Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0132700 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 1.7e-265 918.7 444 100.0
Os12g0129400 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 3.8e-257 891.0 444 96.2
Zm00001eb405260 Zea mays HOM05D006173 ORTHO05D007685 3.8e-228 794.7 446 85.2
Potri.016G030400 Populus trichocarpa HOM05D006173 ORTHO05D007685 1.6e-170 603.2 448 63.2
Ciclev10011725m.g Citrus clementina HOM05D006173 ORTHO05D007685 1.1e-166 590.5 445 61.6
Gorai.007G351000 Gossypium raimondii HOM05D006173 ORTHO05D007685 1.4e-166 590.1 441 63.0
Gohir.D11G320800 Gossypium hirsutum HOM05D006173 ORTHO05D007685 1.8e-166 589.7 441 63.0
Thecc.05G131000 Theobroma cacao HOM05D006173 ORTHO05D007685 1.8e-166 589.7 441 63.7
Hma1.2p1_0044F.1_g026020 Hydrangea macrophylla HOM05D006173 ORTHO05D007685 1.0e-164 583.9 462 59.1
Gohir.A11G305400 Gossypium hirsutum HOM05D006173 ORTHO05D007685 1.3e-164 583.6 441 62.4
Lj1g0020171 Lotus japonicus HOM05D006173 ORTHO05D007685 1.1e-163 580.5 451 60.1
TWI74G0774 Tripterygium wilfordii HOM05D006173 ORTHO05D007685 3.2e-163 578.9 450 60.4
Manes.10G077600 Manihot esculenta HOM05D006173 ORTHO05D007685 3.6e-162 575.5 448 60.0
Duzib106G1718 Durio zibethinus HOM05D006173 ORTHO05D007685 4.7e-162 575.1 441 62.8
PSO541G4485 Papaver somniferum HOM05D006173 ORTHO05D007685 2.3e-161 572.8 441 61.2
Atru.chr1.1516 Acer truncatum HOM05D006173 ORTHO05D007685 5.2e-161 571.6 447 60.9
Cfa019941 Carpinus fangiana HOM05D006173 ORTHO05D007685 8.8e-161 570.9 448 60.9
Actinidia17973 Actinidia chinensis HOM05D006173 ORTHO05D007685 1.3e-159 567.0 448 58.7
Dinv10196 Davidia involucrata HOM05D006173 ORTHO05D007685 3.7e-159 565.5 447 59.7
PSO675G1003 Papaver somniferum HOM05D006173 ORTHO05D007685 3.7e-159 565.5 441 61.0
Sabra16G0033900 Salix brachista HOM05D006173 ORTHO05D007685 3.7e-159 565.5 496 56.0
Medtr7g088540 Medicago truncatula HOM05D006173 ORTHO05D007685 6.3e-159 564.7 454 58.4
Cpa.g.sc33.197 Carica papaya HOM05D006173 ORTHO05D007685 1.8e-158 563.1 447 58.8
Prupe.7G021600 Prunus persica HOM05D006173 ORTHO05D007685 1.8e-158 563.1 446 59.6
CiPaw.10G124100 Carya illinoinensis HOM05D006173 ORTHO05D007685 3.5e-157 558.9 450 60.0
Glyma.03G120400 Glycine max HOM05D006173 ORTHO05D007685 5.9e-157 558.1 446 58.7
Glyma.19G125000 Glycine max HOM05D006173 ORTHO05D007685 1.0e-156 557.4 446 58.1
BcaC07g40109 Brassica carinata HOM05D006173 ORTHO05D007685 1.7e-156 556.6 449 59.9
Cc06_g22820 Coffea canephora HOM05D006173 ORTHO05D007685 6.5e-156 554.7 464 56.2
MSTRG.10773 Avicennia marina HOM05D006173 ORTHO05D007685 2.5e-155 552.7 441 59.4
arahy.Tifrunner.gnm1.ann1.NS6SL1 Arachis hypogaea HOM05D006173 ORTHO05D007685 2.1e-154 549.7 462 56.1
A09p49770 Brassica napus HOM05D006173 ORTHO05D007685 2.1e-154 549.7 458 59.0
BraA09t40430Z Brassica rapa HOM05D006173 ORTHO05D007685 2.1e-154 549.7 458 59.0
C08p32150 Brassica napus HOM05D006173 ORTHO05D007685 3.6e-154 548.9 453 59.4
MELO3C009724.2 Cucumis melo HOM05D006173 ORTHO05D007685 1.0e-153 547.4 448 58.9
EL10Ac3g07343 Beta vulgaris HOM05D006173 ORTHO05D007685 1.8e-153 546.6 443 57.8
BolC8t50833H Brassica oleracea HOM05D006173 ORTHO05D007685 1.8e-153 546.6 453 58.9
Haze_20298 Corylus avellana HOM05D006173 ORTHO05D007685 3.0e-153 545.8 467 57.2
Thhalv10005968m.g Eutrema salsugineum HOM05D006173 ORTHO05D007685 3.0e-153 545.8 448 59.6
Eucgr.K01689 Eucalyptus grandis HOM05D006173 ORTHO05D007685 4.0e-153 545.4 454 55.7
Phvul.001G116600 Phaseolus vulgaris HOM05D006173 ORTHO05D007685 5.2e-153 545.0 446 56.7
PGR142G0634 Punica granatum HOM05D006173 ORTHO05D007685 8.8e-153 544.3 451 56.8
CsaV3_3G039830 Cucumis sativus L. HOM05D006173 ORTHO05D007685 2.6e-152 542.7 449 59.5
Migut.K00169 Erythranthe guttata HOM05D006173 ORTHO05D007685 2.6e-152 542.7 443 58.9
FvH4_7g04320 Fragaria vesca HOM05D006173 ORTHO05D007685 2.6e-152 542.7 443 57.6
Carub.0005s2364 Capsella rubella HOM05D006173 ORTHO05D007685 3.4e-152 542.3 449 60.4
CARHR167050 Cardamine hirsuta HOM05D006173 ORTHO05D007685 3.4e-152 542.3 449 59.9
BcaC07g40002 Brassica carinata HOM05D006173 ORTHO05D007685 4.4e-152 542.0 447 59.5
Sed0007984 Sechium edule HOM05D006173 ORTHO05D007685 4.4e-152 542.0 451 59.0
PGSC0003DMG400017881 Solanum tuberosum HOM05D006173 ORTHO05D007685 5.7e-152 541.6 443 57.1
AT3G56900 Arabidopsis thaliana HOM05D006173 ORTHO05D007685 1.3e-151 540.4 447 59.7
Solyc08g016801.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 2.8e-151 539.3 441 57.1
ClCG10G016510 Citrullus lanatus HOM05D006173 ORTHO05D007685 6.3e-151 538.1 488 54.9
AL5G38300 Arabidopsis lyrata HOM05D006173 ORTHO05D007685 8.3e-151 537.7 448 58.9
Sp5g05690 Schrenkiella parvula HOM05D006173 ORTHO05D007685 8.3e-151 537.7 451 59.2
Oeu060754.2 Olea europaea HOM05D006173 ORTHO05D007685 1.1e-150 537.3 481 54.9
Sopen08g011280 Solanum pennellii HOM05D006173 ORTHO05D007685 2.4e-150 536.2 441 56.5
THA.LOC104814894 Tarenaya hassleriana HOM05D006173 ORTHO05D007685 1.2e-149 533.9 443 57.8
VMungo0331G1996 Vigna mungo HOM05D006173 ORTHO05D007685 3.5e-149 532.3 446 55.4
FAN10G0117 Fragaria x ananassa HOM05D006173 ORTHO05D007685 4.5e-149 531.9 454 56.2
ECA247G0085 Erigeron canadensis HOM05D006173 ORTHO05D007685 1.9e-147 526.6 445 56.6
Peaxi162Scf00937g00117 Petunia axillaris HOM05D006173 ORTHO05D007685 1.0e-145 520.8 426 58.0
arahy.Tifrunner.gnm1.ann1.TSE1DU Arachis hypogaea HOM05D006173 ORTHO05D007685 2.3e-145 519.6 466 53.9
Aa31LG10G11760 Aethionema arabicum HOM05D006173 ORTHO05D007685 1.7e-143 513.5 525 52.4
SEGI_22413 Sequoiadendron giganteum HOM05D006173 ORTHO05D007685 1.1e-142 510.8 469 54.6
TPR.G27968 Trifolium pratense HOM05D006173 ORTHO05D007685 1.4e-142 510.4 421 57.2
HanXRQChr14g0457301 Helianthus annuus HOM05D006173 ORTHO05D007685 2.7e-141 506.1 443 56.2
FAN01G1644 Fragaria x ananassa HOM05D006173 ORTHO05D007685 1.3e-140 503.8 547 47.5
Lsat_1_v5_gn_9_32341 Lactuca sativa HOM05D006173 ORTHO05D007685 1.3e-140 503.8 444 55.6
FAN06G1001 Fragaria x ananassa HOM05D006173 ORTHO05D007685 2.3e-137 493.0 464 52.8
AUR62020996 Chenopodium quinoa HOM05D006173 ORTHO05D007685 4.0e-137 492.3 432 55.3
MD12G1112000 Malus domestica HOM05D006173 ORTHO05D007685 8.9e-137 491.1 529 49.0
CDE02G3082 Ceratophyllum demersum HOM05D006173 ORTHO05D007685 3.0e-132 476.1 443 53.0
CSS0033436 Camellia sinensis var. sinensis HOM05D006173 ORTHO05D007685 5.6e-131 471.9 430 54.2
Hund19061 Selenicereus undatus HOM05D006173 ORTHO05D007685 1.2e-130 470.7 426 53.5
TAR623G0939 Trochodendron aralioides HOM05D006173 ORTHO05D007685 2.1e-130 469.9 401 57.1
Sc19g0007880 Simmondsia chinensis HOM05D006173 ORTHO05D007685 9.8e-128 461.1 422 54.3
Aqoxy3G01734 Aquilegia oxysepala HOM05D006173 ORTHO05D007685 1.3e-124 450.7 332 63.0
vmacro07758 Vaccinium macrocarpon HOM05D006173 ORTHO05D007685 6.2e-122 441.8 490 47.3
SalBow1G0987 Salvia bowleyana HOM05D006173 ORTHO05D007685 2.2e-119 433.3 470 49.1
Mapoly0010s0124 Marchantia polymorpha HOM05D006173 ORTHO05D007685 1.2e-117 427.6 480 45.6
SGA_v2.0_scaffold106G30556 Striga asiatica HOM05D006173 ORTHO05D007685 1.1e-113 414.5 459 47.7
AUR62018437 Chenopodium quinoa HOM05D006173 ORTHO05D007685 6.4e-111 405.2 414 50.7
Psat3g082320 Pisum sativum HOM05D006173 ORTHO05D007685 2.4e-110 403.3 351 56.1
SMO116G0186 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 3.1e-105 386.3 452 43.1
SMO133G0039 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 4.0e-105 386.0 452 43.1
Pp3c11_18220 Physcomitrium patens HOM05D006173 ORTHO05D007685 1.9e-102 377.1 460 41.7
MBI19_g25019_MAGBIO Magnolia biondii HOM05D006173 ORTHO05D007685 5.4e-102 375.6 389 51.9
RhsimUnG0020600 Rhododendron simsii HOM05D006173 ORTHO05D007685 4.9e-95 352.4 457 43.1
GSVIVG01025850001 Vitis vinifera HOM05D006173 ORTHO05D007685 9.3e-94 348.2 207 72.9
Ca_08352_v3 Cicer arietinum L. HOM05D006173 ORTHO05D007685 1.9e-91 340.5 302 55.6
MD14G1101100 Malus domestica HOM05D006173 ORTHO05D007685 1.2e-88 331.3 206 70.4
Solyc08g016808.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 2.2e-87 327.0 333 47.7
RcHm_v2.0_Chr1g0329271 Rosa chinensis HOM05D006173 ORTHO05D007685 5.5e-86 322.4 197 71.1
ATR0307G134 Amborella trichopoda HOM05D006173 ORTHO05D007685 1.2e-85 321.2 198 70.7
VMungo1383G1641 Vigna mungo HOM05D006173 ORTHO05D007685 4.6e-85 319.3 407 42.8
Lalb_Chr22g0358001 Lupinus albus HOM05D006173 ORTHO05D007685 4.3e-83 312.8 197 67.5
Nitab4.5_0003840g0020 Nicotiana tabacum HOM05D006173 ORTHO05D007685 3.1e-81 306.6 260 55.0
QL07p014498 Quercus lobata HOM05D006173 ORTHO05D007685 1.3e-79 301.2 184 69.6
SMO069G0001 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 1.6e-77 294.3 227 55.1
Nitab4.5_0000211g0120 Nicotiana tabacum HOM05D006173 ORTHO05D007685 1.3e-76 291.2 261 52.1
HPP92_002170 Vanilla planifolia HOM05D006173 ORTHO05D007685 6.3e-74 282.3 215 63.3
unitig_46.g18486 Utricularia gibba HOM05D006173 ORTHO05D007685 2.6e-64 250.4 200 60.0
Lj1A24G66 Lonicera japonica HOM05D006173 ORTHO05D007685 2.2e-63 247.3 151 71.5
Lalb_Chr22g0357991 Lupinus albus HOM05D006173 ORTHO05D007685 9.7e-59 231.9 241 48.5
RcHm_v2.0_Chr1g0329281 Rosa chinensis HOM05D006173 ORTHO05D007685 2.4e-57 227.3 227 48.5
CBR_g54315 Chara braunii HOM05D006173 ORTHO05D007685 5.3e-57 226.1 345 37.4
FAN03G1994 Fragaria x ananassa HOM05D006173 ORTHO05D007685 1.5e-56 224.6 235 47.7
ATR0307G100 Amborella trichopoda HOM05D006173 ORTHO05D007685 1.7e-55 221.1 234 46.6
Lj1A24G67 Lonicera japonica HOM05D006173 ORTHO05D007685 1.5e-54 218.0 265 46.8
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 1.5e-54 218.0 215 51.2
MD14G1101000 Malus domestica HOM05D006173 ORTHO05D007685 1.9e-54 217.6 248 46.8
CANSAT64G0701 Cannabis sativa HOM05D006173 ORTHO05D007685 2.1e-53 214.2 134 70.9
Solyc08g036600.3 Solanum lycopersicum HOM05D006173 ORTHO05D007685 2.0e-48 197.6 205 46.3
DCAR_020632 Daucus carota HOM05D002466 ORTHO05D002668 1.4e-41 174.9 192 47.4
GSVIVG01025851001 Vitis vinifera HOM05D006173 ORTHO05D007685 2.0e-40 171.0 178 50.6
QL07p014493 Quercus lobata HOM05D006173 ORTHO05D007685 1.7e-39 167.9 167 48.5
Os12g0131300 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 2.9e-39 167.2 93 90.3
PRCOL_00002577 Prasinoderma coloniale HOM05D006173 ORTHO05D007685 4.7e-37 159.8 272 33.1
Nitab4.5_0000275g0010 Nicotiana tabacum HOM05D006173 ORTHO05D007685 4.4e-35 153.3 87 72.4
TAR623G0990 Trochodendron aralioides HOM05D006173 ORTHO05D007685 2.2e-34 151.0 97 69.1
SGA_v2.0_scaffold106G30559 Striga asiatica HOM05D000268 ORTHO05D000261 3.5e-32 143.7 264 34.8
Nitab4.5_0000211g0140 Nicotiana tabacum HOM05D006173 ORTHO05D007685 4.7e-29 133.3 89 68.5
Lj2A730T36 Lonicera japonica HOM05D006173 ORTHO05D007685 2.2e-26 124.4 241 34.0
Nitab4.5_0003840g0030 Nicotiana tabacum HOM05D006173 ORTHO05D007685 1.0e-23 115.5 70 68.6
MCO12G281 Micromonas commoda HOM05D006173 ORTHO05D007685 9.5e-22 109.0 223 30.0
Os12g0129650 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 3.4e-19 100.5 57 87.7
Lsat_1_v5_gn_4_93961 Lactuca sativa HOM05D006173 ORTHO05D007685 1.8e-12 78.2 51 62.7
Lj2A730T35 Lonicera japonica HOM05D006173 ORTHO05D007685 1.8e-12 78.2 56 66.1
TAR625G1461 Trochodendron aralioides HOM05D002634 ORTHO05D003100 4.3e-06 57.0 180 25.0


User provided reference genes

Program Settings