 42.7
Mapoly0077s0037 Marchantia polymorpha HOM05D004813 ORTHO05D005889 5.9e-71 272.7 536 42.0
Psat4g058280 Pisum sativum HOM05D004813 ORTHO05D005889 7.0e-64 249.2 512 37.5
Ah.01g009190 Amaranthus hybridus HOM05D004813 ORTHO05D005889 2.0e-63 247.7 581 44.1
Oeu020911.1 Olea europaea HOM05D004813 ORTHO05D005889 3.5e-63 246.9 300 53.0
AagrBONN_evm.TU.Sc2ySwM_369.357 Anthoceros agrestis HOM05D004813 ORTHO05D005889 1.2e-60 238.4 551 34.1
CAN.G1166.5 Capsicum annuum HOM05D004813 ORTHO05D005889 1.1e-53 215.3 159 70.4
PGR044G0267 Punica granatum HOM05D004813 ORTHO05D005889 1.8e-51 208.0 147 70.7
arahy.Tifrunner.gnm1.ann1.J34B41 Arachis hypogaea HOM05D004813 ORTHO05D005889 7.6e-50 202.6 205 56.6
Cre08.g370601 Chlamydomonas reinhardtii HOM05D004813 ORTHO05D005889 1.3e-49 201.8 244 48.4
CBR_g26354 Chara braunii HOM05D004813 ORTHO05D005889 2.9e-49 200.7 224 49.6
Actinidia19105 Actinidia chinensis HOM05D004813 ORTHO05D005889 8.4e-49 199.1 358 46.9
Actinidia19106 Actinidia chinensis HOM05D004813 ORTHO05D005889 1.9e-48 198.0 125 81.6
BolC7t43059H Brassica oleracea HOM05D004813 ORTHO05D005889 1.7e-46 191.4 250 47.6
C07p25370 Brassica napus HOM05D004813 ORTHO05D005889 9.3e-40 169.1 243 46.5
BcaC06g34713 Brassica carinata HOM05D004813 ORTHO05D005889 5.1e-38 163.3 188 51.1
BcaNung06644 Brassica carinata HOM05D004813 ORTHO05D005889 5.1e-38 163.3 188 51.1
PRCOL_00002680 Prasinoderma coloniale HOM05D004813 ORTHO05D005889 6.6e-38 162.9 247 40.5
CAN.G1166.4 Capsicum annuum HOM05D004813 ORTHO05D005889 4.2e-32 143.7 372 40.3
SEGI_37748 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 1.1e-27 129.0 380 42.4
SEGI_16864 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 4.0e-27 127.1 103 68.0
Haze_20617 Corylus avellana HOM05D004813 ORTHO05D005889 3.3e-21 107.5 153 47.1
MCO01G452 Micromonas commoda HOM05D004813 ORTHO05D005889 6.9e-19 99.8 250 32.8
MBI14_g23619_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 3.4e-18 97.4 62 79.0
MBI07_g10351_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.0e-17 95.9 148 43.2
Lj3g0016907 Lotus japonicus HOM05D004813 ORTHO05D005889 2.3e-14 84.7 62 69.4
MBI05_g41028_MAGBIO Magnolia biondii HOM05D000669 ORTHO05D005889 6.7e-14 83.2 57 77.2
HanXRQChr11g0336351 Helianthus annuus HOM05D004813 ORTHO05D005889 1.6e-12 78.6 77 53.2
Lj6g0012951 Lotus japonicus HOM05D004813 ORTHO05D005889 6.3e-12 76.6 69 60.9
SEGI_40991 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 4.1e-11 73.9 67 58.2
SalBow1G5081 Salvia bowleyana HOM05D004813 ORTHO05D018488 7.6e-10 69.7 59 64.4
arahy.Tifrunner.gnm1.ann1.YI6NTU Arachis hypogaea HOM05D004813 ORTHO05D005889 3.8e-09 67.4 53 69.8
MBI03_g03787_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 2.1e-07 61.6 37 78.4
BcaB02g10018 Brassica carinata HOM05D004813 ORTHO05D005889 2.7e-07 61.2 91 39.6
BcaC04g21797 Brassica carinata HOM05D004813 ORTHO05D005889 1.3e-06 58.9 54 61.1
Mapoly0050s0001 Marchantia polymorpha HOM05D004813 ORTHO05D005889 1.3e-06 58.9 99 41.4
Medtr0130s0060 Medicago truncatula HOM05D003167 ORTHO05D003929 8.7e-06 56.2 36 83.3


User provided reference genes

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