Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 0.0e+00 1389.0 758 100.0
Zm00001eb391750 Zea mays HOM05D005554 ORTHO05D007823 0.0e+00 1168.7 770 82.3
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 6.8e-238 827.8 722 61.1
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 3.4e-237 825.5 726 61.0
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 1.7e-236 823.2 734 59.4
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 1.9e-235 819.7 723 60.2
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 1.9e-235 819.7 728 60.0
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 9.2e-235 817.4 720 60.0
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 3.5e-234 815.5 719 61.1
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 1.0e-233 813.9 713 60.6
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 2.3e-233 812.8 715 60.7
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 3.0e-233 812.4 721 60.9
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 3.0e-233 812.4 721 60.1
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 1.1e-232 810.4 724 59.9
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 1.5e-232 810.1 720 59.2
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 1.5e-232 810.1 724 60.1
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 7.3e-232 807.7 711 59.8
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 7.3e-232 807.7 716 60.2
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 7.3e-232 807.7 719 59.1
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 9.6e-232 807.4 723 59.9
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 1.2e-231 807.0 713 60.0
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 1.2e-231 807.0 714 60.5
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 2.8e-231 805.8 727 59.4
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 4.7e-231 805.1 718 58.8
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 2.4e-230 802.7 724 59.4
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 5.2e-230 801.6 714 59.5
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 5.2e-230 801.6 722 58.3
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 5.2e-230 801.6 724 59.4
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 6.8e-230 801.2 712 59.4
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 2.0e-229 799.7 718 58.4
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 2.6e-229 799.3 711 60.3
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 4.4e-229 798.5 718 58.9
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 4.4e-229 798.5 714 59.4
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 7.6e-229 797.7 713 58.8
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 7.6e-229 797.7 724 59.4
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 9.9e-229 797.3 714 59.5
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 1.3e-228 797.0 728 59.2
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 4.9e-228 795.0 732 58.6
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 8.4e-228 794.3 714 59.2
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 1.1e-227 793.9 721 59.8
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 1.9e-227 793.1 720 58.9
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 1.9e-227 793.1 723 59.1
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 1.9e-227 793.1 723 59.1
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 3.2e-227 792.3 714 59.9
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 3.2e-227 792.3 720 59.0
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 4.2e-227 792.0 712 59.6
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 7.1e-227 791.2 706 60.5
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 7.1e-227 791.2 707 59.5
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 9.3e-227 790.8 734 57.6
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 1.6e-226 790.0 729 57.9
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 4.6e-226 788.5 712 59.4
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 1.3e-225 786.9 655 63.4
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 2.3e-225 786.2 720 58.6
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 3.0e-225 785.8 716 58.0
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 5.1e-225 785.0 716 58.4
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 5.1e-225 785.0 722 58.3
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 1.1e-224 783.9 721 58.4
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 1.1e-224 783.9 721 58.4
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 1.9e-224 783.1 708 59.5
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 2.5e-224 782.7 713 59.3
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 3.3e-224 782.3 733 58.4
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 5.6e-224 781.6 713 58.8
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 2.8e-223 779.2 716 59.1
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 4.8e-223 778.5 710 58.6
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 1.4e-222 776.9 718 57.5
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 2.4e-222 776.2 714 59.2
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 5.3e-222 775.0 714 58.3
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 6.9e-222 774.6 714 58.3
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 6.9e-222 774.6 771 55.4
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 1.5e-221 773.5 715 58.2
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 1.5e-221 773.5 725 56.7
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 4.4e-221 771.9 715 58.2
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 4.4e-221 771.9 719 58.4
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 7.6e-221 771.2 720 57.4
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 7.6e-221 771.2 746 56.3
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 1.3e-220 770.4 720 57.2
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 1.3e-220 770.4 717 58.3
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 2.9e-220 769.2 719 58.0
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 3.8e-220 768.8 714 56.6
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 8.4e-220 767.7 715 58.9
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 1.1e-219 767.3 713 57.6
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 3.2e-219 765.8 713 57.6
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 4.2e-219 765.4 700 59.7
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 2.7e-218 762.7 720 57.1
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 7.9e-218 761.1 722 57.2
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 1.3e-217 760.4 706 57.9
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 5.1e-217 758.4 721 57.0
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 3.3e-216 755.7 719 57.0
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 3.8e-212 742.3 780 53.3
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 1.1e-211 740.7 554 66.6
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 1.4e-211 740.3 717 55.0
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 3.9e-209 732.3 725 54.2
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 3.9e-209 732.3 717 55.0
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 3.1e-206 722.6 668 58.8
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 3.5e-202 709.1 659 58.1
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 4.6e-202 708.8 678 56.5
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 1.1e-200 704.1 667 58.3
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 5.3e-190 668.7 699 53.6
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 6.1e-186 655.2 726 49.0
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 3.0e-177 626.3 527 58.8
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 5.1e-177 625.5 531 58.4
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 6.7e-177 625.2 728 48.9
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 6.3e-175 618.6 549 55.9
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 4.1e-174 615.9 716 47.8
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 7.5e-168 595.1 575 54.1
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 7.7e-165 585.1 533 55.0
GSVIVG01019746001 Vitis vinifera HOM05D005554 ORTHO05D007823 1.0e-153 548.1 405 67.2
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 1.8e-150 537.3 514 52.9
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 8.6e-148 528.5 557 54.0
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 1.6e-146 524.2 416 61.1
HPP92_020853 Vanilla planifolia HOM05D005554 ORTHO05D007823 6.6e-132 475.7 416 55.5
HPP92_008494 Vanilla planifolia HOM05D005554 ORTHO05D007823 3.2e-126 456.8 267 80.5
Lj2C0T8 Lonicera japonica HOM05D005554 ORTHO05D007823 1.2e-122 444.9 344 65.7
MCO12G378 Micromonas commoda HOM05D005554 ORTHO05D007823 1.1e-81 308.9 500 39.0
Oeu007749.1 Olea europaea HOM05D005554 ORTHO05D007823 5.7e-75 286.6 622 35.4
PRCOL_00002248 Prasinoderma coloniale HOM05D005554 ORTHO05D007823 1.8e-68 265.0 671 30.7
Cre12.g519900 Chlamydomonas reinhardtii HOM05D005554 ORTHO05D007823 2.0e-67 261.5 716 33.2
CAN.G20.10 Capsicum annuum HOM05D005554 ORTHO05D007823 5.9e-64 250.0 270 50.7
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.1e-62 245.7 262 49.6
Actinidia02000 Actinidia chinensis HOM05D005554 ORTHO05D007823 2.2e-55 221.5 167 66.5
SEGI_34096 Sequoiadendron giganteum HOM05D005554 ORTHO05D007823 3.8e-39 167.5 99 75.8
Lj2C0T9 Lonicera japonica HOM05D005554 ORTHO05D007823 1.4e-36 159.1 281 39.1
CSS0006848 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 1.5e-35 155.6 83 83.1
MD14G1106300 Malus domestica HOM05D005554 ORTHO05D007823 1.2e-19 102.8 54 81.5
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 8.3e-18 96.7 95 54.7
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 8.3e-18 96.7 126 46.0
Sabra03G0091300 Salix brachista HOM05D008679 ORTHO05D010804 1.9e-17 95.5 105 50.5
MD14G1106200 Malus domestica HOM05D005554 ORTHO05D007823 4.9e-10 70.9 41 80.5
MD14G1106100 Malus domestica HOM05D005554 ORTHO05D026402 1.5e-06 59.3 131 30.5


User provided reference genes

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