Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0116400 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 3.0e-128 461.8 230 100.0
Os12g0115900 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 2.1e-126 455.7 230 98.7
TAR267G0001 Trochodendron aralioides HOM05D005727 ORTHO05D007324 2.7e-89 332.4 233 70.4
TAR636G3506 Trochodendron aralioides HOM05D005727 ORTHO05D007324 1.0e-88 330.5 233 70.0
Gohir.A09G213660 Gossypium hirsutum HOM05D005727 ORTHO05D007324 1.8e-88 329.7 192 79.7
Gohir.D09G215000 Gossypium hirsutum HOM05D005727 ORTHO05D007324 1.8e-88 329.7 192 79.7
Gorai.006G235400 Gossypium raimondii HOM05D005727 ORTHO05D007324 1.8e-88 329.7 192 79.7
Thecc.04G151700 Theobroma cacao HOM05D005727 ORTHO05D007324 3.0e-88 328.9 202 75.2
GSVIVG01030181001 Vitis vinifera HOM05D005727 ORTHO05D007324 3.0e-88 328.9 205 75.1
Potri.016G136600 Populus trichocarpa HOM05D005727 ORTHO05D007324 6.7e-88 327.8 189 80.4
QL07p032118 Quercus lobata HOM05D005727 ORTHO05D007324 1.1e-87 327.0 221 73.3
Atru.chr8.117 Acer truncatum HOM05D005727 ORTHO05D007324 3.3e-87 325.5 196 75.5
Ah.15g090030 Amaranthus hybridus HOM05D005727 ORTHO05D007324 4.4e-87 325.1 196 76.0
Cpa.g.sc86.59 Carica papaya HOM05D005727 ORTHO05D007324 4.4e-87 325.1 221 71.9
arahy.Tifrunner.gnm1.ann1.FBM6UZ Arachis hypogaea HOM05D005727 ORTHO05D007324 5.7e-87 324.7 242 66.9
Phvul.008G082900 Phaseolus vulgaris HOM05D005727 ORTHO05D007324 9.7e-87 323.9 240 69.2
Sabra04G0153300 Salix brachista HOM05D005727 ORTHO05D007324 1.7e-86 323.2 189 78.3
VMungo1383G0728 Vigna mungo HOM05D005727 ORTHO05D007324 1.7e-86 323.2 226 71.2
Sc02g0000150 Simmondsia chinensis HOM05D005727 ORTHO05D007324 2.2e-86 322.8 235 67.7
Nn2g10300 Nelumbo nucifera HOM05D005727 ORTHO05D007324 3.7e-86 322.0 233 69.1
AUR62006416 Chenopodium quinoa HOM05D005727 ORTHO05D007324 4.8e-86 321.6 196 76.0
Glyma.18G213900 Glycine max HOM05D005727 ORTHO05D007324 1.1e-85 320.5 225 70.2
Ciclev10012658m.g Citrus clementina HOM05D005727 ORTHO05D007324 4.1e-85 318.5 213 71.4
CiPaw.09G221300 Carya illinoinensis HOM05D005727 ORTHO05D007324 5.3e-85 318.2 231 68.8
SalBow8G0913 Salvia bowleyana HOM05D005727 ORTHO05D007324 5.3e-85 318.2 212 73.6
TWI53G1599 Tripterygium wilfordii HOM05D005727 ORTHO05D007324 5.3e-85 318.2 235 68.5
Manes.08G171300 Manihot esculenta HOM05D005727 ORTHO05D007324 7.0e-85 317.8 229 69.0
Hund19761 Selenicereus undatus HOM05D005727 ORTHO05D007324 7.0e-85 317.8 224 68.8
Glyma.09G275000 Glycine max HOM05D005727 ORTHO05D007324 9.1e-85 317.4 226 69.0
Cc06_g00400 Coffea canephora HOM05D005727 ORTHO05D007324 1.6e-84 316.6 223 68.6
Aqoxy4G02424 Aquilegia oxysepala HOM05D005727 ORTHO05D007324 2.6e-84 315.8 227 69.6
PGR031G0696 Punica granatum HOM05D005727 ORTHO05D007324 3.5e-84 315.5 228 68.9
Sed0002775 Sechium edule HOM05D005727 ORTHO05D007324 3.5e-84 315.5 203 73.4
EL10Ac7g17100 Beta vulgaris HOM05D005727 ORTHO05D007324 4.5e-84 315.1 195 73.8
Lj1g0000237 Lotus japonicus HOM05D005727 ORTHO05D007324 1.3e-83 313.5 231 66.7
Psat3g118920 Pisum sativum HOM05D005727 ORTHO05D007324 1.3e-83 313.5 235 65.5
BolC3t14633H Brassica oleracea HOM05D005727 ORTHO05D007324 2.2e-83 312.8 204 70.6
Cfa017035 Carpinus fangiana HOM05D005727 ORTHO05D007324 3.8e-83 312.0 222 68.0
MELO3C009104.2 Cucumis melo HOM05D005727 ORTHO05D007324 3.8e-83 312.0 194 73.7
FAN05G4930 Fragaria x ananassa HOM05D005727 ORTHO05D007324 3.8e-83 312.0 198 76.3
FAN09G3145 Fragaria x ananassa HOM05D005727 ORTHO05D007324 3.8e-83 312.0 198 76.3
arahy.Tifrunner.gnm1.ann1.CT9SCB Arachis hypogaea HOM05D005727 ORTHO05D007324 5.0e-83 311.6 250 63.6
RcHm_v2.0_Chr3g0460491 Rosa chinensis HOM05D005727 ORTHO05D007324 5.0e-83 311.6 196 75.5
CsaV3_3G033100 Cucumis sativus L. HOM05D005727 ORTHO05D007324 6.5e-83 311.2 194 73.2
HPP92_018087 Vanilla planifolia HOM05D005727 ORTHO05D007324 8.5e-83 310.8 236 67.4
FvH4_6g09890 Fragaria vesca HOM05D005727 ORTHO05D007324 1.1e-82 310.5 198 75.8
FAN14G2915 Fragaria x ananassa HOM05D005727 ORTHO05D007324 1.1e-82 310.5 198 75.8
Lalb_Chr01g0023751 Lupinus albus HOM05D005727 ORTHO05D007324 1.1e-82 310.5 221 69.7
MD12G1188200 Malus domestica HOM05D005727 ORTHO05D007324 1.5e-82 310.1 196 76.0
BcaNung03307 Brassica carinata HOM05D005727 ORTHO05D007324 1.9e-82 309.7 193 73.1
AUR62029764 Chenopodium quinoa HOM05D005727 ORTHO05D007324 1.9e-82 309.7 208 70.2
Haze_21174 Corylus avellana HOM05D005727 ORTHO05D007324 1.9e-82 309.7 194 73.2
ECA248G0208 Erigeron canadensis HOM05D005727 ORTHO05D007324 4.2e-82 308.5 220 68.2
A10p33800 Brassica napus HOM05D005727 ORTHO05D007324 5.5e-82 308.1 188 73.9
Thhalv10014581m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 9.4e-82 307.4 232 63.8
C09p74740 Brassica napus HOM05D005727 ORTHO05D007324 1.2e-81 307.0 188 73.9
ATR1127G235 Amborella trichopoda HOM05D005727 ORTHO05D007324 1.6e-81 306.6 188 73.9
CSS0006704 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 2.7e-81 305.8 189 74.6
DCAR_023975 Daucus carota HOM05D005727 ORTHO05D007324 2.7e-81 305.8 223 67.3
Dinv16978 Davidia involucrata HOM05D005727 ORTHO05D007324 2.7e-81 305.8 236 64.4
FAN05G2146 Fragaria x ananassa HOM05D005727 ORTHO05D007324 2.7e-81 305.8 193 76.2
BcaNung03303 Brassica carinata HOM05D005727 ORTHO05D007324 3.6e-81 305.4 188 73.4
BraA10t45408Z Brassica rapa HOM05D005727 ORTHO05D007324 3.6e-81 305.4 188 72.9
CARHR083040 Cardamine hirsuta HOM05D005727 ORTHO05D007324 3.6e-81 305.4 197 70.6
Oeu057982.1 Olea europaea HOM05D005727 ORTHO05D007324 4.7e-81 305.1 218 67.0
BcaC06g31951 Brassica carinata HOM05D005727 ORTHO05D007324 6.1e-81 304.7 188 72.9
THA.LOC104823320 Tarenaya hassleriana HOM05D005727 ORTHO05D007324 8.0e-81 304.3 233 63.9
CSS0016709 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 1.0e-80 303.9 239 62.8
Carub.0003s0787 Capsella rubella HOM05D005727 ORTHO05D007324 1.8e-80 303.1 197 70.6
SalBow1G7101 Salvia bowleyana HOM05D005727 ORTHO05D007324 2.3e-80 302.8 240 64.6
Actinidia20792 Actinidia chinensis HOM05D005727 ORTHO05D007324 4.0e-80 302.0 194 70.6
Lsat_1_v5_gn_5_152381 Lactuca sativa HOM05D005727 ORTHO05D007324 5.2e-80 301.6 235 64.3
SalBow1G5580 Salvia bowleyana HOM05D005727 ORTHO05D007324 5.2e-80 301.6 199 72.9
FAN05G2443 Fragaria x ananassa HOM05D005727 ORTHO05D007324 8.8e-80 300.8 216 69.9
PGSC0003DMG400031234 Solanum tuberosum HOM05D005727 ORTHO05D007324 1.2e-79 300.4 189 73.0
Eucgr.A00739 Eucalyptus grandis HOM05D005727 ORTHO05D007324 1.5e-79 300.1 213 68.5
PSO017G0584 Papaver somniferum HOM05D005727 ORTHO05D007324 2.0e-79 299.7 228 64.5
AT3G08740 Arabidopsis thaliana HOM05D005727 ORTHO05D007324 2.6e-79 299.3 214 65.0
CAN.G487.5 Capsicum annuum HOM05D005727 ORTHO05D007324 2.6e-79 299.3 226 65.5
HanXRQChr11g0345321 Helianthus annuus HOM05D005727 ORTHO05D007324 2.6e-79 299.3 234 64.1
Solyc10g075020.3 Solanum lycopersicum HOM05D005727 ORTHO05D007324 2.6e-79 299.3 189 72.5
Sopen10g027500 Solanum pennellii HOM05D005727 ORTHO05D007324 2.6e-79 299.3 189 72.5
PSO170G4055 Papaver somniferum HOM05D005727 ORTHO05D007324 3.3e-79 298.9 193 69.9
AL3G19740 Arabidopsis lyrata HOM05D005727 ORTHO05D007324 4.4e-79 298.5 214 65.0
BolC5t34584H Brassica oleracea HOM05D005727 ORTHO05D007324 4.4e-79 298.5 186 72.6
BcaC05g29610 Brassica carinata HOM05D005727 ORTHO05D007324 1.3e-78 297.0 186 72.0
A05p40060 Brassica napus HOM05D005727 ORTHO05D007324 1.3e-78 297.0 186 72.0
C05p59120 Brassica napus HOM05D005727 ORTHO05D007324 1.3e-78 297.0 186 72.0
HanXRQChr01g0000121 Helianthus annuus HOM05D005727 ORTHO05D007324 1.7e-78 296.6 198 67.7
Medtr7g073250 Medicago truncatula HOM05D005727 ORTHO05D007324 1.7e-78 296.6 218 67.0
SGA_v2.0_scaffold85G26613 Striga asiatica HOM05D005727 ORTHO05D007324 1.7e-78 296.6 205 70.2
Sp3g07170 Schrenkiella parvula HOM05D005727 ORTHO05D007324 2.8e-78 295.8 197 68.5
Thhalv10023841m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 1.8e-77 293.1 205 66.3
Sp6g41120 Schrenkiella parvula HOM05D005727 ORTHO05D007324 1.8e-77 293.1 231 63.2
Migut.J00039 Erythranthe guttata HOM05D005727 ORTHO05D007324 2.4e-77 292.7 219 65.3
TPR.G14131 Trifolium pratense HOM05D005727 ORTHO05D007324 2.4e-77 292.7 220 66.4
Thhalv10022392m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 1.2e-76 290.4 197 67.5
Nitab4.5_0010794g0010 Nicotiana tabacum HOM05D005727 ORTHO05D007324 2.0e-76 289.7 234 64.5
Peaxi162Scf01238g00221 Petunia axillaris HOM05D005727 ORTHO05D007324 2.0e-76 289.7 216 65.3
CANSAT35G1579 Cannabis sativa HOM05D005727 ORTHO05D007324 7.7e-76 287.7 231 63.2
MSTRG.5500 Avicennia marina HOM05D005727 ORTHO05D007324 1.3e-75 287.0 217 65.0
Aa31LG5G18760 Aethionema arabicum HOM05D005727 ORTHO05D007324 5.0e-75 285.0 191 69.6
AagrBONN_evm.TU.Sc2ySwM_228.1047 Anthoceros agrestis HOM05D005727 ORTHO05D007324 1.1e-74 283.9 188 70.7
Actinidia32567 Actinidia chinensis HOM05D005727 ORTHO05D007324 2.7e-73 279.3 176 72.2
BcaC01g05776 Brassica carinata HOM05D005727 ORTHO05D007324 2.6e-71 272.7 186 69.9
SalBow5G2514 Salvia bowleyana HOM05D005727 ORTHO05D007324 1.3e-70 270.4 163 78.5
Prupe.6G293500 Prunus persica HOM05D005727 ORTHO05D007324 3.7e-70 268.9 196 66.3
Pp3c23_18430 Physcomitrium patens HOM05D005727 ORTHO05D007324 1.8e-69 266.5 221 58.8
Lj3A941T101 Lonicera japonica HOM05D005727 ORTHO05D007324 4.1e-69 265.4 229 58.1
CBR_g46434 Chara braunii HOM05D005727 ORTHO05D007324 9.1e-69 264.2 188 62.8
Duzib268G0979 Durio zibethinus HOM05D005727 ORTHO05D007324 4.5e-68 261.9 198 66.7
COL.COLO4_06480 Corchorus olitorius HOM05D005727 ORTHO05D007324 1.3e-67 260.4 173 71.1
vmacro08938 Vaccinium macrocarpon HOM05D005727 ORTHO05D007324 7.2e-66 254.6 289 49.8
SMO358G0605 Selaginella moellendorffii HOM05D005727 ORTHO05D007324 1.6e-65 253.4 184 60.3
SGA_v2.0_scaffold85G26621 Striga asiatica HOM05D005727 ORTHO05D007324 1.6e-65 253.4 165 72.1
Aa31LG5G11490 Aethionema arabicum HOM05D005727 ORTHO05D007324 2.8e-65 252.7 157 72.0
Mapoly0080s0087 Marchantia polymorpha HOM05D005727 ORTHO05D007324 1.8e-64 250.0 188 61.2
unitig_578.g15912 Utricularia gibba HOM05D005727 ORTHO05D007324 1.7e-62 243.4 153 71.9
Rhsim04G0121700 Rhododendron simsii HOM05D005727 ORTHO05D007324 1.2e-57 227.3 321 41.1
MCO07G614 Micromonas commoda HOM05D005727 ORTHO05D007324 1.4e-56 223.8 183 56.3
Cre16.g691000 Chlamydomonas reinhardtii HOM05D005727 ORTHO05D007324 6.6e-51 204.9 203 50.2
MD04G1174600 Malus domestica HOM05D005727 ORTHO05D007324 6.6e-51 204.9 133 71.4
SEGI_30349 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 3.9e-43 179.1 127 63.0
ClCG10G022720 Citrullus lanatus HOM05D005727 ORTHO05D007324 8.3e-38 161.4 104 70.2
CDE04G3002 Ceratophyllum demersum HOM05D005727 ORTHO05D007324 1.4e-37 160.6 132 65.2
Sopen10g027490 Solanum pennellii HOM05D005727 ORTHO05D007324 5.4e-37 158.7 104 67.3
Zm00001eb406060 Zea mays HOM05D005727 ORTHO05D007324 3.5e-28 129.4 73 83.6
PRCOL_00007056 Prasinoderma coloniale HOM05D005727 ORTHO05D007324 6.9e-24 115.2 165 38.8
Nn7g35872 Nelumbo nucifera HOM05D007418 ORTHO05D009419 3.2e-21 106.3 181 27.6
Pp3c1_29390 Physcomitrium patens HOM05D007418 ORTHO05D009419 5.1e-19 99.0 183 26.2
Zm00001eb061520 Zea mays HOM05D007418 ORTHO05D009419 1.1e-18 97.8 216 26.4
AUR62019167 Chenopodium quinoa HOM05D007418 ORTHO05D009419 1.5e-18 97.4 184 27.7
Aqoxy1G00469 Aquilegia oxysepala HOM05D002514 ORTHO05D002761 4.3e-18 95.9 180 26.7
AUR62040906 Chenopodium quinoa HOM05D007418 ORTHO05D009419 6.2e-17 92.0 176 27.8
AagrBONN_evm.TU.Sc2ySwM_344.2531 Anthoceros agrestis HOM05D007418 ORTHO05D009419 3.1e-16 89.7 164 28.7
PSO384G4713 Papaver somniferum HOM05D007418 ORTHO05D009419 4.0e-16 89.4 202 23.8
PSO339G6348 Papaver somniferum HOM05D007418 ORTHO05D009419 1.2e-15 87.8 196 23.5
MCO01G577 Micromonas commoda HOM05D005727 ORTHO05D009419 1.5e-15 87.4 186 25.8
SMO172G0180 Selaginella moellendorffii HOM05D007418 ORTHO05D009419 1.5e-15 87.4 184 23.4
AL7G26640 Arabidopsis lyrata HOM05D007418 ORTHO05D009419 4.5e-15 85.9 178 25.3
CDE04G0740 Ceratophyllum demersum HOM05D005727 ORTHO05D007324 7.6e-15 85.1 63 60.3
Mapoly0009s0101 Marchantia polymorpha HOM05D007418 ORTHO05D009419 7.6e-15 85.1 191 23.6
Eucgr.J01769 Eucalyptus grandis HOM05D007418 ORTHO05D009419 9.9e-15 84.7 181 27.1
Dinv13469 Davidia involucrata HOM05D007418 ORTHO05D009419 1.3e-14 84.3 189 24.9
CBR_g28818 Chara braunii HOM05D007418 ORTHO05D009419 3.8e-14 82.8 192 25.5
PGR119G2313 Punica granatum HOM05D007418 ORTHO05D009419 3.8e-14 82.8 184 25.5
CARHR233880 Cardamine hirsuta HOM05D007418 ORTHO05D009419 4.9e-14 82.4 178 24.2
Gorai.009G114600 Gossypium raimondii HOM05D007418 ORTHO05D009419 6.4e-14 82.0 181 28.2
AT4G26310 Arabidopsis thaliana HOM05D007418 ORTHO05D009419 8.4e-14 81.6 225 24.9
Gohir.A05G110100 Gossypium hirsutum HOM05D007418 ORTHO05D009419 8.4e-14 81.6 181 28.2
Carub.0007s1463 Capsella rubella HOM05D007418 ORTHO05D009419 1.4e-13 80.9 224 23.7
Ciclev10016443m.g Citrus clementina HOM05D007418 ORTHO05D009419 1.9e-13 80.5 195 23.6
COL.COLO4_22858 Corchorus olitorius HOM05D007418 ORTHO05D009419 1.9e-13 80.5 178 25.8
Thhalv10021419m.g Eutrema salsugineum HOM05D007418 ORTHO05D009419 3.2e-13 79.7 178 24.7
Sp3g14020 Schrenkiella parvula HOM05D007418 ORTHO05D009419 3.2e-13 79.7 193 24.4
BolC5t33821H Brassica oleracea HOM05D007418 ORTHO05D009419 5.4e-13 79.0 193 24.4
BraA05t22194Z Brassica rapa HOM05D007418 ORTHO05D009419 5.4e-13 79.0 193 24.4
Duzib160G0534 Durio zibethinus HOM05D007418 ORTHO05D009419 7.1e-13 78.6 181 26.5
Potri.001G004300 Populus trichocarpa HOM05D007418 ORTHO05D009419 9.3e-13 78.2 180 25.6
THA.LOC104817736 Tarenaya hassleriana HOM05D007418 ORTHO05D009419 1.2e-12 77.8 178 23.0
BcaC05g28944 Brassica carinata HOM05D007418 ORTHO05D006651 2.1e-12 77.0 191 24.1
C05p50730 Brassica napus HOM05D007418 ORTHO05D006651 2.1e-12 77.0 191 24.1
Thecc.06G017000 Theobroma cacao HOM05D007418 ORTHO05D009419 2.1e-12 77.0 181 26.5
HPP92_000821 Vanilla planifolia HOM05D007418 ORTHO05D009419 4.6e-12 75.9 165 26.7
Actinidia16244 Actinidia chinensis HOM05D007418 ORTHO05D009419 1.3e-11 74.3 182 23.1
Cc01_g00020 Coffea canephora HOM05D007418 ORTHO05D009419 1.3e-11 74.3 166 24.1
Cc01_g03260 Coffea canephora HOM05D007418 ORTHO05D009419 3.9e-11 72.8 166 23.5
SEGI_29867 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 5.1e-11 72.4 37 83.8
A05p33720 Brassica napus HOM05D007418 ORTHO05D006651 1.5e-10 70.9 192 24.5
QL01p009000 Quercus lobata HOM05D007418 ORTHO05D009419 3.3e-10 69.7 213 25.4
Sabra01G0003000 Salix brachista HOM05D007418 ORTHO05D009419 9.6e-10 68.2 194 22.7
MBI04_g37007_MAGBIO Magnolia biondii HOM05D007418 ORTHO05D009419 2.1e-09 67.0 146 26.0
Hma1.2p1_0062F.1_g034220 Hydrangea macrophylla HOM05D007418 ORTHO05D009419 6.9e-08 62.0 135 26.7
Ciclev10010465m.g Citrus clementina HOM05D005727 ORTHO05D007324 5.8e-07 58.9 40 67.5


User provided reference genes

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