Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0130800 Oryza sativa ssp. japonica HOM05D002005 ORTHO05D003757 2.1e-231 805.4 448 100.0
Os12g0127650 Oryza sativa ssp. japonica HOM05D002005 ORTHO05D003757 5.7e-224 780.8 438 99.5
Zm00001eb093510 Zea mays HOM05D002005 ORTHO05D003757 8.6e-55 218.8 486 37.2
MBI19_g06602_MAGBIO Magnolia biondii HOM05D002005 ORTHO05D003757 2.7e-32 144.1 444 32.0
Ca_03430_v3 Cicer arietinum L. HOM05D002005 ORTHO05D003757 9.6e-30 135.6 474 28.9
TAR369G0234 Trochodendron aralioides HOM05D002005 ORTHO05D003757 4.7e-29 133.3 446 28.9
Aqoxy3G00499 Aquilegia oxysepala HOM05D002005 ORTHO05D003757 1.4e-28 131.7 455 27.3
Zm00001eb150130 Zea mays HOM05D002005 ORTHO05D003757 1.2e-27 128.6 518 29.0
TAR623G1062 Trochodendron aralioides HOM05D002005 ORTHO05D003757 3.8e-26 123.6 462 29.4
Zm00001eb150100 Zea mays HOM05D002005 ORTHO05D003757 2.4e-25 120.9 518 28.0
Nn7g38016 Nelumbo nucifera HOM05D002005 ORTHO05D003757 7.1e-25 119.4 458 29.5
Dinv37045 Davidia involucrata HOM05D002005 ORTHO05D003757 1.6e-24 118.2 467 27.0
Sabra19G0054900 Salix brachista HOM05D002005 ORTHO05D003757 2.1e-24 117.9 448 27.5
BraA10t44218Z Brassica rapa HOM05D002005 ORTHO05D003757 2.7e-24 117.5 457 27.4
Actinidia37843 Actinidia chinensis HOM05D002005 ORTHO05D003757 4.6e-24 116.7 465 26.5
Os01g0812050 Oryza sativa ssp. japonica HOM05D002005 ORTHO05D003757 6.0e-24 116.3 533 26.8
Glyma.19G121300 Glycine max HOM05D002005 ORTHO05D003757 1.5e-22 111.7 459 27.5
MD05G1057800 Malus domestica HOM05D002005 ORTHO05D003757 1.5e-22 111.7 455 26.2
Glyma.03G004800 Glycine max HOM05D002005 ORTHO05D003757 1.9e-22 111.3 456 27.2
THA.LOC104820809 Tarenaya hassleriana HOM05D002005 ORTHO05D003757 2.8e-21 107.5 464 26.1
CSS0037844 Camellia sinensis var. sinensis HOM05D002005 ORTHO05D003757 8.1e-21 105.9 467 25.3
HPP92_005921 Vanilla planifolia HOM05D002005 ORTHO05D003757 8.1e-21 105.9 421 27.6
BcaC04g18741 Brassica carinata HOM05D002005 ORTHO05D003757 1.1e-20 105.5 465 26.2
A10p21570 Brassica napus HOM05D002005 ORTHO05D003757 1.1e-20 105.5 433 27.3
BolC9t58754H Brassica oleracea HOM05D002005 ORTHO05D003757 1.1e-20 105.5 465 26.2
Cfa019886 Carpinus fangiana HOM05D002005 ORTHO05D003757 1.1e-20 105.5 464 28.2
Lalb_Chr14g0365081 Lupinus albus HOM05D002005 ORTHO05D003757 1.8e-20 104.8 464 26.5
Prupe.8G087600 Prunus persica HOM05D002005 ORTHO05D003757 1.8e-20 104.8 463 27.0
RhsimUnG0023200 Rhododendron simsii HOM05D002005 ORTHO05D003757 1.8e-20 104.8 463 24.4
Manes.08G155700 Manihot esculenta HOM05D002005 ORTHO05D003757 5.3e-20 103.2 455 25.9
Medtr7g087490 Medicago truncatula HOM05D002005 ORTHO05D003757 9.0e-20 102.4 476 26.3
Carub.0006s1612 Capsella rubella HOM05D002005 ORTHO05D003757 1.2e-19 102.1 473 26.6
VMungo1383G0221 Vigna mungo HOM05D002005 ORTHO05D003757 1.5e-19 101.7 446 28.0
Duzib177G0589 Durio zibethinus HOM05D002005 ORTHO05D003757 2.0e-19 101.3 475 23.8
Cc00_g08730 Coffea canephora HOM05D002005 ORTHO05D003757 2.6e-19 100.9 476 25.0
C09p59060 Brassica napus HOM05D002005 ORTHO05D003757 3.4e-19 100.5 457 26.3
C09p59080 Brassica napus HOM05D002005 ORTHO05D003757 3.4e-19 100.5 457 26.3
Psat3g084320 Pisum sativum HOM05D002005 ORTHO05D003757 3.4e-19 100.5 515 25.8
TPR.G23643 Trifolium pratense HOM05D002005 ORTHO05D003757 3.4e-19 100.5 473 26.0
Prupe.7G025700 Prunus persica HOM05D002005 ORTHO05D003757 5.8e-19 99.8 482 27.0
Haze_20366 Corylus avellana HOM05D002005 ORTHO05D003757 7.6e-19 99.4 466 27.7
Oeu044220.1 Olea europaea HOM05D002005 ORTHO05D003757 9.9e-19 99.0 482 24.5
PSO339G2450 Papaver somniferum HOM05D002005 ORTHO05D003757 1.7e-18 98.2 466 26.0
ClCG09G013260 Citrullus lanatus HOM05D002005 ORTHO05D003757 4.9e-18 96.7 498 24.5
Peaxi162Scf00003g05364 Petunia axillaris HOM05D002005 ORTHO05D003757 8.4e-18 95.9 474 25.9
Phvul.001G101800 Phaseolus vulgaris HOM05D002005 ORTHO05D003757 8.4e-18 95.9 452 26.1
Potri.013G068800 Populus trichocarpa HOM05D002005 ORTHO05D003757 2.4e-17 94.4 454 25.6
SGA_v2.0_scaffold66G22332 Striga asiatica HOM05D002005 ORTHO05D003757 2.4e-17 94.4 447 30.2
unitig_21.g20665 Utricularia gibba HOM05D002005 ORTHO05D003757 2.4e-17 94.4 463 26.3
BcaB08g36725 Brassica carinata HOM05D002005 ORTHO05D003757 3.2e-17 94.0 462 26.0
PSO801G0543 Papaver somniferum HOM05D002005 ORTHO05D003757 4.2e-17 93.6 466 24.9
FAN20G0782 Fragaria x ananassa HOM05D002005 ORTHO05D003757 5.4e-17 93.2 464 26.1
SalBow6G5301 Salvia bowleyana HOM05D002005 ORTHO05D003757 7.1e-17 92.8 463 24.0
SalBow6G5969 Salvia bowleyana HOM05D002005 ORTHO05D003757 7.1e-17 92.8 463 24.0
MSTRG.19759 Avicennia marina HOM05D002005 ORTHO05D003757 1.2e-16 92.0 437 25.6
Oeu023030.1 Olea europaea HOM05D002005 ORTHO05D003757 1.2e-16 92.0 438 23.5
Atru.chr2.1605 Acer truncatum HOM05D002005 ORTHO05D003757 1.6e-16 91.7 466 23.0
Potri.019G044500 Populus trichocarpa HOM05D002005 ORTHO05D003757 1.6e-16 91.7 459 25.7
Sc22g0002340 Simmondsia chinensis HOM05D002005 ORTHO05D003757 2.1e-16 91.3 498 26.5
THA.LOC104802888 Tarenaya hassleriana HOM05D002005 ORTHO05D003757 4.6e-16 90.1 466 24.5
Manes.09G134400 Manihot esculenta HOM05D002005 ORTHO05D003757 1.7e-15 88.2 451 25.5
Thhalv10012439m.g Eutrema salsugineum HOM05D002005 ORTHO05D003757 3.0e-15 87.4 452 23.9
Sed0026327 Sechium edule HOM05D002005 ORTHO05D003757 3.0e-15 87.4 471 25.3
FvH4_1g29420 Fragaria vesca HOM05D002005 ORTHO05D003757 3.9e-15 87.0 467 26.3
Lj1P1075T62 Lonicera japonica HOM05D002005 ORTHO05D003757 3.9e-15 87.0 467 25.7
MBI13_g15011_MAGBIO Magnolia biondii HOM05D002005 ORTHO05D003757 3.9e-15 87.0 478 26.8
FAN19G0929 Fragaria x ananassa HOM05D002005 ORTHO05D003757 5.1e-15 86.7 466 24.9
FAN26G2169 Fragaria x ananassa HOM05D002005 ORTHO05D003757 5.1e-15 86.7 467 26.1
Migut.J01577 Erythranthe guttata HOM05D002005 ORTHO05D003757 6.6e-15 86.3 473 25.2
FAN28G0247 Fragaria x ananassa HOM05D002005 ORTHO05D003757 6.6e-15 86.3 467 26.3
Sopen10g031700 Solanum pennellii HOM05D002005 ORTHO05D003757 8.7e-15 85.9 498 25.9
TWI34G0003 Tripterygium wilfordii HOM05D002005 ORTHO05D003757 1.1e-14 85.5 451 25.9
MSTRG.6275 Avicennia marina HOM05D002005 ORTHO05D003757 1.5e-14 85.1 534 25.5
Eucgr.A02165 Eucalyptus grandis HOM05D002005 ORTHO05D003757 1.5e-14 85.1 473 23.0
QL07p015943 Quercus lobata HOM05D002005 ORTHO05D003757 1.5e-14 85.1 472 24.6
arahy.Tifrunner.gnm1.ann1.QNMS29 Arachis hypogaea HOM05D002005 ORTHO05D003757 1.9e-14 84.7 456 24.1
Duzib128G1593 Durio zibethinus HOM05D002005 ORTHO05D003757 1.9e-14 84.7 473 24.3
RcHm_v2.0_Chr3g0495491 Rosa chinensis HOM05D002005 ORTHO05D003757 1.9e-14 84.7 440 24.3
HPP92_008478 Vanilla planifolia HOM05D002005 ORTHO05D003757 1.9e-14 84.7 190 36.3
arahy.Tifrunner.gnm1.ann1.M37KEN Arachis hypogaea HOM05D002005 ORTHO05D003757 2.5e-14 84.3 458 24.2
ECA236G4805 Erigeron canadensis HOM05D002005 ORTHO05D003757 5.6e-14 83.2 440 27.5
FvH4_2g10091 Fragaria vesca HOM05D002005 ORTHO05D003757 5.6e-14 83.2 448 25.2
BcaB01g05164 Brassica carinata HOM05D002005 ORTHO05D003757 7.3e-14 82.8 471 23.8
BolC3t13486H Brassica oleracea HOM05D002005 ORTHO05D003757 7.3e-14 82.8 471 23.8
C03p09980 Brassica napus HOM05D002005 ORTHO05D003757 1.3e-13 82.0 471 23.4
AL1G51410 Arabidopsis lyrata HOM05D002005 ORTHO05D003757 1.6e-13 81.6 473 23.5
Nitab4.5_0000123g0050 Nicotiana tabacum HOM05D002005 ORTHO05D003757 1.6e-13 81.6 473 25.2
Cpa.g.sc73.39 Carica papaya HOM05D002005 ORTHO05D003757 2.1e-13 81.3 464 24.6
FAN27G2381 Fragaria x ananassa HOM05D002005 ORTHO05D003757 2.1e-13 81.3 485 25.6
CANSAT78G2106 Cannabis sativa HOM05D002005 ORTHO05D003757 2.8e-13 80.9 508 23.8
CiPaw.09G053000 Carya illinoinensis HOM05D002005 ORTHO05D003757 2.8e-13 80.9 476 26.7
Solyc10g076650.3 Solanum lycopersicum HOM05D002005 ORTHO05D003757 2.8e-13 80.9 470 24.3
Gohir.D11G237400 Gossypium hirsutum HOM05D002005 ORTHO05D003757 3.6e-13 80.5 454 23.3
Gorai.007G250800 Gossypium raimondii HOM05D002005 ORTHO05D003757 3.6e-13 80.5 449 24.3
GSVIVG01029896001 Vitis vinifera HOM05D002005 ORTHO05D003757 3.6e-13 80.5 430 26.0
A03p08550 Brassica napus HOM05D002005 ORTHO05D003757 4.8e-13 80.1 484 22.7
Nitab4.5_0007999g0010 Nicotiana tabacum HOM05D002005 ORTHO05D003757 6.2e-13 79.7 463 25.9
Solyc10g081200.1 Solanum lycopersicum HOM05D002005 ORTHO05D003757 6.2e-13 79.7 501 28.9
BraA03t10181Z Brassica rapa HOM05D002005 ORTHO05D003757 8.1e-13 79.3 469 23.5
CiPaw.10G044600 Carya illinoinensis HOM05D002005 ORTHO05D003757 8.1e-13 79.3 500 28.4
Sed0005780 Sechium edule HOM05D002005 ORTHO05D003757 1.1e-12 79.0 451 29.0
Aa31LG11G11930 Aethionema arabicum HOM05D002005 ORTHO05D003757 1.4e-12 78.6 448 23.7
Hund15172 Selenicereus undatus HOM05D002005 ORTHO05D003757 1.4e-12 78.6 196 31.6
TWI32G1337 Tripterygium wilfordii HOM05D002005 ORTHO05D003757 1.4e-12 78.6 456 23.9
Gohir.A13G097000 Gossypium hirsutum HOM05D002005 ORTHO05D003757 1.8e-12 78.2 481 24.5
PGSC0003DMG400028204 Solanum tuberosum HOM05D002005 ORTHO05D003757 1.8e-12 78.2 502 27.3
CAN.G128.110 Capsicum annuum HOM05D002005 ORTHO05D003757 2.4e-12 77.8 524 28.6
CARHR195210 Cardamine hirsuta HOM05D002005 ORTHO05D003757 3.1e-12 77.4 458 25.1
Sopen10g028260 Solanum pennellii HOM05D002005 ORTHO05D003757 4.0e-12 77.0 429 24.9
Sopen10g028680 Solanum pennellii HOM05D002005 ORTHO05D003757 5.3e-12 76.6 449 24.1
MD14G1012900 Malus domestica HOM05D002005 ORTHO05D003757 6.9e-12 76.3 547 22.1
PSO210G7347 Papaver somniferum HOM05D002005 ORTHO05D003757 6.9e-12 76.3 497 27.0
Peaxi162Scf00153g01023 Petunia axillaris HOM05D002005 ORTHO05D003757 6.9e-12 76.3 482 22.8
FAN24G1358 Fragaria x ananassa HOM05D002005 ORTHO05D003757 9.0e-12 75.9 429 24.7
PGSC0003DMG400019177 Solanum tuberosum HOM05D002005 ORTHO05D003757 9.0e-12 75.9 442 24.0
Sp6g26360 Schrenkiella parvula HOM05D002005 ORTHO05D003757 1.2e-11 75.5 459 23.5
AT5G17910 Arabidopsis thaliana HOM05D002005 ORTHO05D003757 2.0e-11 74.7 452 22.8
Migut.N01846 Erythranthe guttata HOM05D002005 ORTHO05D003757 2.0e-11 74.7 426 30.8
FAN15G1233 Fragaria x ananassa HOM05D002005 ORTHO05D003757 2.0e-11 74.7 465 24.1
BcaB01g04923 Brassica carinata HOM05D002005 ORTHO05D003757 4.5e-11 73.6 466 22.5
Duzib106G2027 Durio zibethinus HOM05D002005 ORTHO05D003757 5.8e-11 73.2 460 23.7
Gohir.D13G102100 Gossypium hirsutum HOM05D002005 ORTHO05D003757 7.6e-11 72.8 471 22.3
Nn2g11384 Nelumbo nucifera HOM05D002005 ORTHO05D003757 7.6e-11 72.8 435 23.7
PSO532G0028 Papaver somniferum HOM05D002005 ORTHO05D003757 9.9e-11 72.4 268 29.5
Nitab4.5_0000062g0420 Nicotiana tabacum HOM05D002005 ORTHO05D003757 1.3e-10 72.0 182 35.2
CDE09G1138 Ceratophyllum demersum HOM05D002005 ORTHO05D003757 1.7e-10 71.6 180 32.8
RcHm_v2.0_Chr6g0267051 Rosa chinensis HOM05D002005 ORTHO05D003757 1.7e-10 71.6 480 24.6
SGA_v2.0_scaffold240G44144 Striga asiatica HOM05D002005 ORTHO05D003757 1.7e-10 71.6 476 24.4
Gorai.013G114300 Gossypium raimondii HOM05D002005 ORTHO05D003757 2.9e-10 70.9 470 22.1
Os07g0472300 Oryza sativa ssp. japonica HOM05D002005 ORTHO05D003757 2.9e-10 70.9 176 32.4
Oeu060743.1 Olea europaea HOM05D002005 ORTHO05D003757 4.9e-10 70.1 456 23.9
ClCG04G004830 Citrullus lanatus HOM05D002005 ORTHO05D003757 6.4e-10 69.7 480 28.5
Gohir.A13G160000 Gossypium hirsutum HOM05D002005 ORTHO05D003757 8.4e-10 69.3 491 23.6
ATR0307G088 Amborella trichopoda HOM05D002005 ORTHO05D003757 1.4e-09 68.6 475 24.6
CDE08G0232 Ceratophyllum demersum HOM05D002005 ORTHO05D003757 1.4e-09 68.6 447 24.2
Aqoxy4G02664 Aquilegia oxysepala HOM05D002005 ORTHO05D003757 1.9e-09 68.2 426 24.4
AUR62037108 Chenopodium quinoa HOM05D002005 ORTHO05D003757 1.9e-09 68.2 175 34.9
PSO541G2770 Papaver somniferum HOM05D002005 ORTHO05D003757 4.2e-09 67.0 209 30.6
DCAR_020635 Daucus carota HOM05D002005 ORTHO05D003757 9.3e-09 65.9 454 22.7
PSO210G3936 Papaver somniferum HOM05D002005 ORTHO05D003757 9.3e-09 65.9 497 26.6
Gohir.D13G165200 Gossypium hirsutum HOM05D002005 ORTHO05D003757 3.5e-08 63.9 480 21.2
EL10Ac9g21403 Beta vulgaris HOM05D002005 ORTHO05D003757 7.9e-08 62.8 104 35.6
CsaV3_4G031680 Cucumis sativus L. HOM05D002005 ORTHO05D003757 7.9e-08 62.8 472 22.7
Ciclev10030490m.g Citrus clementina HOM05D002005 ORTHO05D003757 1.0e-07 62.4 194 27.8
AUR62018799 Chenopodium quinoa HOM05D002005 ORTHO05D003757 2.3e-07 61.2 394 24.6
MELO3C008875.2 Cucumis melo HOM05D002005 ORTHO05D003757 2.3e-07 61.2 477 23.5
Gorai.013G197500 Gossypium raimondii HOM05D002005 ORTHO05D003757 2.3e-07 61.2 491 22.8
Ah.13g070760 Amaranthus hybridus HOM05D002005 ORTHO05D003757 3.0e-07 60.8 546 22.3
HanXRQChr00c0297g0573161 Helianthus annuus HOM05D002005 ORTHO05D003757 3.0e-07 60.8 387 23.3
Solyc10g076995.1 Solanum lycopersicum HOM05D002005 ORTHO05D003757 3.9e-07 60.5 309 23.3
AUR62042367 Chenopodium quinoa HOM05D002005 ORTHO05D003757 5.1e-07 60.1 152 36.2
Duzib128G1239 Durio zibethinus HOM05D002005 ORTHO05D003757 6.7e-07 59.7 417 22.5
Prupe.6G060900 Prunus persica HOM05D002005 ORTHO05D006330 1.1e-06 58.9 200 27.5
Os05g0490400 Oryza sativa ssp. japonica HOM05D002005 ORTHO05D003757 1.5e-06 58.5 443 23.5
PSO339G0059 Papaver somniferum HOM05D002005 ORTHO05D003757 1.5e-06 58.5 256 27.0
PGR042G3731 Punica granatum HOM05D002005 ORTHO05D003757 2.5e-06 57.8 486 23.5
TWI79G1268 Tripterygium wilfordii HOM05D002005 ORTHO05D006330 2.5e-06 57.8 132 31.1
Lsat_1_v5_gn_8_85341 Lactuca sativa HOM05D002005 ORTHO05D003757 3.3e-06 57.4 447 23.9
Dinv28617 Davidia involucrata HOM05D002005 ORTHO05D003757 7.4e-06 56.2 108 33.3
Nitab4.5_0003808g0050 Nicotiana tabacum HOM05D002005 ORTHO05D003757 7.4e-06 56.2 499 26.1
AUR62007203 Chenopodium quinoa HOM05D002005 ORTHO05D003757 9.6e-06 55.8 410 24.9


User provided reference genes

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